Crab bioturbation alters nitrogen cycling and promotes nitrous oxide emission in intertidal wetlands: Influence and microbial mechanism

Stocking filter-feeder in fed fish aquaculture pond: Unexpected Aggravation of nitrous oxide emission

Intensive farming of fed fish could produce large amounts of uneaten feed and feces, potentially leading to increased nitrous oxide (N2O) emissions. Filter-feeding fish can ingest residual feed and feces, but it is unclear whether introducing them into fed fish farming ponds could reduce N2O emissions. This study employed monoculture of fed largemouth bass (Micropterus salmoides, LB) and polyculture of LB with filter-feeding silver carp (Hypophthalmichthys molitrix, SC) at density ratios of 18:1, 9:1 and 4.5:1 to compare the N2O emission characteristics. The results showed that silver carp could indeed feed on largemouth bass feces, and isotope mixing model indicated that feces was the second largest contributor to the food of silver carp, reaching 14.75 %-15.56 %. However, polyculture of the two species did not or even increased N2O emission flux at water-air interface and its release potential in sediment. Increased mineralization, nitrification and denitrification rates were observed in polyculture systems, particularly at high stocking densities of silver carp. Also, the higher NH4+ accumulation were found across sediment-water interface within polyculture systems. Metagenome revealed that polyculture disturbed the microbial community structure and increased the abundance of Burkholderiales and Steroidobacteraceae. Moreover, polyculture increased the abundance of nitrogen-cycling functional genes, including gdhA, hao, nirB and norB, potentially contributing to the elevated N2O emissions. Structural equation model highlighted that polyculture of largemouth bass and silver carp could drive N2O emissions, mainly through increased sedimental NH4+ concentration and microbial activity. These findings indicate that the introduction of extractive filter-feeding fish into fed fish farming ponds could not reduce N2O emissions, implying the need for optimized management strategies to balance aquaculture productivity with environmental sustainability.

Microplastics affect organic nitrogen in sediment: The response of organic nitrogen mineralization to microbes and benthic animals

Organic nitrogen is a crucial component of the nitrogen element, and its mineralization by sediment organisms may trigger river eutrophication. Microplastics (MPs), as emerging contaminants, influence nitrogen cycling in sediments. However, the response of organic nitrogen mineralization to sediment organisms (microbes and benthic animals) under MPs pollution remains unclear. This study used microcosm experiments and structural equation modeling to explore the effects of benthic animals and sediment microbes on organic nitrogen mineralization in the presence of polystyrene, polypropylene, and polylactic acid. Compared to the sediment without MPs, the addition of MPs caused a 17 % decrease in ammonium concentration. However, benthic animals enhanced the organic nitrogen mineralization, resulting in a 63 % increase in ammonium concentration. MPs pollution also significantly increase the nodes and edges in the microbial network and decrease the abundance of the organic nitrogen mineralization gene (UreC). In contrast, benthic animals reduce the microbial network complexity, shape keystone microbes (Lysobacter, Flavobacterium, Terrimonas, and Pontibacter), and enhanced UreC abundance. Structural equation modeling was conducted to confirm that benthic animals regulate keystone microbes, thereby promoting organic nitrogen mineralization. These findings indicate that the bioturbation by benthic animals may give arise to a sustained increase in ammonium concentrations in rivers polluted by MPs, therefore, exacerbate river eutrophication.

Salt marsh macrofauna: An overview of functions and services

Salt marshes are globally important blue carbon ecosystems, providing essential services such as coastal protection, carbon sequestration, nutrient cycling, and biodiversity support. Among their key inhabitants, macrofauna play critical roles in sustaining ecosystem health and resilience through processes like bioturbation, nutrient cycling, organic matter turnover, and trophic interactions, which in turn support ecosystem services such as fisheries and coastal community livelihoods. Despite their contributions, no comprehensive review has yet focused exclusively on the diverse roles and services of salt marsh macrofauna. This review aims to address this gap by synthesizing current research, supported by a bibliometric analysis revealing significant growth in studies since the year 2000, especially those addressing ecosystem services and climate resilience. We provide an in-depth assessment of macrofaunal functions in bioturbation, nutrient cycling, organic matter dynamics, greenhouse gas regulation, primary and secondary production, and food web interactions. Additionally, we examine the ecosystem services provided, such as provisioning, regulating, and cultural services, and explore the impact of environmental stressors on macrofaunal communities. Finally, this review identifies significant knowledge gaps, offering strategic insights for future research and serving as a vital reference for advancing coastal management and salt marsh conservation strategies.

Differential mediation of biogeochemical processes through bioturbation by fiddler and sesarmid mangrove crabs

Macrobenthic bioturbation is vital to facilitate nutrient turnover in estuarine ecosystems and drives spatial heterogeneity in the sediment matrix. In this study, we compared the sediment physico-chemical properties, microbial community structure and functional genes in vertically-stratified sediment samples from bioturbated (burrows of Parasesarma bidens and Tubuca arcuata) and non-bioturbated area in mangrove ecosystems (the Hanjiang River Estuary, Southern China). The result indicated that bioturbation by P. bidens and T. arcuata had significantly different effects on sediment properties, with the action of P. bidens enhancing nutrient accumulation while T. arcuata promoted N2O emission. Burrow microhabitats harbored distinctive microbial communities although the dominant phylum and genera shared considerable similarity with the control sediment surface with Woeseia dominating in vertical profiles across different habitats. Co-occurrence network analysis revealed that crab bioturbation promoted formation of less complex but more functionally-specialized microbial communities. Crab bioturbation enhanced nutrient metabolism and separated clusters in dendrogram demonstrated the species-specific effect between P. bidens and T. arcuata. Our work verified the significance of bioturbators in regulating biogeochemical processes and highlighted the species-specific bioturbation effect between two dominant mangrove crabs (P. bidens vs. T. arcuata).

Freshwater snails (Bellamya aeruginosa) bioturbation to enhance nitrogen removal and associated mechanism in constructed wetlands

In this study, total nitrogen (TN) removal efficiency of Pontederia cordata and Myriophyllum elatinoides in surface flow constructed wetlands (SFCWs) with Bellamya aeruginosa were 6.43% and 3.54% higher, respectively, than those in non-B. aeruginosa SFCWs. Further, bioturbation could promote N uptake by plants and release from sediment. In summer and autumn, potential nitrification rate was significantly higher in SFCWs with snails than that in SFCWs without snails. In each season, potential denitrification rate was significantly higher in SFCWs with snails than that in SFCWs without snails. Additionally, ammonia oxidizing archaea, narG, nirS, nirK and nosZ gene abundances were significantly higher in SFCWs with snails than those in SFCWs without snails. Structural equation model analysis revealed a strong positive correlation between nitrifiers and denitrifiers in SFCWs with snails, suggesting that bioturbation enhanced N removal by increasing synergistic effect of nitrifying and denitrifying bacteria.

Comprehensive assessment of three crayfish culture modes: From production performance to environmental sustainability

Integrated agriculture-aquaculture has emerged as a promising ecological development model. Crayfish, a popular aquaculture species, are traditionally reared either in monoculture ponds (mono-C) or in rice-crayfish polyculture system (poly-RC). In this study, we introduced a novel polyculture system by combining fruit tree with crayfish (poly-FC), aiming to compare these three crayfish culture modes in terms of production performance and ecological sustainability. The results indicated that crayfish reared in the two polyculture modes exhibited significantly higher specific growth rate and condition factor compared to those in mono-C. Crayfish cultured in poly-FC also showed better muscle quality and higher levels of crude fat and flavor or essential amino acids. Isotope mixing model showed that feed and benthic animals were the primary food sources of crayfish in mono-C, whereas aquatic plants, fruit litter or rice contributed more to those in polyculture modes. For greenhouse gas emissions, poly-FC mode emitted almost no CO2 and N2O even favored negative CH4 emission, while poly-RC and mono-C modes showed positive emissions of CH4 and CO2, respectively. Supported by metagenomics, the sink of CH4 in poly-FC was probably due to the lower mcr abundance but the higher pmo abundance in water. The low production and emission of N2O in poly-FC might result from the low-abundant Nitrospirae_bacterium and its coding gene norC in sediment, consistent with the lower denitrification rate but the higher NO3- concentration than mono-C. Overall, our findings reveal the superiority of polyculture of fruit tree with crayfish in terms of production performance and greenhouse gas emissions in the system.

Machine learning prediction on wetland succession and the impact of artificial structures from a decade of field data

The artificial structures can influence wetland topology and sediment properties, thereby shaping plant distribution and composition. Macrobenthos composition was correlated with plant cover. Previous studies on the impact of artificial structures on plant distribution are scarce in incorporating time-series data or extended field surveys. In this study, a machine-learning-based species distribution model with decade-long observation was analyzed to investigate the correlation between the shift in the distribution of B. planiculmis, artificial structure-induced elevation changes and the expansion of other plants, as well as their connection to soil properties and crab composition dynamics under plants in Gaomei Wetland. Long short-term memory model (LSTM) with Shapley additive explanations (SHAP) was employed for predicting the distribution of B. planiculmis and explaining feature importance. The results indicated that wetland topology was influenced by both artificial structures and plants. Areas initially colonized by B. planiculmis were replaced by other species. Soil properties showed significant differences among plant patches; however, principal component analysis (PCA) of sediment properties and niche similarity analysis showed that the niche of plants was overlapped. Crab composition was different under different plants. The presence probability of B. planiculmis near woody paths decreased according to LSTM and field survey data. SHAP analysis suggested that the distribution of other plants, historical distribution of B. planiculmis and sediment properties significantly contributed to the presence probability of B. planiculmis. A sharp decrease in SHAP values with increasing NDVI at suitable elevations, overlap in PCA of sediment properties and niche similarity indicated potential competition among plants. This decade-long time-series field survey revealed the joint effects of artificial structure and vegetation on the topology and soil properties dynamics. These changes influenced the plant distribution through potential plant competition. LSTM with SHAP provided valuable insights in the underlying the mechanisms of artificial structure effects on the plant zonation process.

Effects of different concentrations and particle sizes of nanoplastics on gut microbiology, metabolism, and immunity in Chiromantes dehaani

This study investigated the effects of nanoplastics (NPs) of varying particle sizes (75, 500, and 1000 nm) and concentrations (2.5 and 10 mg/L) on the gut health of Chiromantes dehaani. The experimental groups included a control (Cg0), and varying combinations of particle size and concentration. Our results showed that 75 nm NPs were more likely to enhance pathogenic bacterial growth than other sized NPs. Compared with CK, Low NPs concentrations (2.5 mg/L) raised total cholesterol (T-CHO) levels in the gut, while high concentrations significantly decreased both triglyceride (TG) and T-CHO levels (p < 0.05). The enzymatic activities of intestinal lipase and amylase were inhibited by NPs exposure, with greater inhibition at higher NPs concentrations. The 500 nm NPs exhibited a notably higher inhibitory effect than the 75 and 1000 nm NPs (P < 0.05). In terms of apoptosis, NPs exposure led to reduced mRNA expression of Bcl2 and increased expression of Caspase-3, Caspase-8, and Caspase-9, indicating an induction of apoptosis. This effect was more pronounced at higher NPs concentrations, with 75 nm NPs more likely to induce apoptosis in intestinal cells than 500 nm and 1000 nm NPs. Moreover, NPs triggered intestinal inflammatory responses, evidenced by the increased mRNA expression of TNF-β, TNF-α, IL1β, IL6, and IL8, and the decreased expression of IL10. High NPs concentrations were more likely to induce intestinal inflammation, with 500 nm NPs imparting the strongest effect. In summary, the study demonstrated that NPs, and particularly those at higher concentrations, disrupted the gut environment of C. dehaani by altering the microflora, reducing microbial diversity, inhibiting digestion and metabolism, inducing apoptosis, and triggering inflammation. Among the sizes of NPs tested, 500 nm NPs had the most significant adverse impact on digestion, metabolism, and inflammation, while 75 nm NPs most strongly induced apoptosis in C. dehaani's intestinal cells.

Toxic effects of combined exposure to cadmium and diclofenac on freshwater crayfish (Procambarus clarkii): Insights from antioxidant enzyme activity, histopathology, and gut microbiome

In recent years, excessive discharge of pollutants has led to increasing concentrations of cadmium (Cd) and diclofenac (DCF) in water; however, the toxicity mechanism of combined exposure of the two pollutants to aquatic animals has not been fully studied. Procambarus clarkii is an economically important aquatic species that is easily affected by Cd and DCF. This study examined the effects of combined exposure to Cd and DCF on the tissue accumulation, physiology, biochemistry, and gut microflora of P. clarkii. The results showed that Cd and DCF accumulated in tissues in the order of hepatopancreas > gill > intestine > muscle. The hepatopancreas and intestines were subjected to severe oxidative stress, with significantly increased antioxidant enzyme activity. Pathological examination revealed lumen expansion and epithelial vacuolisation in the hepatopancreas and damage to the villous capillaries and wall in the intestine. The co-exposure to Cadmium (Cd) and Diclofenac (DCF) disrupts the Firmicutes/Bacteroidetes (F/B) ratio, impairing the regular functioning of intestinal microbiota in carbon (C) and nitrogen (N) cycling. This disturbance consequently hinders the absorption and utilization of energy and nutrients in Procambarus clarkii. This study offers critical insights into the toxicological mechanisms underlying the combined effects of Cd and DCF, and suggests potential approaches to alleviate their adverse impacts on aquatic ecosystems.

Microbial pathways of nitrous oxide emissions and mitigation approaches in drylands

Drylands refer to water scarcity and low nutrient levels, and their plant and biocrust distribution is highly diverse, making the microbial processes that shape dryland functionality particularly unique compared to other ecosystems. Drylands are constraint for sustainable agriculture and risk for food security, and expected to increase over time. Nitrous oxide (N2O), a potent greenhouse gas with ozone reduction potential, is significantly influenced by microbial communities in drylands. However, our understanding of the biological mechanisms and processes behind N2O emissions in these areas is limited, despite the fact that they highly account for total gaseous nitrogen (N) emissions on Earth. This review aims to illustrate the important biological pathways and microbial players that regulate N2O emissions in drylands, and explores how these pathways might be influenced by global changes for example N deposition, extreme weather events, and climate warming. Additionally, we propose a theoretical framework for manipulating the dryland microbial community to effectively reduce N2O emissions using evolving techniques that offer inordinate specificity and efficacy. By combining expertise from different disciplines, these exertions will facilitate the advancement of innovative and environmentally friendly microbiome-based solutions for future climate change vindication approaches.

Effect of bioturbation of the mitten crab on distribution of tire wear particles and their combined effect on sediment ecosystem

Tire wear particles (TWPs) are a major source of environmental microplastic pollution which gradually settle and accumulate in sediments after entering the aquatic environment, which can affect the behaviors of benthic organisms. Bioturbation of benthic species could affect the fate, impacts and potential risks of TWPs by altering the properties and structure of sediments. Therefore, in this study, the effect of TWPs on the burrowing activity of Chinese mitten crab (Eriocheir sinensis) was investigated. In addition, the effects of crab bioturbation on the distribution of TWPs and their additives were studied. The combined effects of TWPs and crab bioturbation on the microbial communities in the sediments were also explored. The results of this study showed that both TWPs and the leachate significantly inhibited the burrowing activity of crabs. TWPs in the surface layer of sediments were re-distributed by crab bioturbation and enriched mainly in the sediments near the burrow walls. Meanwhile, the heavy metals (i.e., Zn, Ca, Mg, Ba and Al) used as additives during the tire production in the burrow walls significantly increased as the accumulation of TWPs near burrow walls. In this study, TWP exposure decreased the bacterial diversity and abundance, as well as the functional genes related to carbon and nitrogen cycling process, but crab bioturbation increased them in the sediments of burrow walls by constructing a unique habitat. However, after TWPs entering into burrows, they were significantly decreased in the sediments near the burrow walls like the effects of TWPs, suggesting the negative effects of TWPs could play a dominant role in this combined system. Overall, this study is important for evaluating the distribution and effects of TWP pollution in the sediment ecosystem under biological factors such as bioturbation.

Microplastic contamination in the dominant crabs at the intertidal zone of Chongming Island, Yangtze Estuary

Crabs are one of the most critical and dominant species of the intertidal zone. Their feeding, burrowing, and other bioturbation activities are common and intense. However, baseline data on microplastic contamination in wild intertidal crabs are still lacking. In this study, we investigated the contamination of microplastics in the dominant crabs, Chiromantes dehaani, of the intertidal zone in Chongming Island, Yangtze Estuary, and explored their probable relationship with the microplastic composition in sediments. A total of 592 microplastic particles were observed in the crab tissues, with an abundance of 1.90 ± 0.53 items·g-1 (1.48 ± 0.45 items·ind-1). The microplastic contamination in the tissues of C. dehaani varied significantly among different sampling sites, organs, and size groups, but not among different sexes. Microplastics in C. dehaani were mainly rayon fibers with small sizes (<1000 μm). Their colors were mostly dark, which is consistent with the sediments samples. A linear regression showed significant correlations between the composition of microplastics in the crabs and that in sediments, although they differed in various crab organs and sediment layers. The target group index identified the feeding preference of C. dehaani on the microplastics with specific shapes, colors, sizes, and polymer types. In general, the microplastic contamination in crabs is affected by both objective environmental conditions and subjective feeding habits of crabs. In the future, more potential sources should be considered to completely distinguish the relationship between the microplastic contamination in crabs and adjacent environment.

Effect of humic acid-modified attapulgite on polycyclic aromatic hydrocarbon adsorption and release from paddy soil into the overlying water in a rice-crab coculture paddy ecosystem and the underlying process

Phenanthrene (Phe), a typical polycyclic aromatic hydrocarbon (PAH) pollutant, poses an enormous safety risk to rice-crab coculture (RC) paddy ecosystems. In this study, humic acid-modified purified attapulgite (HA-ATP) with a composite structure was successfully fabricated to adsorb PAHs released from paddy soil to overlying water in RC paddy ecosystems in Northeast China. The maximum crab bioturbation intensities for dissolved Phe and particulate Phe were 64.83nullng/L·(cm²·d) and 214.29nullng/L·(cm²·d), respectively. The highest concentration of dissolved Phe released from paddy soil to overlying water due to crab bioturbation reached 80.89nullng/L, while the corresponding concentration of particulate Phe reached 267.36nullng/L. The dissolved organic carbon (DOC) and total suspended solid (TSS) concentrations in overlying water increased correspondingly and were strongly correlated with dissolved Phe and particulate Phe concentrations, respectively (P < 0.05). When 6% HA-ATP was added to the surface layer of paddy soil, the efficiency of the adsorption of Phe release was 24.00%-36.38% for particulate Phe and 89.99%-91.91% for dissolved Phe. Because HA-ATP has a large adsorption pore size (11.33 nm) and surface area (82.41nullm²/g) as well as many HA functional groups, it provided multiple hydrophobic adsorption sites for dissolved Phe, which was conducive to competitive adsorption with DOC in the overlying water. In contrast to that adsorbed by DOC, the average proportion of dissolved Phe adsorbed by HA-ATP reached 90.55%, which reduced the dissolved Phe concentration in the overlying water. Furthermore, even though the particulate Phe was resuspended by crab bioturbation, HA-ATP immobilized particulate Phe due to its capacity to inhibit desorption, which achieved the goal of reducing the Phe concentration in the overlying water. This result was confirmed by research on the adsorption-desorption characteristics of HA-ATP. This research provides an environmentally friendly in situ remediation method for reducing agricultural environmental risks and improving rice crop quality.

Microorganisms in coastal wetland sediments: a review on microbial community structure, functional gene, and environmental potential

Coastal wetlands (CW) are the junction of the terrestrial and marine ecosystems and have special ecological compositions and functions, which are important for maintaining biogeochemical cycles. Microorganisms inhabiting in sediments play key roles in the material cycle of CW. Due to the variable environment of CW and the fact that most CW are affected by human activities and climate change, CW are severely degraded. In-depth understanding of the community structure, function, and environmental potential of microorganisms in CW sediments is essential for wetland restoration and function enhancement. Therefore, this paper summarizes microbial community structure and its influencing factors, discusses the change patterns of microbial functional genes, reveals the potential environmental functions of microorganisms, and further proposes future prospects about CW studies. These results provide some important references for promoting the application of microorganisms in material cycling and pollution remediation of CW.

Application of spray-dried erythromycin fermentation residue as a soil amendment: antibiotic resistance genes, nitrogen cycling, and microbial community structure

Erythromycin fermentation residue (EFR) after spray drying could be reused as a soil amendment. However, the effects of spray-dried EFR on antibiotic resistance genes (ARGs), nitrogen cycling, and microbial community structure in soil are rarely reported. In this study, a pot experiment was conducted by adding spray-dried EFR to soil. For the application of 1.0% spray-dried EFR, the residual erythromycin (ERY) could be rapidly removed with the half-life of 22.2 d; the total relative abundance of ARGs increased at first, but decreased to the initial level of the control group in the end; genes related to ammonium assimilation (glnA, gltB, gltD), ammonification (gdhA, gudB, cynT, cynS, ncd2), denitrification (narI, narG, narH), assimilatory nitrate reduction (nirA, nasA), and dissimilatory nitrate reduction (nirD) were enriched; soil microbial community structure presented temporary variation. Network analysis showed significant negative correlations between ARGs and nitrogen cycling genes. The addition of 6.0% spray-dried EFR resulted in the amplification of ARGs and inhibition of nitrogen cycling. This work provides new insights into the effects of spray-dried EFR on ARGs, nitrogen cycling, and microbial community structure within the fertilized soil.

Quantitative comparison of clamworm (Perinereis aibuhitensis) and crab (Macrophthalmus japonicus) burrowing effects on nitrogen and phosphorus dynamics at the sediment-water interface

Exploring nitrogen and phosphorus dynamics in estuarine ecosystems is of great significance for understanding the nutrient cycle in terrestrial and marine ecosystems. However, the ecological functions of common species remain unclear because there is a dearth of observational data. To quantitatively compare the bioturbation effects of the clamworm Perinereis aibuhitensis and crab Macrophthalmus japonicus on the migration of nitrogen and phosphorus in the sediment-pore water-overlying water interfaces, an indoor experiment was carried out using microcosms containing substrate, water, and living specimens collected from the Dagu Estuary, China. The physical structure of the sediments was greatly altered by both clamworms and crabs, and the amount of suspended particulate matter in the overlying water was in the order: crab > clamworm > control groups. Sediments, especially the 0-2 cm layer, were continuously mineralized under bioturbation, releasing NH₃-N, NO₂^--N, NO₃^--N, and dissolved total phosphorus. During the experiment, the release rate of NH₃-N (2.45 mg L^-1 to 10.23 mg L^-1), NO₂^--N (0.25 mg L^-1 to 7.34 mg L^-1), NO₃^--N (0.02 mg L^-1 to 6.03 mg L^-1), and dissolved total phosphorus (0.07 mg L^-1 to 0.16 mg L^-1) in the crab group was higher than that in the clamworm group (NH₃-N, 0.93 mg L^-1 to 6.11 mg L^-1; NO₂^--N, 0.51 mg L^-1 to 6.18 mg L^-1; NO₃^--N, 0.01 mg L^-1 to 5.24 mg L^-1, and dissolved total P, 0.04 mg L^-1 to 0.08 mg L^-1). Our findings indicate that crabs might play a more important role in promoting nitrogen and phosphorus migration than clamworms because of their stronger bioturbation strategies in sediments. Bioturbation by both clamworms and crabs reduced nitrogen and phosphorus accumulation in surface sediments and accelerated organic matter mineralization in the sediments, which may promote nutrient recycling in estuarine ecosystems.

Application of an integrated loach-plant-substrate-microbes non-aerated saturated vertical flow constructed wetlands: Mechanisms of pollutants removal and greenhouse gases reduction

This study established an integrated loach-plant-substrate-microbes non-aerated saturated vertical flow constructed wetlands (VFCWs) to enhance pollutants removal efficiencies and reduce greenhouse gas emissions simultaneously. The results of the VFCWs experiment indicated that the removal efficiencies of chemical oxygen demand, total phosphorous, and total nitrogen in loach systems were significantly higher than those of non-loach systems, achieving 59.16%, 35.98%, and 40.96%, respectively. The CH₄ and N₂O emission fluxes were also significantly reduced in the integrated system, resulting in lower global warming potential (GWP) and GWP per unit of pollutants removal. Loaches promoted the transportation of oxygen, facilitated the re-contact and utilization of sediments, reduced CH₄ emission, and enhanced nitrogen conversion and phosphorus accumulation. Increased bioavailable carbon and nitrate-nitrogen in the integrated system improved the abundance of denitrifying bacteria, which supported complete denitrification, reducing N₂O emissions with high pollutant removal.

Crab bioturbation affects competition between microbial nitrogen removal and retention in estuarine and coastal wetlands

As the important benthic animal in coastal wetlands, crab bioturbation may significantly affect the nitrogen (N) budgets by regulating microbial N transformation processes. However, the response of interaction between different microbial N processes to crab bioturbation remains poorly understood. Here, a 30-day microcosmic experiment was conducted using sediment collected from the Yangtze Estuary wetland, followed by the determination of temporal variations of physicochemical parameters, N removal (denitrification plus anammox, which is defined as N₂ production) and retention rates (nitrate dissimilatory reduction to ammonium, DNRA) as well as relevant gene abundances in response to different crabs densities. The results showed that crab bioturbation simultaneously promoted the rates of N₂ production and DNRA processes. These two process rates were positively associated with the intensity of crab bioturbation, which was supported by molecular analysis of relevant functional gene abundance. Crab bioturbation was more beneficial to DNRA than N₂ production. Due to this disproportionate stimulation, crab bioturbation increased the importance of DNRA, indicating that N retention was becoming more significant under crab bioturbation in estuarine and coastal wetlands. The variations of sediment total organic carbon and oxygen availability driven by crab bioturbation were the critical factors mediating the changes in microbial N removal and retention. Overall, our findings highlighted that crab bioturbation can affect the N budgets in estuarine and coastal wetlands by altering the competition between microbial N removal and retention.

Impact and microbial mechanism of continuous nanoplastics exposure on the urban wastewater treatment process

Contamination by nanoplastics in urban water has aroused increasing concern. The impact of nanoplastic exposure on the wastewater treatment process in the long term is still unclear. This study investigated the effect of continuous nanoplastic exposure (R1:0, R2:10, R3:100, and R4:1000 μg/L) on the nitrification and denitrification processes for over 200 days in a sequencing batch reactor (SBR). The results revealed that nanoplastic exposure does not demonstrate significant inhibition of total nitrogen removal. The ammonia oxidation rate (19.24 ± 0.01 mgN/gMLVSS/h, p < 0.05) and denitrification rate (11.78 ± 0.11 mgN/ gMLVSS/h, p < 0.05) in R4 was significantly lower than the control (R1: 0 μg/L). The maximal reaction velocities of N₂O reduction (Vmax) were improved after long-term exposure to nanoplastics in high concentrations. The R3 demonstrated the highest Vmax value-six times higher than R4 and approximately 20 times higher than R1 and R2. The microbial structure largely varied with the exposure to nanoplastics, where the exposure to a high concentration largely suppressed the nitrifier and selectively enriched the denitrifier. The percentage of the top 20 genera of denitrifiers increased from 31.76% to 63.42%, and the nitrifiers decreased from an initial 12.40% to 2.83% for R4. The predominant genera were found to be Thauera, Azoarcus, and Defluviicoccus in R4 and R3 which indicated their tolerance to nanoplastics. The function prediction results indicated that the membrane transport function was significantly enhanced and the lipid metabolism function was significantly reduced in R4 as compared with the control (R1, p<0.05). This may be attributed to the adsorption of nanoplastics on bacteria. Observation under a scan electronic microscope demonstrated that the nanoplastics were firmly attached to the microbe surface and aggregated in activated sludge at high nanoplastics dosed reactor. These results deepen the understanding of the effect of nanoplastics on the urban wastewater treatment process and provide valuable information for the management of nanoplastic contamination in urban wastewater.

Sediment Nitrate Dissimilatory Reduction Processes along a Salinity Gradient in an Estuarine and Coastal Wetland, China

Nitrate (NO3−) dissimilatory reduction processes (denitrification, anammox and dissimilatory NO3− reduction to ammonium (DNRA)) in estuarine and coastal ecosystems play a crucial role in regulating reactive nitrogen loadings. However, nitrate reduction process rates and relative proportions along the estuarine salinity gradient remain poorly understood. Here, denitrification, anammox and DNRA were explored simultaneously along a salinity gradient in Yangtze Estuary based on nitrogen isotope-tracing experiments. Measured denitrification, anammox and DNRA process rates were in the range of 2.33–28.21 nmol g−1 h−1, 0.43–1.87 nmol g−1 h−1 and 0.28–0.74 nmol g−1 h−1, respectively, with a large spatio-temporal variation. The changes in these nitrate reduction process rates were mainly affected by the TOC, TN, NH4+ and NOx− concentrations, rather than salinity and related functional gene abundance. Denitrification dominated the total NO3− reduction process (67.52 to 93.85%), while anammox (3.67 to 25.01%) and DNRA (2.48 to 11.21%) also played a substantially important role in nitrate reduction. The proportions of denitrification to gross nitrate reduction in high-salinity areas were generally lower than those in freshwater, but the opposite was true for DNRA. Overall, our study reported the simultaneous observation of nitrate dissimilatory reduction processes along the salinity gradient of the estuary and highlighted that changes in sediment environmental variables affected by human activities can alter the distribution patterns of NO3− reduction processes.

Effects of Aquatic Acidification on Microbially Mediated Nitrogen Removal in Estuarine and Coastal Environments

Acidification of estuarine and coastal waters is anticipated to influence nitrogen (N) removal processes, which are critical pathways for eliminating excess N from these ecosystems. We found that denitrification rates decreased significantly under acidified conditions (P < 0.05), which reduced by 41-53% in estuarine and coastal sediments under an approximately 0.3 pH reduction of the overlying water. However, the N removal rates through the anaerobic ammonium oxidation (anammox) process were concomitantly promoted under the same acidification conditions (increased by 47-109%, P < 0.05), whereas the total rates of N loss were significantly inhibited by aquatic acidification (P < 0.05), as denitrification remained the dominant N removal pathway. More importantly, the emission of nitrous oxide (N₂O) from estuarine and coastal sediments was greatly stimulated by aquatic acidification (P < 0.05). Molecular analyses further demonstrated that aquatic acidification also altered the functional microbial communities in estuarine and coastal sediments; and the abundance of denitrifiers was significantly reduced (P < 0.05), while the abundance of anammox bacteria remained relatively stable. Collectively, this study reveals the effects of acidification on N removal processes and the underlying mechanisms and suggests that the intensifying acidification in estuarine and coastal waters might reduce the N removal function of these ecosystems, exacerbate eutrophication, and accelerate global climate change.

A two-year measurement of methane and nitrous oxide emissions from freshwater aquaculture ponds: Affected by aquaculture species, stocking and water management

Aquaculture ponds are of increasing worldwide concerns as critical sources of atmospheric methane (CH₄) and nitrous oxide (N₂O), but little is known about these gases emissions as affected by aquaculture species, stocking and water management in aquaculture ponds. Here, a two-year study was carried out to quantify CH₄ and N₂O emissions from freshwater crab and fish aquaculture ponds in subtropical China. We further explored how the microbial functional genes [CH₄: mcrA and pmoA; N₂O: archaeal and bacterial amoA (AOA + AOB), nirS, nirK, nosZ] may drive CH₄ and N₂O release in the crab aquaculture pond typically undergoing flooding-to-drainage alteration. Over the two-year period, annual CH₄ and N₂O fluxes averaged 0.95 mg m^-2 h^-1 and 20.94 μg m^-2 h^-1 in the fish aquaculture, and 0.78 mg m^-2 h^-1and 28.48 μg m^-2 h^-1 in the crab aquaculture, respectively. The direct N₂O emission factors were estimated to be 0.77% and 0.36% of the total N input by feed or 1.59 g N₂O-N kg^-1 and 1.06 g N₂O-N kg^-1 aquaculture yield in the crab and fish ponds, respectively. Among three functional stocking areas, CH₄ and N₂O emissions were consistently the highest at the feeding area (FA) in the both aquaculture ponds, followed by at the undisturbed area (UA) and aerated area (AA). The shift in sediment soil moisture from waterlogging to drainage conditions significantly increased the abundance of AOB relative to AOA and pmoA, decreased those of denitrifying functional genes (nirS, nirK, nosZ) and mcrA, while did not alter the functional group ratio of nirS + nirK relative to nosZ. Our results highlight that a better understanding of CH₄ and N₂O emissions from aquaculture ponds requires taking into consideration of data sourced from more diverse aquaculture systems with different management patterns. In addition, a deep analysis of the microbial processes that drive CH₄ and N₂O production and consumption from aquaculture ponds remains to be addressed in future studies.