Denitrification and dissimilatory nitrate reduction to ammonia in long-term lake sediment microcosms with iron(II)

Effect of iron-carbon microelectrolysis and magnetite on biological nitrogen removal: Analysis of microbial communities, functional genes, and mechanisms

Iron-carbon microelectrolysis (IC-ME) is a highly effective approach for achieving efficient denitrogenation in low carbon-to-nitrogen (C/N) ratio wastewater; however, its mechanism and electron transfer pathways remain unclear. This study developed iron-carbon fillers with added magnetite (Fe3O4) to investigate the influence of Fe3O4 and IC-ME on biological denitrification under varying C/N ratios. In batch experiments, the experimental group achieved an average total nitrogen removal improvement of 20.45% and 31.80%, respectively, compared to the control group at a simulated wastewater C/N ratio of 3. When compared to the sequencing batch reactor (SBR) without fillers, the SBR with iron-carbon fillers demonstrated a 22.50% increase in average total nitrogen removal. Additionally, activities of Cyt-c, complex I, and complex III significantly increased when the influent water C/N ratio was reduced to 3. The structural composition of the microbial community exhibited an abundance of denitrifying microorganisms, including Pseudomonadota, Betaproteobacteria, and Gammaproteobacteria, alongside iron-autotrophic denitrifying microorganisms such as Acidovorax and Pseudoxanthomonas. Moreover, the genes narG, nirS, and nosZ showed increased abundance, with most genes becoming progressively more abundant as the C/N ratio decreased. This study aims to provide valuable insights for energy conservation and carbon reduction in wastewater treatment plants facing limited carbon sources.

Spatial distribution of potential nitrogen reduction rates and associated microbial communities revealed by metagenomic analysis in Yangtze River sediments

Understanding the intricacies of nitrogen reduction processes and the composition of associated microbial communities is crucial for illuminating the reactions of ecosystems and their functions to persistent nitrogen inputs. To enhance research on the nitrogen reduction process, we determined the potential rates, quantified the relevant genes, and analyzed the macro factors in the sediments of the Yangtze River. The results showed that dissimilatory reduction of nitrate to ammonium (DNRA) dominated the N-reduction processes in the Yangtze River sediment, with average rates of 0.89 ± 0.71 nmol N g-1 h-1. Meanwhile, denitrification and anammox rates were 0.73 ± 0.74 and 0.07 ± 0.07 nmol N g-1 h-1, respectively. The Three Gorges Dam (TGD) caused higher potential rates (nmol N g-1 h-1) of denitrification (1.38), anammox (0.12), DNRA (1.48), and N2O depletion (1.49 nmol g-1 h-1) in the Three Gorges Reservoir (TGR) compared to other river reaches. The average copy numbers (copies·g-1) of nrfA (2.96 × 106), narG (8.17 × 105), nirS (6.10 × 106), nosZ (2.77 × 106), and hzsB (3.68 × 105) in TGR sediments were higher than those in the other reaches. The TGD's interception of fine sediments and nutrients enhanced microbial gene abundance, thereby favoring N-reduction processes and resulting in N2O depletion in reservoir sediments. Moreover, the TGD caused a decreased contribution gap between DNRA and denitrification in the TGR (2%) compared with the upper (35%) and lower (18%) reaches, while causing predominant anammox (50%) in the middle reach. Metagenomic results suggested that sediment particle size, along with organic carbon and inorganic nitrogen concentrations, influenced N reduction rates by affecting narG, norB and C, nrfA and H, and hzsB and C. This study reveals the spatial pattern of the N-reduction rate in the Yangtze River sediments and quantitatively defines the intensity of dam effects on sediment N-reduction rate.

Fe and Mn biogeochemical cycling associated with basin-scale redox dynamics traced by DOM degradation in different alluvial aquifers

Iron (Fe) and manganese (Mn) contamination in groundwater has emerged as a global health challenge, primarily influenced by the degradation pathways of organic matter. However, the understanding of Fe and Mn biogeochemical behaviors, particularly the release mechanisms driven by the redox dynamics of aquifers at the watershed scale remains limited. This investigation employed a multi-method framework integrating hydrogeochemical-isotopic analyses with DOM molecular characterization (FT-ICR MS) to elucidate DOM degradation processes along the groundwater flow paths and their driving effects on Fe and Mn mobilization. The findings revealed that DOM degradation significantly modulates the redox zoning in porous aquifers, thereby governing the release patterns of Fe and Mn. In the weakly oxidizing environment (Zone I), DOM derivatives exhibited intricate molecular structures, characterized by higher relative abundances of saturated compounds, aliphatic species, and polyphenols compared to the downstream area. Fe and Mn primarily originate from the water-rock interactions, and tend to form stable DOM-metal complexes under oxidizing aquifers that constrain the concentration of dissolved metals. As groundwater flows into the plain area (Zone II) where the aquifers gradually become anaerobic, enclosed sedimentary aquifers and sluggish groundwater runoff intertwine highly mineralized DOM with biogeochemical processes. The preferential utilization of DOM with higher NOSC values drives sequential anaerobic respiration from sulfate reduction to dissimilatory metal reduction. This redox cascade promoted extensive dissolution of Fe and Mn (oxy)hydroxides. Intriguingly, methanogenic-phase DOM fermentation in Zone II-XKR activated anaerobic methane oxidation, generating a secondary Fe and Mn mobilization pathway. This process augmented the efficiency of metal release, resulting in Fe and Mn concentration in the Zone II-XKR being 2-3 times higher than those in the WLR subzones. Our findings establish DOM molecular signatures coupled with δ13C-DIC isotopic tracers as indicators for deciphering redox gradient biogeochemistry. The proposed model deepens the understanding of metal-cycling mechanisms and provides an informative framework for the genesis of high Fe and Mn groundwater in alluvial plains.

Influences of fluctuating nutrient loadings on nitrate-reducing microorganisms in rivers

Rivers serve important functions for human society and are significantly impacted by anthropogenic nutrient inputs (e.g. organic and sulfur compounds). Reduced organic and sulfur compounds influence the nitrogen cycle as they are electron donors of microbial nitrate reduction. Water pollution caused by individual nutrients and the mechanisms have been studied, but how the variation in multiple nutrient loadings influences nitrate-reducing microorganisms is less understood. Two sets of microcosms were established and exposed to nitrate, along with either acetate or thiosulfate, at different times. Nutrient concentrations responded to the loading pollutant. The nutrient loading order was more important in shaping microbial community structure and microbial interactions through the exchange of growth-required substances. This indicated that upstream or historical nutrient inflows impacted current nitrate reduction by changing the seeding microbial community, highlighting the importance of river connectivity. Based on metatranscriptome analysis, although the order and type of nutrient loadings were equally important in regulating global transcriptomes, transcripts of enzymes for key metabolisms (nitrate reduction, sulfur oxidation, etc.) more actively responded to the nutrient type. The regulation of a small set of genes was sufficient to make the transition, while most transcripts were not degraded and regenerated. These insights are important for understanding the varying pollution status of rivers and for developing effective solutions, such as remediation.

Community Assembly Mechanisms of nirK- and nirS-type Denitrifying Bacteria in Sediments of Eutrophic Lake Taihu, China

Denitrifying bacteria, particularly nirK- and nirS-type, are functionally equivalent and could occupy different niches, but their community assembly mechanisms and responses to environmental heterogeneity are poorly understood in eutrophic lakes. In this study, we investigated the community assembly mechanisms of nirK- and nirS-type denitrifying bacteria and clarified their responses to sediments environmental factors in Lake Taihu, China. The quantitative real-time PCR and Illumina HiSeq-based sequencing revealed that the abundance and composition of two types of denitrifying bacterial communities varied among different sites in the sediments of Lake Taihu. The functions of these two types of denitrifying bacteria were assigned to mainly nitrogen cycling along with carbon, oxygen, and sulfur cycling, indicating their diverse ecosystems functions. Neutral community model showed that majority of nirK- and nirS-type denitrifying bacteria were neutrally distributed, while dispersal and selection were the dominant drivers in shaping community assembly of nirK-type bacteria. The community assembly of nirS-type was mainly driven by homogeneous selection. We found complex network interactions between nirK- and nirS-type denitrifying bacteria with other bacterial communities, indicating the importance of other bacterial coexistence for ecosystem functions by denitrifying bacteria in lake sediments. Keystone taxa of other bacteria showed the highest interactions with denitrifying bacteria; further, a strong significant correlation between keystone taxa with environmental factors and sediment enzyme content revealed by Mantel tests. Specially, total phosphorous was the key environmental factor determining the composition and diversity of nirK and nirS-type denitrifying bacteria in lake sediments, whereas NAR, AmoA, and NIR were the key reductase enzymes directly or indirectly affected to them. Our results provide significant insights into understanding the effects of changing nirK- and nirS-type denitrifying bacterial diversities and underlying community assembly mechanisms under changing environmental conditions in eutrophic lake ecosystems.

Comparative analysis of sulfur-driven autotrophic denitrification for pilot-scale application: Pollutant removal performance and metagenomic function

Two parallel pilot-scale reactors were operated to investigate pollutant removal performance and metabolic pathways in elemental sulfur-driven autotrophic denitrification (SDAD) process under low temperature and after addition of external electron donors. The results showed that low temperature slightly inhibited SDAD (average total nitrogen removal of ∼4.7 mg L-1) while supplement of sodium thiosulfate (stage 2) and sodium acetate (stage 3) enhanced denitrification and secretion of extracellular polymeric substances (EPS), leading to the average removal rate of 0.75 and 1.01 kg N m-3 d-1, respectively with over twice higher total EPS. Correspondingly, nitrogen and sulfur related microbial metabolisms especially nitrite reductase and nitric oxide reductase encoding were promoted by genera including Thermomonas and Thiobacillus. The variations revealed that extra sodium acetate improved denitrification and enriched more SDAD-related microorganisms compared with sodium thiosulfate, which potentially catalyzed the refinement of practical strategies for optimizing denitrification in low carbon to nitrogen ratio wastewater treatment.

Exploring the distribution and co-occurrence of rpf-like genes and nitrogen-cycling genes in water reservoir sediments

Water reservoir sediments represent a distinct habitat that harbors diverse microbial resources crucial for nitrogen cycling processes. The discovery of resuscitation promoting factor (Rpf) has been recognized as a crucial development in understanding the potential of microbial populations. However, our understanding of the relationship between microorganisms containing rpf-like genes and nitrogen-cycling functional populations remains limited. The present study explored the distribution patterns of rpf-like genes and nitrogen-cycling genes in various water reservoir sediments, along with their correlation with environmental factors. Additionally, the co-occurrence of rpf-like genes with genes associated with the nitrogen cycle and viable but non-culturable (VBNC) formation was investigated. The findings indicated the ubiquitous occurrence of Rpf-like domains and their related genes in the examined reservoir sediments. Notably, rpf-like genes were predominantly associated with Bradyrhizobium, Nitrospira, and Anaeromyxobacter, with pH emerging as the primary influencing factor for their distribution. Genera such as Nitrospira, Bradyrhizobium, Anaeromyxobacter, and Dechloromonas harbor the majority of nitrogen-cycling functional genes, particularly denitrification genes. The distribution of nitrogen-cycling microbial communities in the reservoir sediments was mainly influenced by pH and NH4 +. Notably, correlation network analysis revealed close connections between microorganisms containing rpf-like genes and nitrogen-cycling functional populations, as well as VBNC bacteria. These findings offer new insights into the prevalence of rpf-like genes in the water reservoir sediments and their correlation with nitrogen-cycling microbial communities, enhancing our understanding of the significant potential of microbial nitrogen cycling.

Diversity and ecology of NrfA-dependent ammonifying microorganisms

Nitrate ammonifiers are a taxonomically diverse group of microorganisms that reduce nitrate to ammonium, which is released, and thereby contribute to the retention of nitrogen in ecosystems. Despite their importance for understanding the fate of nitrate, they remain a largely overlooked group in the nitrogen cycle. Here, we present the latest advances on free-living microorganisms using NrfA to reduce nitrite during ammonification. We describe their diversity and ecology in terrestrial and aquatic environments, as well as the environmental factors influencing the competition for nitrate with denitrifiers that reduce nitrate to gaseous nitrogen species, including the greenhouse gas nitrous oxide (N2O). We further review the capacity of ammonifiers for other redox reactions, showing that they likely play multiple roles in the cycling of elements.

Driving mechanism of different nutrient conditions on microbial mediated nitrate reduction in magnetite-present river infiltration zone

Significant research is focused on the ability of riparian zones to reduce groundwater nitrate contamination. Owing to the extremely high redox activity of nitrate, naturally existing electron donors, such as organic matter and iron minerals, are crucial in facilitating nitrate reduction in the riparian zone. Here, we examined the coexistence of magnetite, an iron mineral, and nitrate, a frequently observed coexisting system in sediments, to investigate nitrate reduction features at various C/N ratios and evaluate the response of microbial communities to these settings. Additionally, we aimed to use this information as a foundation for examining the effect of nutritional conditions on the nitrate reduction process in magnetite-present environments. These results emphasise the significance of organic matter in enabling dissimilatory nitrate reduction to ammonium (DNRA) and enhancing the connection between nitrate reduction and iron in sedimentary environments. In the later phases of nitrate reduction, nitrogen fixation was the prevailing process in low-carbon environments, whereas high-carbon environments tended to facilitate the breakdown of organic nitrogen. High-throughput sequencing analysis revealed a robust association between C/N ratios and alterations in microbial community composition, providing insights into notable modifications in essential functioning microorganisms. The nitrogen-fixing bacterium Ralstonia is more abundant in ecosystems with scarce organic matter. In contrast, in settings rich in organic matter, microorganisms, such as Acinetobacter and Clostridia, which may produce ammonia, play crucial roles. Moreover, the population of iron bacteria grows in such an environment. Hence, this study proposes that C/N ratios can influence Fe(II)/Fe(III) conversions and simultaneously affect the process of nitrate reduction by shaping the composition of specific microbial communities.

Solute transport characteristics at the lakebed sediment-water interface due to multiple influences of dual seasonal lakes

Multiple coexisting seasonal lakes are observed in the Poyang Lake basin. The interaction between surface water and groundwater, along with solute transport at the sediment-water interface (SWI), plays a crucial role in material cycling within the Poyang Lake ecosystem. However, the mechanisms governing how the relative positions of these lakes influence solute transport at the SWI remain unclear. This study employs indoor experiments and simulations based on real topography to investigate how the separation distance and elevation differences between two seasonal lakes, termed "lake A" (situated farther from the main lake) and "lake B" (closer to the main lake), affect solute transport. Findings highlight a distinct recharge pattern from lake A to lake B and the main lake during periodic water level fluctuations. A reduced distance between dual seasonal lakes results in a diminished water level drop in lake B during dry seasons. Proximity allows lake A to contribute more solutes to the main lake while promoting solute transport from lake B to the main lake, increasing the pore water recharge flux to overlying water in lake B. In cases where the separation distance has insufficient impact on water levels, the speed of pore water flow in this area inversely correlates with the distance between dual lakes. Reducing the distance intensifies solute transport into the bottom of lake A. Lower the elevation of lake B increases the water level difference between dual seasonal lakes, curtailing pollution within the lakebed. Elevating lake B forms hydrological isolation and more severe pollution of the lakebed. Solutes predominantly transport between lake B and the main lake, with pollution spreading to the lakebed of lake A and transitioning to downward diffusion over time. This research provides valuable insights for the hydraulic regulation of seasonal lakes and holds significance for the ecological restoration of Poyang Lake.

Microplastics strengthen nitrogen retention by intensifying nitrogen limitation in mangrove ecosystem sediments

Mangrove wetlands are hotspots of the global nitrogen (N) cycle and important sinks of microplastics (MPs) due to their ecotone location between terrestrial and marine ecosystems. However, the effects of MPs on N cycle processes in mangrove ecosystems are still poorly understood. Thus, the present study assessed the impacts by adding MPs to mangrove sediments in a microcosm incubation experiment. The results showed that MPs increased dissolved organic carbon and nitrate but reduced ammonium contents in the sediments. MPs increased C:N stoichiometric and N:C-acquiring enzymatic ratios, indicating an intensified N limitation in mangrove sediments following exposure of MPs. MPs decreased microbial community diversity and shifted sediment microbial communities from r- to K-strategists, consistent with the intensified N limitation. In response, dissimilatory nitrate reduction to ammonium (DNRA) rates increased while nitrous oxide (N2O) production reduced suggesting more efficient N utilization in MPs treatments. The MPs with heteroatoms such as PLA- and PVC-MPs, increased DNRA rates by 67.5-78.7%, exhibiting a stronger impact than PE-MPs. The variation partitioning analysis revealed that the variances of DNRA rates and N2O production could be attributed to synergistic effects of physicochemical properties, nutrient limitation, and microbial community in mangrove sediments. Overall, this study provides pertinent insights into the impacts of MPs as a new carbon source on nutrient limitation and N turnover in mangrove ecosystems.

Denitrification dominates dissimilatory nitrate reduction across global natural ecosystems

Denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonium (DNRA) are three competing processes of microbial nitrate reduction that determine the degree of ecosystem nitrogen (N) loss versus recycling. However, the global patterns and drivers of relative contributions of these N cycling processes to soil or sediment nitrate reduction remain unknown, limiting our understanding of the global N balance and management. Here, we compiled a global dataset of 1570 observations from a wide range of terrestrial and aquatic ecosystems. We found that denitrification contributed up to 66.1% of total nitrate reduction globally, being significantly greater in estuarine and coastal ecosystems. Anammox and DNRA could account for 12.7% and 21.2% of total nitrate reduction, respectively. The contribution of denitrification to nitrate reduction increased with longitude, while the contribution of anammox and DNRA decreased. The local environmental factors controlling the relative contributions of the three N cycling processes to nitrate reduction included the concentrations of soil organic carbon, ammonium, nitrate, and ferrous iron. Our results underline the dominant role of denitrification over anammox and DNRA in ecosystem nitrate transformation, which is crucial to improving the current global soil N cycle model and achieving sustainable N management.

Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments

The global nitrogen (N) cycle has been strongly altered by anthropogenic activities, including increased input of bioavailable N into aquatic ecosystems. Freshwater sediments are hotspots with regards to the turnover and elimination of fixed N, yet the environmental controls on the microbial pathways involved in benthic N removal are not fully understood. Here, we analyze the abundance and expression of microbial genes involved in N transformations using metagenomics and -transcriptomics across sediments of 12 Swiss lakes that differ in sedimentation rates and trophic regimes. Our results indicate that microbial N loss in these sediments is primarily driven by nitrification coupled to denitrification. N-transformation gene compositions indicated three groups of lakes: agriculture-influenced lakes characterized by rapid depletion of oxidants in the sediment porewater, pristine-alpine lakes with relatively deep sedimentary penetration of oxygen and nitrate, and large, deep lakes with intermediate porewater hydrochemical properties. Sedimentary organic matter (OM) characteristics showed the strongest correlations with the community structure of microbial N-cycling communities. Most transformation pathways were expressed, but expression deviated from gene abundance and did not correlate with benthic geochemistry. Cryptic N-cycling may maintain transcriptional activity even when substrate levels are below detection. Sediments of large, deep lakes generally showed lower in-situ N gene expression than agriculture-influenced lakes, and half of the pristine-alpine lakes. This implies that prolonged OM mineralization in the water column can lead to the suppression of benthic N gene expression.

Fe(II) Oxidation Shaped Functional Genes and Bacteria Involved in Denitrification and Dissimilatory Nitrate Reduction to Ammonium from Different Paddy Soils

Microbial nitrate reduction can drive Fe(II) oxidation in anoxic environments, affecting the nitrous oxide emission and ammonium availability. The nitrate-reducing Fe(II) oxidation usually causes severe cell encrustation via chemodenitrification and potentially inhibits bacterial activity due to the blocking effect of secondary minerals. However, it remains unclear how Fe(II) oxidation and subsequent cell encrustation affect the functional genes and bacteria for denitrification and dissimilatory nitrate reduction to ammonium (DNRA). Here, bacteria were enriched from different paddy soils with and without Fe(II) under nitrate-reducing conditions. Fe(II) addition decelerated nitrate reduction and increased NO2- accumulation, due to the rapid Fe(II) oxidation and cell encrustation in the periplasm and on the cell surface. The N2O accumulation was lower in the treatment with Fe(II) and nitrate than that in the treatment with nitrate only, although the proportions of N2O and NH4+ to the reduced NO3- were low (3.25% ∼ 6.51%) at the end of incubation regardless of Fe(II) addition. The dominant bacteria varied from soils under nitrate-reducing conditions, while Fe(II) addition shaped a similar microbial community, including Dechloromonas, Azospira, and Pseudomonas. Fe(II) addition increased the relative abundance of napAB, nirS, norBC, nosZ, and nirBD genes but decreased that of narG and nrfA, suggesting that Fe(II) oxidation favored denitrification in the periplasm and NO2--to-NH4+ reduction in the cytoplasm. Dechloromonas dominated the NO2--to-N2O reduction, while Thauera mediated the periplasmic nitrate reduction and cytoplasmic NO2--to-NH4+ during Fe(II) oxidation. However, Thauera showed much lower abundance than the dominant genera, resulting in slow nitrate reduction and limited NH4+ production. These findings provide new insights into the response of denitrification and DNRA bacteria to Fe(II) oxidation and cell encrustation in anoxic environments.

Life strategies and metabolic interactions of core microbes during thiosulphate-based denitrification

Sulphur-driven denitrification is a low-cost process for the treatment of nitrate-contaminated water. However, a comprehensive understanding of core populations and microbial interactions of a sulphur-based denitrifying system is lacking. This study presents results from three replicated denitrifying systems amended with thiosulphate and operated under a low C/N ratio. Amplicon sequencing revealed gradual enrichments of a few abundant denitrifiers. Based on genome-centred metagenomics and metatranscriptomics, a core set of microbes was identified in the systems, with Pseudomonas 1 and Thauera 2 being the most abundant ones. Although the replicates showed different enrichments, generalized observations were summarized. Most core populations conserved energy from denitrification coupled with sulphur. Pseudomonas 1 and Thauera 2 were able to finish complete denitrification. Surprisingly, they were also able to synthesize almost all amino acids and vitamins. In contrast, less abundant members, including Pseudomonas 2, were relatively auxotrophic and required an exogenous supply of amino acids and vitamins. The high expression of enzymes involved in biosynthesis and transport systems indicated their syntrophic relationships. The genomic findings suggested life strategies and interactions of the core thiosulphate-based denitrifying microbiome, with implications for nitrate-polluted water remediation.

Characterization and genomics identification of key genes involved in denitrification-DNRA-nitrification pathway of plant growth-promoting rhizobacteria (Serratia marcescens OK482790)

BACKGROUND

A wide variety of microorganisms, including bacteria, live in the rhizosphere zone of plants and have an impact on plant development both favorably and adversely. The beneficial outcome is due to the presence of rhizobacteria that promote plant growth (PGPR).

RESULTS

In this study, a bacterial strain was isolated from lupin rhizosphere and identified genetically as Serratia marcescens (OK482790). Several biochemically and genetically characteristics were confirmed in vitro and in vivo to determine the OK482790 strain ability to be PGPR. The in vitro results revealed production of different lytic enzymes (protease, lipase, cellulase, and catalase), antimicrobial compounds (hydrogen cyanide, and siderophores), ammonia, nitrite, and nitrate and its ability to reduce nitrate to nitrite. In silico and in vitro screening proposed possible denitrification-DNRA-nitrification pathway for OK482790 strain. The genome screening indicated the presence of nitrite and nitrate genes encoding Nar membrane bound sensor proteins (NarK, NarQ and NarX). Nitrate and nitrite reductase encoding genes (NarI, NarJ, NarH, NarG and NapC/NirT) and (NirB, NirC, and NirD) are also found in addition to nitroreductases (NTR) and several oxidoreductases. In vivo results on wheat seedlings confirmed that seedlings growth was significantly improved by soil inoculation of OK482790 strain.

CONCLUSIONS

This study provides evidence for participation of S. marcescens OK482790 in nitrogen cycling via the denitrification-DNRA-nitrification pathway and for its ability to produce several enzymes and compounds that support the beneficial role of plant-microbe interactions to sustain plant growth and development for a safer environment.

Carbon pump dynamics and limited organic carbon burial during OAE1a

Oceanic Anoxic Events (OAEs) are conspicuous intervals in the geologic record that are associated with the deposition of organic carbon (OC)-rich marine sediment, linked to extreme biogeochemical perturbations, and characterized by widespread ocean deoxygenation. Mechanistic links between the marine biological carbon pump (BCP), redox conditions, and organic carbon burial during OAEs, however, remain poorly constrained. In this work we reconstructed the BCP in the western Tethys Ocean across OAE1a (~120 Mya) using sediment geochemistry and OC mass accumulation rates (OC_Acc ). We find that OC_Acc were between 0.006 and 3.3 gC m^-2  yr^-1 , with a mean value of 0.79 ± 0.78 SD gC m^-2  yr^-1 -these rates are low and comparable to oligotrophic regions in the modern oceans. This challenges longstanding assumptions that oceanic anoxic events are intervals of strongly elevated organic carbon burial. Numerical modelling of the BCP, furthermore, reveals that such low OC fluxes are only possible with either or both low to moderate OC export fluxes from ocean surface waters, with rates similar to oligotrophic (nutrient-poor, <30 gC m^-2  yr^-1 ) and mesotrophic (moderate-nutrients, ~50-100 gC m^-2  yr^-1 ) regions in the modern ocean, and stronger than modern vertical OC attenuation. The low OC fluxes thus reflect a relatively weak BCP. Low to moderate productivity is further supported by palaeoecological and geochemical evidence and was likely maintained through nutrient limitation that developed in response to the burial and sequestration of phosphorus in association with iron minerals under ferruginous (anoxic iron-rich) ocean conditions. Without persistently high productivity, ocean deoxygenation during OAE1a was more likely driven by other physicochemical and biological factors including ocean warming, changes in marine primary producer community composition, and fundamental shifts in the efficiency of the BCP with associated effects and feedbacks.

Iron-rich sand promoted nitrate reduction in a study for testing of lignite based new slow-release fertilisers

The N losses and agronomic performances of newly developed slow-releasing fertilisers (SRFs; Epox5 and Poly5) were tested against conventional N fertilisers, urea and diammonium phosphate (DAP), in a climate-controlled lysimeter system. The dry matter (DM) yield and N losses of SRFs were not significantly different from urea and DAP. However, nitrate leaching and nitrous oxide (N₂O) losses were unexpectedly low and therefore, it was inferred that nitrate underwent a chemical transformation. It was observed that a thick fibreglass wick interrupted drainage and created an anaerobic condition in the soil. The subsoil was found to have a high extractable total iron and it was postulated that iron played a role in the observed low level of N losses. An investigation was carried out with a factorial design using sand types and rates of N application as the main factors. Two types of sand; with high and low iron concentration and four levels of N applications; 0 (control), 50, 100 and 200 kg N ha^-1 were employed in a leaching column and nitrate and N₂O losses were measured. The nitrate leaching was significantly (P < 0.05) affected by sand types wherein a lower nitrate level was recorded for high‑iron concentration sand than for low-iron concentration sand at all N application levels. The N₂O emission was significantly (P < 0.05) lower for high-iron sand than for low-iron sand for the 200 N treatment, but not significantly different between sand types for other treatments. These observations provide evidence for the involvement of iron in nitrate transformation under anaerobic conditions and it was hypothesised path was dissimilar nitrate reduction (DNR). Further studies are recommended, to identify the underlying mechanism responsible for nitrate reduction with iron-rich sand.

Microbially mediated Fe-N coupled cycling at different hydrological regimes in riparian wetland

Although the significance of the coupled Fe- and N- cycling processes on biogeochemical transformation in riparian wetlands is well-known, the regulation associated with the changes on the microbiotas during different hydrological regimes remains unclear. This study performed field investigations on the bacterial community compositions (BCC) and specific genera associated to Fe- and N- cycling in the rhizosphere soil and sediments in a riparian wetland in Poyang lake, China. The predominant phyla Proteobacteria, Acidobacteria, and Nitrospirae from all the samples remarkably decreased after long-term continuous flooding, while Actinobacteria, Firmicutes and Bacteroidetes were enriched. For the family level, the relative abundances of iron-oxidizing bacteria (FeOB) Gallionellaceae, and N fixing bacteria Nitrospiraceae and Bradyrhizobiaceae significantly declined upon the long-term flooding and then increased with dewatering, which were consistent with the functional genes sequencing analysis. In which, the Bradyrhizobiaceae (RA 2.0 %-34.6 %) was the dominant nirS denitrifier and potential iron-reducing bacteria (FeRB), Sideroxydans lithotrophicus was one of the dominant FeOB (RA 1.7 %-23 %), which was also identified to be the nirS dentrifier (RA 0.2 %-4.3 %). The absolute quantification of the functional genes levels including nirS, nirK, FeRB (Geobacter spp.) showed their significant increases by 3-7 times upon desiccation compared to that under post-CF. The PCA and RDA results indicated the linkage between redox changes of N and Fe during inundation mediated by FeRB, NOB, and FeOB, which were closely related to hydrochemical indices NO₃^-, Fe²⁺ and SO₄^2-. These evidences all implied the likely occurrence of nitrate reduction coupled to Fe(II) oxidation (NRFeOx) under oligotrophic conditions, which was potentially facilitated by metabolizers consisting of highly correlated Bradyrhizobiaceae and Sideroxydans (rho = 0.86, p < 0.01). These findings provide an interpretation of the biological reactions in the microbially mediated NRFeOx processes driven by hydrological change, which could assist the mechanistic understanding of the global biogeochemical cycles of iron and nitrogen in riparian wetlands.

Archaeal and bacterial ecological strategies in sediment denitrification under the influence of graphene oxide and different temperatures

As an emerging material, graphene oxide (GO) has been widely used in recent years and will inevitably enter into natural water bodies, and it may have an impact on lake microbial communities owing to its potential toxicity and denitrification-enhancing ability. This study simulated the effect of 0.1 g/L GO on denitrification in lake sediments under summer (28 °C) and winter temperatures (8 °C). GO promoted carbon source metabolism and denitrification. Phylogenetic bin-based null model analysis suggested that GO significantly altered the contribution of heterogeneous selection in bacterial and archaeal community assembly. The co-occurrence network indicated that bacterial communities responded to the enhancement of heterogeneous selection by strategies of enhancing positive correlation and shared niche, whereas archaeal communities adopted strategies of enhancing negative correlation and competition. Bacterial networks also emerged with more non-hub connector species that could drive changes in community structure. Our study contributed to the understanding of different ecological strategies adopted by bacterial and archaeal communities in response to changes in ecological selection driven by GO.

Low carbon-to-nitrogen ratio digestate from high-rate anaerobic baffled reactor facilitates heterotrophic/autotrophic nitrifiers involved in nitrogen removal

In this study, baffled anaerobic-aerobic reactors (AOBRs) with modified basalt fiber (MBF) carriers and felt were used to treat domestic wastewater (DWW). The influent was first treated in anaerobic compartments, with the NH₄⁺-N containing digestate refluxed into aerobic compartment for nitrification. The nitrified liquid was channeled to the anaerobic compartments for further denitrification. Under optimal conditions, AOBR with MBF carriers could remove 91% chemical oxygen demand (COD) and 81% total nitrogen (TN), with biomass production increased by 7.6%, 4.5% and 8.7% in three successive anaerobic compartments compared to the control. Biological viability analysis showed that live cells outnumbered dead cells in bio-nests. Metagenomics analysis showed that multiple metabolic pathways accounted for nitrogen conversion in anaerobic and aerobic compartments. More importantly, low COD/TN ratio digestate facilitated heterotrophic nitrification-aerobic denitrification (HN-AD) species growth in aerobic compartment. This study provides a promising strategy to source treatment of DWW from urban communities.

Simultaneous removal of nitrate, tetracycline, and Pb(II) by iron oxidizing strain Zoogloea sp. FY6: Performance and mechanism

Based on the prevalence of combined antibiotics and heavy metals contamination in the aquatic environment, this study utilized a microbial approach to achieve simultaneous removal of nitrate (NO₃^--N), tetracycline (TTC), and Pb(II). Zoogloea sp. FY6 could achieve an optimal NO₃^--N removal efficiency of 91.5% under C/N ratio of 2.0, at a pH of 6.3, and Fe(II) concentration of 20.23 mg L^-1 based on response surface methodology. Additionally, strain FY6 was further found to achieve 89.9 and 81.7% removal of TTC and Pb(II) at 6 h under the optimal conditions. Finally, the results of Fluorescence excitation-emission matrix, X-ray diffraction, Fourier transform infrared spectrometer, and X-ray photoelectron spectroscopy further proved that the biologically formed nanoscale iron oxides and biological action jointly led to the removal of TTC and Pb(II). This study provided a theoretical basis for the application of microbially driven process to remove multi-pollutants in micro-polluted water bodies.

Dissimilatory nitrate reduction in urban lake ecosystems: A comparison study between closed and open lakes in Chengdu, China

Urban lake ecosystems play important roles in nitrogen cycling, yet the occurrence, contribution and mechanism of nitrate reduction in urban closed and open lakes (UCL and UOL) remain unclear. On November - December of 2020, the potential rates of denitrification (DEN), anammox (ANA), and dissimilatory nitrate reduction to ammonium (DNRA) were quantified using slurries incubations in six urban lakes of Chengdu, China. The environmental variables, genes abundance (nirS, hzsB and nrfA), bacterial 16S rRNA gene were also measured. UOL had higher water ammonium (NH4+), nitrate (NO3-) and nitrite (NO2-), and sediment NH4+, NO3-, total organic carbon (TOC) and ferrous iron (Fe2+) content than UCL. The potential rates of DEN and anammox in UOL were 2.16- and 3.45-times more than in UCL, respectively. Conversely, the DNRA rate in UCL was 1.20-fold higher than UOL. Higher nirS and hzsB abundance were found in UOL, while higher nrfA abundance occurred in UCL. High-throughput sequencing analysis showed that the relative abundance of DEN bacteria was higher in UOL (2.59-12.30%) than in UCL (1.96-6.70%) at the genus level, while the relative abundance of DNRA bacteria was higher in UCL (2.02-4.19%) than in UOL (1.14-2.31%). The difference in the relative abundance of anammox bacteria at the genus level was not significant. Multiple linear regression showed that the physicochemical properties and nitrate reduction bacteria together control the potential nitrate reduction rates. Since a higher nitrogen retention capability appears in UCL, according to the nitrogen retention index (NRI), further management should be focused on urban closed lakes to avoid the potential for eutrophication.