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Luo X, Wang A, Huang S, Ji J, Li Z, Huang Q, Chen W. Deciphering the response of nodule bacteriome homeostasis in the bulk soil-rhizosphere-root-nodule ecosystem to soil microplastic pollution. JOURNAL OF HAZARDOUS MATERIALS 2025; 489:137592. [PMID: 39961205 DOI: 10.1016/j.jhazmat.2025.137592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Revised: 12/25/2024] [Accepted: 02/10/2025] [Indexed: 04/16/2025]
Abstract
Microplastic polyethylene (PE) is one of the most widely distributed pollutants in agricultural soils. However, its effects on the assembly and co-occurrence of the coevolved bacteriome of legume plants, especially on nodule bacteriome homeostasis, remain unclear. We analyzed nodule numbers, the difference between leaf δ15N and soil δ15N (Δδ15N), and bacterial communities from nodule, root, rhizosphere, and bulk soil under different microplastic PE treatments. We found that microplastic PE treatments accelerated nodulation, resulting Δδ15N decreased from -2.48 ‰ to -5.06 ‰. The microplastic PE treatments promoted the enrichment of nodule species from the root at an early stage with a source ratio increasing from 0.4 % to 46.6-89.6 %, and reduced selection on the nodule bacteriome with an increase in drift (from 2.8 % to 14.3-36.0 %), probably benefiting the function of Bradyrhizobium in the microbial network whose edges or molecularity increased. In the root, microplastic PE treatments resulted in an increase in homogeneous selection (increase from 29.2 % to 42.8-77.8 %) on the root bacteriome. This study provides new evidence that microplastics can promote nodulation and biological N fixation, revealing a mechanism by which microplastics change nodule bacteriome homeostasis in an Afisol.
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Affiliation(s)
- Xuesong Luo
- National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Achen Wang
- National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Siyun Huang
- Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Jing Ji
- Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Zhijie Li
- National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China
| | - Qiaoyun Huang
- National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Key Laboratory of Soil Environment and Pollution Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Wenli Chen
- National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China.
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2
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Liu J, Duan Y, Song T, Liu Q, Wang P, Hou L, Wang Y, Zhang Y, Zhang J, Li L, de Tender C, Lin Y. Evaluating the environmental impact of polylactic acid plastics in agriculture: Microbial degradation and plant interaction insights. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025; 387:125853. [PMID: 40403663 DOI: 10.1016/j.jenvman.2025.125853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2025] [Revised: 04/24/2025] [Accepted: 05/15/2025] [Indexed: 05/24/2025]
Abstract
In the last decade, non-degradable plastics have been increasingly replaced by biodegradable alternatives like polylactic acid (PLA), particularly in agriculture. However, the feasibility of microbial degradation of PLA plastics in agricultural soils still needs to be confirmed. In addition, it remains unclear whether the degradation process of PLA affects plant growth. Furthermore, the potential comparability of these effects to conventional plastics like polyethylene (PE) requires further investigation. In this study, we first investigated the effects of adding 1 % (w/w) PLA or PE to soil on wheat growth by separately incubating food container membranes and disposable bag membranes in different treatment groups. Whereas PE plastics decreased the germination rate of wheat, even the high concentration of PLA plastics did not affect wheat growth. The composition of the wheat rhizosphere microbiome was however significantly influenced by PLA plastics, with increases in Actinomycetota and Actinomycetes in the presence of PLA disposable food container membranes. To study microbial degradation, secondly, we isolated potential PLA-degrading bacteria from the soil "plastisphere" of two PLA plastics. Based on the weight loss rate and surface morphology of PLA membranes, we detected five efficient PLA-degrading bacteria, including L1 (Pseudomonas aeruginosa), L5 (Streptomyces exfoliatus), P7 (Bacillus zanthoxyli), W1 (Kocuria salina) and W2 (Kocuria assamensis). These bacteria were found to have the ability to degrade PLA membranes in wheat-grown soil, without negatively affecting wheat growth, thereby demonstrating their potential for soil remediation. This study provides a promising microbial solution for reducing PLA pollution in agricultural systems, while maintaining crop productivity.
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Affiliation(s)
- Jiaxi Liu
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yifan Duan
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Tianjiao Song
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Qing Liu
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Peiyuan Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Lijun Hou
- Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, Quebec, H9X 3V9, Canada
| | - Yufan Wang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yiqiong Zhang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Jinyi Zhang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Li Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | | | - Yanbing Lin
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China.
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3
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Cho JH, Yun SD, Kim HW, Seo MJ, Sung BH, Yeom SJ. Screening of a New Kosakonia Species for Polyethylene Biodegradation. J Microbiol Biotechnol 2025; 35:e2411058. [PMID: 40081902 PMCID: PMC11925750 DOI: 10.4014/jmb.2411.11058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2024] [Revised: 01/14/2025] [Accepted: 01/14/2025] [Indexed: 03/16/2025]
Abstract
Polyethylene (PE) is among the most widely used synthetic plastics globally, serving as an essential material in daily life and numerous industries, such as packaging for bottles and food, as well as in the production of toys and pipes. PE is used for various purposes owing to its high durability and low production costs, leading to a steadily increasing demand. However, PE waste is a significant contributor to environmental pollution, posing serious threats to marine and soil ecosystems. Therefore, the efficient decomposition of PE, a synthetic polymer known for its resistance to degradation, using bacteria offers a sustainable and effective method for reusing PE. In this study, we isolated a novel species of Kosakonia, designated Kosakonia cowanii JNU01, from a landfill site, capable of biodegrading PE. K. cowanii JNU01 exhibited the highest cell growth rate in media containing PE, indicating its effectiveness in decomposing PE for use as a sole carbon source in its metabolic pathway. Treatment of PE with K. cowanii JNU01 resulted in the emergence of new chemical functional groups, including hydroxyl, carboxyl, amide, and ether groups, within the inert hydrocarbon structure. Analysis of the PE film treated with K. cowanii JNU01 revealed considerable physical degradation on the film's surface. Additionally, various metabolites released from PE by K. cowanii JNU01 were identified. These findings suggest that K. cowanii JNU01 proves to be an effective candidate bacterium for PE degradation.
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Affiliation(s)
- Jin-Hee Cho
- School of Biological Sciences and Biotechnology, Graduate School, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Seung-Do Yun
- School of Biological Sciences and Biotechnology, Graduate School, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Hyun-Woo Kim
- School of Biological Sciences and Biotechnology, Graduate School, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Min-Ju Seo
- Institute of Synthetic Biology for Carbon Neutralization, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Bong Hyun Sung
- Synthetic Biology Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea
| | - Soo-Jin Yeom
- School of Biological Sciences and Biotechnology, Graduate School, Chonnam National University, Gwangju 61186, Republic of Korea
- Institute of Synthetic Biology for Carbon Neutralization, Chonnam National University, Gwangju 61186, Republic of Korea
- School of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea
- Institute of Systems Biology and Life Science Informatics, Chonnam National University, Gwangju 61186, Republic of Korea
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4
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Qiu G, Han Z, Wang T, Sun Z, Deng B, Wu M, Duan Z, Zhang S, Yang X, Zhu G, Wang Q, Yu H. In-Depth Analysis of Soil Microbial Community Succession Model Construction under Microplastics Stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025; 73:3363-3372. [PMID: 39878456 DOI: 10.1021/acs.jafc.4c09059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2025]
Abstract
Although microplastics (MPs) toxicity to soil microorganisms has been preliminarily explored, the underlying reasons affecting the direction of microbial community succession are unclear. This study aimed to investigate the impacts of MPs infer community assembly mechanisms through phylogenetic bin-based null model analysis, network models, and protein function prediction in five typical Northeast China five typical soils. The results show that microbial communities in soils with high organic matter exhibit a stronger response to MPs, with enhanced protein functionality, network regulation, and assembly processes. The presence of MPs increased the drift process in the soil microbial community assembly by 2%, a deterministic process influenced by MPs, and enhanced the complexity and stability of the community assembly. Overall, MPs altered microbial protein function and regulatory networks by affecting diversity and community assembly processes, leading to shifts in microbial community succession. This study provided a theoretical basis for further study of the ecotoxicological effects of MPs in soil.
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Affiliation(s)
- Guankai Qiu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhongmin Han
- College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Tianye Wang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Zhenghao Sun
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Boling Deng
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Meixuan Wu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhongxu Duan
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shaoqing Zhang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Xiutao Yang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Guopeng Zhu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Quanying Wang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Hongwen Yu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
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Mendoza JE, Tineo D, Chuquibala-Checan B, Atalaya-Marin N, Taboada-Mitma VH, Tafur-Culqui J, Tarrillo E, Gómez-Fernández D, Goñas M, Reyes-Reyes MA. Global perspectives on the biodegradation of LDPE in agricultural systems. Front Microbiol 2025; 15:1510817. [PMID: 39839104 PMCID: PMC11748793 DOI: 10.3389/fmicb.2024.1510817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Accepted: 12/19/2024] [Indexed: 01/23/2025] Open
Abstract
The increasing use of plastics globally has generated serious environmental and human health problems, particularly in the agricultural sector where low-density polyethylene (LDPE) and other plastics are widely used. Due to its low recycling rate and slow degradation process, LDPE is a major source of pollution. This paper addresses the problem of plastic accumulation in agriculture, focusing on LDPE biodegradation strategies. The studies reviewed include recent data and the methodologies used include state-of-the-art technologies and others that have been used for decades, to monitor and measure the degree of biodegradation that each treatment applied can have, including SEM, GCMS, HPLC, and microscopy. The countries investigating these biodegradation methodologies are identified, and while some countries have been developing them for some years, others have only begun to address this problem in recent years. The use of microorganisms such as bacteria, fungi, algae, and insect larvae that influence its decomposition is highlighted. A workflow is proposed to carry out this type of research. Despite the advances, challenges remain, such as optimizing environmental conditions to accelerate the process and the need for further research that delves into microbial interactions in various environmental contexts.
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Affiliation(s)
- Jani E. Mendoza
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Daniel Tineo
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Beimer Chuquibala-Checan
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Nilton Atalaya-Marin
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Victor H. Taboada-Mitma
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Josué Tafur-Culqui
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Ever Tarrillo
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Darwin Gómez-Fernández
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - Malluri Goñas
- Centro Experimental Yanayacu, Dirección de Supervisión y Monitoreo en las Estaciones Experimentales Agrarias (DSME), Instituto Nacional de Innovación Agraria (INIA), Lima, Peru
| | - María Andrea Reyes-Reyes
- Corporación para la Investigación de la Corrosión (CIC), Piedecuesta, Colombia
- Grupo de Investigación en Compuestos Orgánicos de Interés Medicinal (CODEIM), Universidad Industrial de Santander (UIS), Bucaramanga, Colombia
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6
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Bai X, Li K, Xu L, Zhang G, Zhang M, Huang Y. Direct evidence for selective microbial enrichment with plastic degradation potential in the plastisphere. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 954:176576. [PMID: 39343400 DOI: 10.1016/j.scitotenv.2024.176576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 09/11/2024] [Accepted: 09/26/2024] [Indexed: 10/01/2024]
Abstract
Plastisphere, characterized by microbial colonization on plastic debris, has attracted concern with its adverse environmental effects. The microbial features have been increasingly investigated; however, there lacks direct evidence for microplastics serving as carbon sources and enriching plastic-degrading microorganisms. Here, we obtained microbial communities from soil microplastics, analyzed the dissimilarity compared with soil, and characterized the plastic-degrading potential of isolates from plastisphere. Results showed the plastisphere communities significantly differed from soil communities and exhibited a higher relative abundance of Nocardia and Rhodococcus. To verify the selective enrichment of plastic-degrading microorganisms in the plastisphere, culture-based strategies were employed to evaluate the polyethylene (PE) degradation potential of two isolates Nocardia asteroides No.11 and Rhodococcus hoagii No.17. They could grow solely on PE and led to significant weight loss. FTIR and SEM analysis revealed the formation of new functional groups and the destruction of structural integrity on PE surfaces. Genes related to PE biodegradation were identified by genome-wide sequencing thus recognizing relevant enzymes and elucidating potential pathways. Overall, this report combined culture-free and culture-based approaches to confirm the plastic degradation potential of selectively enriched microorganisms in soil plastisphere, providing a positive perspective toward promoting microplastic biodegradation in farmland soil by enhancing natural microbial processes.
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Affiliation(s)
- Xinyi Bai
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Kang Li
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Libo Xu
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Guangbao Zhang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Mengjun Zhang
- Peking University Shenzhen Institute, Shenzhen, Guangdong 518057, China; PKU-HKUST Shenzhen-Hongkong Institution, Shenzhen, Guangdong 518057, China.
| | - Yi Huang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; Peking University Shenzhen Institute, Shenzhen, Guangdong 518057, China.
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7
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Muangchinda C, Pinyakong O. Enrichment of LDPE-degrading bacterial consortia: Community succession and enhanced degradation efficiency through various pretreatment methods. Sci Rep 2024; 14:28795. [PMID: 39567658 PMCID: PMC11579475 DOI: 10.1038/s41598-024-80306-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 11/18/2024] [Indexed: 11/22/2024] Open
Abstract
Low-density polyethylene (LDPE) is a widely used plastic that significantly contributes to environmental pollution, and its biodegradation remains challenging. This study investigates the dynamics of bacterial communities in consortia enriched with LDPE as the sole carbon source. The potential for microbial diversity to adapt to polluted environments underscores its role in bioremediation. Community analysis identified Actinobacteria and Proteobacteria as key contributors to LDPE degradation, with dominant genera including Mycobacterium, Cupriavidus, Gordonia, Ochrobactrum, Nocardia, Agromyces, Amycolatopsis, and Cellulosimicrobium. The biodegradation of untreated and pretreated LDPE films was also examined, revealing that UV pretreatment significantly enhances degradation, with weight losses of 2.22-5.17% after 120 days. In contrast, sunlight and thermal treatments resulted in lower weight losses of 1.67-4.56% and 1.42-3.22%, respectively, while untreated LDPE showed only 1.32-2.80% weight loss. These findings underscore the importance of UV pretreatment in facilitating plastic biodegradation. Furthermore, potential LDPE-degrading Actinobacteria and Proteobacteria were isolated, identified as key players in the communities and co-occurrence networks, suggesting promising candidates for developing sustainable plastic waste management solutions. Moreover, this study is the first to reveal the potential LDPE degradation abilities of several genera, including Mesorhizobium, Agromyces, Amycolatopsis, Olivibacter, Aquamicrobium, Pseudaminobacter, and others.
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Affiliation(s)
- Chanokporn Muangchinda
- International Postgraduate Programs in Hazardous Substance and Environmental Management, Graduate School, Chulalongkorn University, Bangkok, 10330, Thailand
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Onruthai Pinyakong
- Center of Excellence in Microbial Technology for Marine Pollution Treatment (MiTMaPT), Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
- Research Program on Remediation Technologies for Petroleum Contamination, Center of Excellence on Hazardous Substance Management (HSM), Bangkok, 10330, Thailand.
- Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
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8
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Liu J, Han S, Wang P, Zhang X, Zhang J, Hou L, Zhang Y, Wang Y, Li L, Lin Y. Soil microorganisms play an important role in the detrimental impact of biodegradable microplastics on plants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:172933. [PMID: 38703855 DOI: 10.1016/j.scitotenv.2024.172933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 04/05/2024] [Accepted: 04/30/2024] [Indexed: 05/06/2024]
Abstract
Biodegradable plastics were developed to mitigate environmental pollution caused by conventional plastics. Research indicates that biodegradable microplastics still have effects on plants and microorganisms as their non-biodegradable counterparts, yet the effects on vegetable crops are not well-documented. Additionally, the function of soil microorganisms affected by biodegradable microplastics on the fate of microplastics remains unverified. In this study, Brassica chinensis was cultivated in soil previously incubated for one year with low-density polyethylene (LDPE-MPs) and poly (butylene adipate-co-terephthalate) microplastics (PBAT-MPs) at 0.05 % and 2 % concentrations. High concentrations of PBAT-MPs significantly reduced the biomass to 5.83 % of the control. The abundance of Methyloversatilis, IS-44, and UTCFX1 in the rhizosphere bacterial community increased significantly in the presence of PBAT-MPs. Moreover, these microplastics significantly enhanced soil enzyme activity. Incubation tests were performed with three PBAT plastic sheets to assess the function of the altered bacterial community in the soil of control (Control-soil) and soil treated with high concentrations of PBAT-MPs (PBAT-MPs-soil). Scanning Electron Microscopy and Atomic Transfer Microscopy (SEM/ATM) results confirmed enhanced PBAT degradation in the PBAT-MPs-soil. PICRUST2 analysis revealed that pathways related to substance degradation were upregulated in the PBAT-MPs-soil. Furthermore, a higher percentage of strains with PBAT-MPs-degrading ability was found in PBAT-MPs-soil. Our results confirm that PBAT-MPs significantly inhibit the growth of vegetable crops and that soil bacterial communities affected by PBAT-MPs are instrumental in degrading them.
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Affiliation(s)
- Jiaxi Liu
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Siqi Han
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Peiyuan Wang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiaofeng Zhang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jiuyu Zhang
- Institute of Metabolism & Integrative Biology, Fudan University, Shanghai 200438, China
| | - Lijun Hou
- Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, Quebec H9X 3V9, Canada
| | - Yiqiong Zhang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yufan Wang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Li Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Yanbing Lin
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.
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9
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Tian H, Zheng C, Huang X, Qi C, Li B, Du Z, Zhu L, Wang J, Wang J. Effects of farmland residual mulch film-derived microplastics on the structure and function of soil and earthworm Metaphire guillelmi gut microbiota. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 915:170094. [PMID: 38224880 DOI: 10.1016/j.scitotenv.2024.170094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 01/07/2024] [Accepted: 01/09/2024] [Indexed: 01/17/2024]
Abstract
Microplastics derived from polyethylene (PE) mulch films are widely found in farmland soils and present considerable potential threats to agricultural soil ecosystems. However, the influence of microplastics derived from PE mulch films, especially those derived from farmland residual PE mulch films, on soil ecosystems remains unclear. In this study, we analyzed the bacterial communities attached to farmland residual transparent PE mulch film (FRMF) collected from peanut fields and the different ecological effects of unused PE mulch film-derived microplastics (MPs) and FRMF-derived microplastics (MPs-aged) on the soil and earthworm Metaphire guillelmi gut microbiota, functional traits, and co-occurrence patterns. The results showed that the assembly and functional patterns of the bacterial communities attached to the FRMF were clearly distinct from those in the surrounding farmland soil, and the FRMF enriched some potential plastic-degrading and pathogenic bacteria, such as Nocardioidaceae, Clostridiaceae, Micrococcaceae, and Mycobacteriaceae. MPs substantially influenced the assembly and functional traits of soil bacterial communities; however, they only significantly changed the functional traits of earthworm gut bacterial communities. MPs-aged considerably affected the assembly and functional traits of both soil and earthworm gut bacterial communities. Notably, MPs had a more remarkable effect on nitrogen-related functions than the MPs-aged in numbers for both soil and earthworm gut samples. Co-occurrence network analysis revealed that both MPs and MPs-aged enhanced the synergistic interactions among operational taxonomic units (OTUs) of the composition networks for all samples. For community functional networks, MPs and MPs-aged enhanced the antagonistic interactions for soil samples; however, they exhibited contrasting effects for earthworm gut samples, as MPs enhanced the synergistic interactions among the functional contents. These findings broaden and deepen our understanding of the effects of FRMF-derived microplastics on soil ecosystems, suggesting that the harmful effects of aged plastics on the ecological environment should be considered.
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Affiliation(s)
- Huimei Tian
- College of Forestry, Shandong Agricultural University, Taian 271018, China.
| | - Chuanwei Zheng
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China
| | - Xinjie Huang
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China
| | - Chen Qi
- College of Forestry, Shandong Agricultural University, Taian 271018, China
| | - Bing Li
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China.
| | - Zhongkun Du
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China.
| | - Lusheng Zhu
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China.
| | - Jinhua Wang
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China.
| | - Jun Wang
- College of Resources and Environment, Shandong Agricultural University, Key Laboratory of Agricultural Environment in Universities of Shandong, Taian 271018, China.
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10
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Li Z, Feng C, Lei J, He X, Wang Q, Zhao Y, Qian Y, Zhan X, Shen Z. Farmland Microhabitat Mediated by a Residual Microplastic Film: Microbial Communities and Function. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:3654-3664. [PMID: 38318812 DOI: 10.1021/acs.est.3c07717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
How the plastisphere mediated by the residual microplastic film in farmlands affects microhabitat systems is unclear. Here, microbial structure, assembly, and biogeochemical cycling in the plastisphere and soil in 33 typical farmland sites were analyzed by amplicon sequencing of 16S rRNA genes and ITS and metagenome analysis. The results indicated that residual microplastic film was colonized by microbes, forming a unique niche called the plastisphere. Notable differences in the microbial community structure and function were observed between soil and plastisphere. Residual microplastic film altered the microbial symbiosis and assembly processes. Stochastic processes significantly dominated the assembly of the bacterial community in the plastisphere and soil but only in the plastisphere for the fungal community. Deterministic processes significantly dominated the assembly of fungal communities only in soil. Moreover, the plastisphere mediated by the residual microplastic film acted as a preferred vector for pathogens and microorganisms associated with plastic degradation and the nitrogen and sulfur cycle. The abundance of genes associated with denitrification and sulfate reduction activity in the plastisphere was pronouncedly higher than that of soil, which increase the potential risk of nitrogen and sulfur loss. The results will offer a scientific understanding of the harm caused by the residual microplastic film in farmlands.
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Affiliation(s)
- Zhenling Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
- The Key Laboratory of Poyang Lake Wetland and Watershed Research, Ministry of Education, School of Geography and Environment, Jiangxi Normal University, Nanchang 330022, P. R. China
| | - Chenghong Feng
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
| | - Jinming Lei
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
| | - Xiaokang He
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
| | - Qixuan Wang
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
| | - Yue Zhao
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
| | - Yibin Qian
- National Plot Zone for Ecological Conservation (Hainan) Research Center, Hainan Research Academy of Environmental Sciences, Haikou 571127, P. R. China
| | - Xinmin Zhan
- Civil Engineering, University of Galway, Galway H91 TK33, Ireland
| | - Zhenyao Shen
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
- The Key Laboratory of Water and Sediment Sciences, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, P. R. China
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11
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Wei M, Zhang Y, Wang Y, Liu X, Li X, Zheng X. Employing Atomic Force Microscopy (AFM) for Microscale Investigation of Interfaces and Interactions in Membrane Fouling Processes: New Perspectives and Prospects. MEMBRANES 2024; 14:35. [PMID: 38392662 PMCID: PMC10890076 DOI: 10.3390/membranes14020035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 01/22/2024] [Accepted: 01/25/2024] [Indexed: 02/24/2024]
Abstract
Membrane fouling presents a significant challenge in the treatment of wastewater. Several detection methods have been used to interpret membrane fouling processes. Compared with other analysis and detection methods, atomic force microscopy (AFM) is widely used because of its advantages in liquid-phase in situ 3D imaging, ability to measure interactive forces, and mild testing conditions. Although AFM has been widely used in the study of membrane fouling, the current literature has not fully explored its potential. This review aims to uncover and provide a new perspective on the application of AFM technology in future studies on membrane fouling. Initially, a rigorous review was conducted on the morphology, roughness, and interaction forces of AFM in situ characterization of membranes and foulants. Then, the application of AFM in the process of changing membrane fouling factors was reviewed based on its in situ measurement capability, and it was found that changes in ionic conditions, pH, voltage, and even time can cause changes in membrane fouling morphology and forces. Existing membrane fouling models are then discussed, and the role of AFM in predicting and testing these models is presented. Finally, the potential of the improved AFM techniques to be applied in the field of membrane fouling has been underestimated. In this paper, we have fully elucidated the potentials of the improved AFM techniques to be applied in the process of membrane fouling, and we have presented the current challenges and the directions for the future development in an attempt to provide new insights into this field.
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Affiliation(s)
- Mohan Wei
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Yaozhong Zhang
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Yifan Wang
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Xiaoping Liu
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
- Yulin Coal Chemical Waste Resource Utilization and Low Carbon Environmental Protection Engineering Technology Research Center, Yulin High-tech Zone Yuheng No. 1 Industrial Sewage Treatment Co., Ltd., Yulin 719000, China
| | - Xiaoliang Li
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
| | - Xing Zheng
- State Key Laboratory of Eco-hydraulics in North West Arid Region, Xi'an University of Technology, Xi'an 710048, China
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12
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He Y, Deng X, Jiang L, Hao L, Shi Y, Lyu M, Zhang L, Wang S. Current advances, challenges and strategies for enhancing the biodegradation of plastic waste. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167850. [PMID: 37844647 DOI: 10.1016/j.scitotenv.2023.167850] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 10/13/2023] [Accepted: 10/13/2023] [Indexed: 10/18/2023]
Abstract
Due to its highly recalcitrant nature, the growing accumulation of plastic waste is becoming an urgent global problem. Biodegradation is one of the best possible approaches for the treatment of plastic waste in an environmentally friendly manner, but our current knowledge on the underlying mechanisms, as well as strategies for the development and enhancement of plastic biodegradation are still limited. This review aims to provide an updated and comprehensive overview of current research on plastic waste biodegradation, focusing on enhancement strategies with ongoing research significance, including the mining of highly efficient plastic-degrading microorganisms/enzymes, utilization of synergistic additives, novel pretreatment approaches, modification via molecular engineering, and construction of bacterial/enzyme consortia systems. Studying these strategies can (i) enrich the high-performance microbial/enzymes toolbox for plastic degradation, (ii) provide methods for recycling and upgrading plastics, as well as (iii) enable further molecular modification and functional optimization of plastic-degrading enzymes to realize economically viable biodegradation of plastics. To the best of our knowledge, this is the first review to discuss in detail strategies to enhance biodegradation of plastics. Finally, some recommendations for future research on plastic biodegradation are listed, hoping to provide the best direction for tackling the plastic waste dilemma in the future.
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Affiliation(s)
- Yuehui He
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Xilong Deng
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lei Jiang
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lijuan Hao
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Yong Shi
- College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Mingsheng Lyu
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China
| | - Lei Zhang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China.
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine, Biotechnology, Jiangsu Ocean University, Lianyungang 222005, China; Co-Innovation Center of Jiangsu Marine Bio-Industry Technology, Jiangsu Ocean University, Lianyungang 222005, China; College of Marine Food and Bioengineering, Jiangsu Ocean University, Lianyungang 222005, China.
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13
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Zhao Z, Wu H, Jin T, Liu H, Men J, Cai G, Cernava T, Duan G, Jin D. Biodegradable mulch films significantly affected rhizosphere microbial communities and increased peanut yield. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 871:162034. [PMID: 36754316 DOI: 10.1016/j.scitotenv.2023.162034] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/30/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
Biodegradable mulch films are widely used to replace conventional plastic films in agricultural fields. However, their ecological effects on different microbial communities that naturally inhabit agricultural fields are scarcely explored. Herein, differences in bacterial communities recovered from biofilms, bulk soil, and rhizosphere soil were comparatively assessed for polyethylene film (PE) and biodegradable mulch film (BDM) application in peanut planted fields. The results showed that the plastic film type significantly influenced the bacterial community in different ecological niches of agricultural fields (P < 0.001). Specifically, BDMs significantly increased the diversity and abundance of bacteria in the rhizosphere soil. The bacterial communities in each ecological niche were distinguishable from each other; bacterial communities in the rhizosphere soil showed the most pronounced response among different treatments. Acidobacteria and Pseudomonas were significantly enriched in the rhizosphere soil when BDMs were used. BDMs also increased the rhizosphere soil bacterial network complexity and stability. The enrichment of beneficial bacteria in the rhizosphere soil under BDMs may also have implications for the observed increase in peanut yield. Deepening analyses indicated that Pseudoxanthomonas and Glutamicibacter are biomarkers in biofilms of PE and BDMs respectively. Our study provides new insights into the consequences of the application of different types of plastic films on microbial communities in different ecological niches of agricultural fields.
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Affiliation(s)
- Zhirui Zhao
- Hebei Province Key Laboratory of Sustained Utilization and Development of Water Recourse, School of Water Resources and Environment, Hebei GEO University, Shijiazhuang 050031, China
| | - Haimiao Wu
- Hebei Province Key Laboratory of Sustained Utilization and Development of Water Recourse, School of Water Resources and Environment, Hebei GEO University, Shijiazhuang 050031, China; Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Tuo Jin
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China; Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing 100125, China
| | - Huiying Liu
- Liaoning Academy of Agricultural Sciences, Shenyang 110161, China
| | - Jianan Men
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Guangxing Cai
- Liaoning Academy of Agricultural Sciences, Shenyang 110161, China
| | - Tomislav Cernava
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010 Graz, Austria
| | - Guilan Duan
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Decai Jin
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
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14
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Polyethylene-biodegrading Microbes and Their Future Directions. BIOTECHNOL BIOPROC E 2023. [DOI: 10.1007/s12257-022-0264-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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15
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Nguyen NHA, Marlita M, El-Temsah YS, Hrabak P, Riha J, Sevcu A. Early stage biofilm formation on bio-based microplastics in a freshwater reservoir. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159569. [PMID: 36272481 DOI: 10.1016/j.scitotenv.2022.159569] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/14/2022] [Accepted: 10/15/2022] [Indexed: 06/16/2023]
Abstract
Bio-based plastics (BP) produced from renewable biomass resources, such as high-density polyethylene (HDPE), polylactic acid (PLA) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), is currently increasing in terms of both products and applications. However, their biodegradability and environmental fate are not yet fully understood, especially in freshwaters. Here, we present the results of an in-situ study in a freshwater reservoir, where we submerged HDPE, PLA and PHBV microscale BP (mBP) in dialysis bags to enable exchange of small organic and inorganic molecules, including nutrients, with the surrounding water. After one and two months, the bacterial biofilm that formed on each mBP was characterised by 16S rRNA amplicon sequencing. After two-months, Oxalobacteraceae, Pedosphaeraceae, Flavobacteriaceae (Flavobacterium) and Chitinophagaceae (Ferruginibacter) had increased by up to four times. Both these and other common members (≥1 % relative total biomass) of the microbial community were similarly abundant on all mBP. Low-abundance (0.3-1 %) bacterial taxa, however, were significantly more diverse and differed on each mBP. Notably, some low-abundance families and genera increased on specific materials, e.g. Sphingomonadaceae on HDPE, Sphingobacteriaceae on PHBV, Gemmatimonas and Crenothrix on PLA. Overall, abundant bacteria were regarded as a pioneering community, while low-abundance bacteria were more diverse and preferred mBP types in the early stages of biofilm formation on mBP. It could be influenced by the environmental conditions, where nutrient levels and low temperatures might shape the low-abundance of attached bacterial communities than the plastic material itself.
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Affiliation(s)
- Nhung H A Nguyen
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic.
| | - Marlita Marlita
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Yehia S El-Temsah
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Centre for Biosafety, Postboks 6418, 9294 Tromsø, Norway
| | - Pavel Hrabak
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Jakub Riha
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Alena Sevcu
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic.
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16
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Zhang C, Mu Y, Li T, Jin FJ, Jin CZ, Oh HM, Lee HG, Jin L. Assembly strategies for polyethylene-degrading microbial consortia based on the combination of omics tools and the "Plastisphere". Front Microbiol 2023; 14:1181967. [PMID: 37138608 PMCID: PMC10150012 DOI: 10.3389/fmicb.2023.1181967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 03/31/2023] [Indexed: 05/05/2023] Open
Abstract
Numerous microorganisms and other invertebrates that are able to degrade polyethylene (PE) have been reported. However, studies on PE biodegradation are still limited due to its extreme stability and the lack of explicit insights into the mechanisms and efficient enzymes involved in its metabolism by microorganisms. In this review, current studies of PE biodegradation, including the fundamental stages, important microorganisms and enzymes, and functional microbial consortia, were examined. Considering the bottlenecks in the construction of PE-degrading consortia, a combination of top-down and bottom-up approaches is proposed to identify the mechanisms and metabolites of PE degradation, related enzymes, and efficient synthetic microbial consortia. In addition, the exploration of the plastisphere based on omics tools is proposed as a future principal research direction for the construction of synthetic microbial consortia for PE degradation. Combining chemical and biological upcycling processes for PE waste could be widely applied in various fields to promote a sustainable environment.
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Affiliation(s)
- Chengxiao Zhang
- College of Biology and the Environment, Co-Innovation Centre for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
| | - Yulin Mu
- College of Biology and the Environment, Co-Innovation Centre for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
| | - Taihua Li
- College of Biology and the Environment, Co-Innovation Centre for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
| | - Feng-Jie Jin
- College of Biology and the Environment, Co-Innovation Centre for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
| | - Chun-Zhi Jin
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, Daejeon, Republic of Korea
| | - Hee-Mock Oh
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, Daejeon, Republic of Korea
| | - Hyung-Gwan Lee
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, Daejeon, Republic of Korea
- Hyung-Gwan Lee,
| | - Long Jin
- College of Biology and the Environment, Co-Innovation Centre for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- *Correspondence: Long Jin,
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17
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Chung JH, Yeon J, Seong HJ, An SH, Kim DY, Yoon Y, Weon HY, Kim JJ, Ahn JH. Distinct Bacterial and Fungal Communities Colonizing Waste Plastic Films Buried for More Than 20 Years in Four Landfill Sites in Korea. J Microbiol Biotechnol 2022; 32:1561-1572. [PMID: 36453077 PMCID: PMC9843814 DOI: 10.4014/jmb.2206.06021] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 11/07/2022] [Accepted: 11/10/2022] [Indexed: 12/02/2022]
Abstract
Plastic pollution has been recognized as a serious environmental problem, and microbial degradation of plastics is a potential, environmentally friendly solution to this. Here, we analyzed and compared microbial communities on waste plastic films (WPFs) buried for long periods at four landfill sites with those in nearby soils to identify microbes with the potential to degrade plastics. Fourier-transform infrared spectroscopy spectra of these WPFs showed that most were polyethylene and had signs of oxidation, such as carbon-carbon double bonds, carbon-oxygen single bonds, or hydrogen-oxygen single bonds, but the presence of carbonyl groups was rare. The species richness and diversity of the bacterial and fungal communities on the films were generally lower than those in nearby soils. Principal coordinate analysis of the bacterial and fungal communities showed that their overall structures were determined by their geographical locations; however, the microbial communities on the films were generally different from those in the soils. For the pulled data from the four landfill sites, the relative abundances of Bradyrhizobiaceae, Pseudarthrobacter, Myxococcales, Sphingomonas, and Spartobacteria were higher on films than in soils at the bacterial genus level. At the species level, operational taxonomic units classified as Bradyrhizobiaceae and Pseudarthrobacter in bacteria and Mortierella in fungi were enriched on the films. PICRUSt analysis showed that the predicted functions related to amino acid and carbohydrate metabolism and xenobiotic degradation were more abundant on films than in soils. These results suggest that specific microbial groups were enriched on the WPFs and may be involved in plastic degradation.
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Affiliation(s)
- Joon-hui Chung
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | - Jehyeong Yeon
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | | | - Si-Hyun An
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | - Da-Yeon Kim
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | - Younggun Yoon
- College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan 54596, Republic of Korea
| | - Hang-Yeon Weon
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | - Jeong Jun Kim
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea
| | - Jae-Hyung Ahn
- Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju-gun, Jeollabuk-do 55365, Republic of Korea,Corresponding author Phone: +82-63-238-3045 Fax: +82-63-850-3835 E-mail:
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18
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Zhou Q, Tu C, Liu Y, Li Y, Zhang H, Vogts A, Plewe S, Pan X, Luo Y, Waniek JJ. Biofilm enhances the copper (II) adsorption on microplastic surfaces in coastal seawater: Simultaneous evidence from visualization and quantification. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 853:158217. [PMID: 36028022 DOI: 10.1016/j.scitotenv.2022.158217] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 07/29/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
Microplastics (MPs) exposed to the urban coastal seawater could form biofilms, which facilitate the adsorption and transportation of hazardous contaminants. However, influence of biofilms on the metal adsorption of MPs, especially the co-existence of biofilm and metals on MPs, is still less known. In this study, the adsorption of copper (Cu) on biofilm-coated MPs (BMPs) was visually analyzed and quantified. The results of scanning electron microscopy in combination with energy dispersive X-ray showed that biofilm and metals co-occurred on MPs in seawater. The nanoscale secondary ion mass spectrometry images further exhibited that the distribution of Cu, chlorine (Cl) and biofilm on MP surfaces was highly consistent. Moreover, the adsorption of Cu(II) on BMPs was enhanced as quantified by inductively coupled plasma-mass spectrometer. Furthermore, different species on BMPs with and without Cu were identified, and their potential functions of metal or Cl metabolism were predicted based on KEGG pathway database. Overall, for the first time, this study provides visual and quantified evidences for the enhancement of Cu(II) adsorption on BMPs based on co-localization, and it may shed a light on the development of methodologies for investigating the interaction among MPs, biofilms and pollutants in marine environment.
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Affiliation(s)
- Qian Zhou
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou 310014, China; Leibniz Institute for Baltic Sea Research, Rostock 18119, Germany; CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Chen Tu
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; Leibniz Institute for Baltic Sea Research, Rostock 18119, Germany; CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China.
| | - Ying Liu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Yuan Li
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Haibo Zhang
- Zhejiang Province Key Laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Angela Vogts
- Leibniz Institute for Baltic Sea Research, Rostock 18119, Germany
| | - Sascha Plewe
- Leibniz Institute for Baltic Sea Research, Rostock 18119, Germany
| | - Xiangliang Pan
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province, College of Environment, Zhejiang University of Technology, Hangzhou 310014, China
| | - Yongming Luo
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, China
| | - Joanna J Waniek
- Leibniz Institute for Baltic Sea Research, Rostock 18119, Germany
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Gao X, Fu C, Li M, Qi X, Jia X. Effects of Biodegradation of Corn-Starch-Sodium-Alginate-Based Liquid Mulch Film on Soil Microbial Functions. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19148631. [PMID: 35886488 PMCID: PMC9317586 DOI: 10.3390/ijerph19148631] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 07/13/2022] [Accepted: 07/13/2022] [Indexed: 12/10/2022]
Abstract
In response to the problems of the poor degradability and mechanical properties of liquid mulch, natural non-toxic polymer compound corn starch and sodium alginate were used to prepare fully biodegradable liquid mulch. The preparation conditions of the mulch were optimized, and the mechanical properties of the mulch and the changes in the microbial community in soil with the mulch degradation were analyzed. The corn-starch–sodium-alginate-based liquid mulch film had an optimum performance at a tensile strength of 0.145 MPa and an elongation at a break of 16.05%, which was attained by adding 33.33% sodium alginate, 50% glycerol 22 and 4% citric acid to corn starch after moist heat modification. Fourier transform infrared spectroscopy analysis showed that the -COOH in sodium alginate could interact with the -OH in starch and glycerol through hydrogen bonding, thus, resulting in a denser structure and better mechanical properties of the liquid mulch as a non-crystalline material. The soil burial degradation study of mulch revealed that corn-starch–sodium-alginate-based liquid mulch degraded completely at 25 days macroscopically, and mulch degradation increased soil organic matter content. Microbial kinetic analysis showed that the abundance and diversity of the bacterial community decreased with the degradation of the mulch, which was conducive to the optimization of the bacterial community structure and function. Arthrobacter of the class Actinomycetes became the dominant microorganism, and its abundance increased by 16.48-times at 14 days of mulch degradation compared with that before degradation, and Acidophilus phylum (14 days) decreased by 99.33%. The abundance of fungal communities was elevated in relation to the main functional microorganisms involved in liquid mulch degradation, with Alternaria and Cladosporium of the Ascomycete phylum Zygomycetes being the most active at the early stage of mulch degradation (7 days), and the relative abundance of Blastocystis was significantly elevated at the late stage of mulch degradation (14 days), which increased by 13.32%. This study provides important support for the green and sustainable development of modern agriculture.
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Affiliation(s)
- Xia Gao
- State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; (X.G.); (C.F.)
- Key Laboratory of Cleaner Production, Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China
| | - Chenxing Fu
- State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; (X.G.); (C.F.)
- Key Laboratory of Cleaner Production, Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China
| | - Mingxiao Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; (M.L.); (X.Q.)
| | - Xuejiao Qi
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; (M.L.); (X.Q.)
| | - Xuan Jia
- State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; (X.G.); (C.F.)
- Key Laboratory of Cleaner Production, Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China
- Correspondence:
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