Forest swamp succession alters organic carbon composition and survival strategies of soil microbial communities

Exploring the function of key species in different composting stages for effective waste biotransformation

Composting is a microbial-driven process that plays a vital role in recycling waste and promoting sustainable production. To develop more effective bioaugmentation strategies, this study examined three successive stages in an aerobic composting system, focusing on microbial community adaptation to high-temperature stress (mode_2) and nutrient-poor conditions (mode_3). The results revealed a shift from an r-strategy (rapid growth) to a K-strategy (thriving under resource-limited conditions). Community succession was predominantly driven by deterministic processes (>90 %) and exhibited strong cooperative interactions. Using multiple statistical approaches, key species were identified for each condition. These species enhanced microbial network connectivity under environmental stresses, increasing network edges by 29 %-35 %. Under high-temperature stress, Bacillus and Ureibacillus maintained core functions, while Chelativorans and Aeribacillus contributed to key metabolic pathways, including amino acid metabolism. In nutrient-poor conditions, Saccharomonospora and Pseudoxanthomonas enhanced overall system functionality, and Novibacillus played a key role in carbon and nitrogen cycling, particularly nitrogen fixation. Predictive models for microbial community stability (R2 = 0.68-0.97) were developed based on these key species to enable rapid assessment of system stability. Overall, this study identifies essential microbes involved in composting across different environmental conditions and clarifies their functional roles, providing valuable insights for optimizing aerobic composting efficiency and advancing waste resource management.

Study of microbial communities, sensory characteristics, volatile flavor compounds and the correlation during the storage of Xiangyang fresh Huangjiu

Xiangyang fresh Huangjiu is a Chinese regional specialty fermented beverage and an intangible cultural heritage. The microbial community, sensory characteristics and volatile flavor compounds during the storage of two typs of Xiangyang fresh Huangjiu were investigated, and a correlative analysis was conducted between the microbial community and sensory characteristics as well as volatile flavor compounds. 14 dominant bacterial genera and 7 dominant fungal genera were indentified in both types of Huangjiu. The pronounced sourness in both types of Huangjiu during storage was strongly positively associated with Saccharomyces. The predominant flavor profile of 1-octen-3-one was significantly negatively correlated with Gluconobacterium, and the increase of Wickerhamomyces and Millerozyma, along with the decline of Enterobacter, Komagataeibacter, Pseudomonas, and Saccharomycopsis, contributed to the reduction of the pungent volatile compounds of dimethyl trisulfide and 2-methyl butanal. The results offer insights for quality enhancement, storage and consumption in the standardized industrial production of Xiangyang fresh Huangjiu.

Shifts in fungal communities drive soil profile nutrient cycling during grassland restoration

Soil microbial diversity and community life strategies are crucial for nutrient cycling during vegetation restoration. Although the changes in topsoil microbial communities during restoration have been extensively studied, the structure, life strategies, and function of microbial communities in the subsoil remain poorly understood, especially regarding their role in nutrient cycling during vegetation restoration. In this study, we conducted a comprehensive investigation of the changes in the soil microbial community, assembly process, life strategies, and nutrient cycling functional genes in soil profiles (0-100 cm) across a 36 year chronosequence (5, 15, 28, and 36 years) of fenced grassland and one grazing grassland on the Loess Plateau of China. Our results revealed that soil organic carbon increased by 76.0% in topsoil and 91.6% in subsoil after 36 years of restoration. The bacterial communities were influenced primarily by soil depth, while the fungal communities were highly sensitive to the years of restoration. Microbes in the subsoil recovered faster, and the microbial community structure and functional genes in the soil profiles gradually became more consistent following restoration. In addition, we observed a transition in microbial life history strategies from a persistent K-strategy to a rapid r-strategy during restoration. Notably, the fungal community assembly process played an important role in changes in nutrient cycling genes, which were accompanied by increased carbon fixation and nitrogen mineralization function. Overall, our findings provide several novel insights into the impact of changes in the fungal community on soil nutrient cycling in the soil profile during vegetation restoration.IMPORTANCEOur study revealed that microbes in the subsoil recovered faster than those in the topsoil, which contributed to the reduction in differences in microbial community structure and the distribution of functional genes throughout the soil profile during the restoration process. Importantly, the assembly of fungal communities plays a pivotal role in driving changes in nutrient cycling genes, such as increased carbon fixation and nitrogen mineralization, alongside a reduction in carbon degradation gene abundance. These alterations increase soil organic carbon and nutrient availability during restoration. Our results increase the understanding of the critical role of fungal communities in soil nutrient cycling genes, which facilitate nutrient accumulation in soil profiles during grassland restoration. This insight can guide the development of strategies for manipulating fungal communities to increase soil nutrients in grasslands.

Keystone bacterial groups dominate Escherichia coli O157:H7 survival in long-term reclaimed water headwater stream

Escherichia coli (E. coli) O157:H7 is a highly pathogenic zoonotic bacterium, with water serving as a key medium for its environmental transmission. However, the survival characteristics of E. coli O157:H7 in reclaimed water environments remain poorly understood, which has, to some extent, hindered the development of water reuse technologies. This study examined the survival dynamics of E. coli O157:H7 in a long-term reclaimed water headwater stream through inoculation experiments and identified its main drivers. The results showed that the survival time of E. coli O157:H7 was the longest in the headwater upstream (up to 62 days), gradually decreased as it flowed downstream. Among physicochemical factors, chloride ion, potential of hydrogen, and electrical conductivity were the main factors affecting the survival of E. coli O157:H7. The microbial diversity shown by the alpha diversity index had no significant impact on the E. coli O157:H7 survival. Meanwhile, certain keystone bacterial groups, such as Polynucleobacter, Roseomonas, and Luteolibacter, which are primarily involved in the decomposition of organic matter, suppressed E. coli O157:H7 survival in this stream, while Nitrospira, Dechloromonas, and Sphingomonas promoted the survival of E. coli O157:H7. Overall, the biotic factors have a more direct impact on the E. coli O157:H7 survival compared to abiotic factors in the reclaimed water-replenished stream and deserve more attention. Our research revealed higher biological risks in the upstream sections of the long-term reclaimed water headwater stream, which helped deepen our understanding of pathogen survival in water environments and enhancing our awareness of the biological safety of reclaimed water in ecological replenishment processes.

Soil properties, climate, and topography jointly determine plant community characteristics in marsh wetlands

Various environmental conditions influence the characteristics of plant communities within wetlands. Although the influence of key environmental factors on plant community traits within specific types of wetland ecosystems has been studied extensively, how they regulate plant communities across marsh wetland types remains poorly understood. We examined how environmental conditions influence plant communities in marsh wetlands along the lower Tumen River in northeastern China. We collected and analyzed data on the plant community characteristics (species, height, and coverage), soil physicochemical properties (organic carbon, inorganic nitrogen, and sulfur), and climatic and topographic factors (temperature, precipitation, and elevation) of 56 distinct marsh plots (29 herbaceous, 14 shrub, and 13 forested marshes) to understand how these variables correlate with plant community characteristics across marsh types. The wetland plant diversity varied, with the lowest, intermediate, and highest diversity occurring in herbaceous, shrub, and forested marshes, respectively. Climate, topography, and soil properties had crucial influences on plant diversity and biomass. Structural equation modeling showed that, in herbaceous marshes, plant biomass was primarily determined by soil and plant diversity, with climate exerting an indirect effect. In shrub marshes, soil, climate, and plant diversity directly influenced biomass. In forest marshes, soil and plant diversity directly affected biomass, whereas climate and topography had indirect effects. These findings highlight the complex interactions among environmental factors across marsh ecosystems and their influence mechanisms on biomass, aiding in formulating effective conservation and restoration strategies for marsh wetland ecosystems.

Microenvironment heterogeneity affected by anthropogenic wildfire-perturbed soil mediates bacterial community in Pinus tabulaeformis forests

Introduction

In recent years, the frequency and intensity of anthropogenic wildfires have drastically increased, significantly altering terrestrial ecosystems worldwide. These fires not only devastate vegetative cover but also impact soil environments and microbial communities, affecting ecosystem structure and function. The extent to which fire severity, soil depth, and their interaction influence these effects remains unclear, particularly in Pinus tabulaeformis forests.

Methods

This study investigated the impact of wildfire intensity and soil stratification on soil physicochemical properties and microbial diversity within P. tabulaeformis forests in North China. Soil samples were collected from different fire severity zones (Control, Light, Moderate, High) and depths (topsoil: 0-10 cm; subsoil: 10-20 cm). Analyses included measurements of soil pH, organic carbon (SOC), total nitrogen (TN), and other nutrients. Microbial diversity was assessed using 16S rRNA gene sequencing.

Results

Our findings revealed significant variations in soil pH, SOC, TN, and other nutrients with fire severity and soil depth, profoundly affecting microbial community composition and diversity. Soil pH emerged as a critical determinant, closely linked to microbial α-diversity and community structure. We found that fire severity significantly altered soil pH (p = 0.001), pointing to noteworthy changes in acidity linked to varying severity levels. Topsoil microbial communities primarily differentiated between burned and unburned conditions, whereas subsoil layers showed more pronounced effects of fire severity on microbial structures. Analysis of bacterial phyla across different fire severity levels and soil depths revealed significant shifts in microbial communities. Proteobacteria consistently dominated across all conditions, indicating strong resilience, while Acidobacteriota and Actinobacteriota showed increased abundances in high-severity and light/moderate-severity areas, respectively. Verrucomicrobiota were more prevalent in control samples and decreased significantly in fire-impacted soils. Chloroflexi and Bacteroidota displayed increased abundance in moderate and high-severity areas, respectively. Correlation analyses illustrated significant relationships between soil environmental factors and dominant bacterial phyla. Soil organic carbon (SOC) showed positive correlations with total nitrogen (TN) and alkaline hydrolysable nitrogen (AN). Soil pH exhibited a negative correlation with multiple soil environmental factors. Soil pH and available phosphorus (AP) significantly influenced the abundance of the phylum Myxococcota. Soil water content (WC) significantly affected the abundances of Acidobacteriota and Actinobacteriota. Additionally, ammonium nitrogen (NH4 +-N) and nitrate nitrogen (NO3 --N) jointly and significantly impacted the abundance of the phylum Chloroflexi.

Discussion

This study highlights the significant long-term effects of anthropogenic wildfires on soil microenvironment heterogeneity and bacterial community structure in P. tabulaeformis forests in North China, 6 years post-fire. Our findings demonstrate that fire severity significantly influences soil pH, which in turn affects soil nutrient dynamics and enhances microbial diversity. We observed notable shifts in the abundance of dominant bacterial phyla, emphasizing the critical role of soil pH and nutrient availability in shaping microbial communities. The results underscore the importance of soil stratification, as different soil layers showed varying responses to fire severity, highlighting the need for tailored management strategies. Future research should focus on long-term monitoring to further elucidate the temporal dynamics of soil microbial recovery and nutrient cycling following wildfires. Studies investigating the roles of specific microbial taxa in ecosystem resilience and their functional contributions under varying fire regimes will provide deeper insights. Additionally, exploring soil amendments and management practices aimed at optimizing pH and nutrient availability could enhance post-fire recovery processes, supporting sustainable ecosystem recovery and resilience.

Rocky desertification succession alters soil microbial communities and survival strategies in the karst context

Rocky desertification is one of the most ecological problems in the karst context. Although extensive research has been conducted to explore how to restore and protect, the responses of soil fungi and archaea to rocky desertification succession remain limited. Here, four grades of rocky desertification in a karst ecosystem were selected, amplicon sequencing analysis was conducted to investigate fungal and archaeal community adaptation in response to rocky desertification succession. Our findings revealed that the diversity and community structure of fungi and archaea in soils declined with the aggravation of rocky desertification. As the rocky desertification succession intensified, microbial interactions shifted from cooperation to competition. Microbial survival strategies were K-strategist and r-strategist dominated in the early and late stages of succession, respectively. Additionally, the driving factors affecting microorganisms have shifted from vegetation diversity to soil properties as the intensification of rocky desertification. Collectively, our study highlighted that plant diversity and soil properties play important roles on soil microbiomes in fragile karst ecosystems and that environmental factors induced by human activities might still be the dominant factor exacerbating rocky desertification, which could significantly enrich our understanding of microbial ecology within karst ecosystems.

Soil carbon emissions and influential factors across various stages of vegetation succession in vegetated concrete

After ecological restoration of high and steep slopes in the project disturbed area, soil properties, soil microorganisms, litter types and root types change with the succession of vegetation cover communities. However, the effects of different vegetation successional stages on soil respiration dynamics remain unclear. To elucidate trends and drivers of soil respiration in the context of vegetation succession, we used spatio-temporal alternative applied research. Vegetated concrete-restored slopes (VC) with predominantly herbaceous (GS), shrub (SS), and arborvitae (AS) vegetation were selected, and naturally restored slopes (NS) were used as control. SRS1000 T soil carbon flux measurement system was used to monitor soil respiration rate. The results showed that soil respiration (RS) and fractions of all four treatments showed a single-peak curve, with peaks concentrated in July and August. During the succession of vegetation from herbaceous to arborvitae on VC slopes, RS showed a decreasing trend, and GS was significantly higher than AS by 45%; Compared to NS, RS was 29.81% and 21.56% higher in GS and SS successional stages, respectively, and 27.51% lower in AS stage. RS was significantly and positively correlated with nitrate nitrogen (NO3--N) and microbial biomass nitrogen (MBN), both of which are important factors in regulating RS under vegetation succession. A bivariate model of soil temperature and water content explains the variability of Rs better. Overall, RS was higher than NS in the transition stage and lower than NS in the equilibrium stage of the vegetation community on VC slopes, and the RS decreases gradually with the vegetation succession of artificial ecological restoration slopes.