Exploitation of Enterobacter hormaechei for biodegradation of multiple plastics

Novel microbial technologies for optimizing maize plant-soil systems: the multifunctional strain Enterobacter sp. ES1

BACKGROUND

In recent years, a new microbial technology has emerged to optimize maize field productivity and soil health. This is crucial because of the adverse effects of pesticide contamination and diseases on maize yields.

RESULTS

Enterobacter sp. ES1, a multifunctional strain, effectively degraded 93.09% of nicosulfuron within 4 days. Optimal degradation occurred at 35 °C and pH 6.0, with 4% inoculum and 20 mg L-1 nicosulfuron. Strain ES1 could fix nitrogen and solubilize phosphorus and potassium. It also detoxified potassium and produced chrome azurol S and indole-3-acetic acid. Moreover, it promoted rapid maize seed germination, induced resistance to northern maize leaf blight, and up-regulated maize genes ZmOPR2, ZmPR5, ZmHPL, ZmOX10, ZmPAL, ZmPR1, ZmAOS, and ZmCTR1. Strain ES1R-gfp, prepared using green fluorescent protein and antibiotic domestication methods, functioned as a bacterial fertilizer with 31.04% sawdust, 32.96% straw, and 12.15% biochar, exhibiting a degradation rate of 99.65%.

CONCLUSION

The novel microbial technology of the multifunctional strain ES1 was verified through a pot experiment assessing nicosulfuron concentration and plant and soil indices, thereby providing a foundation for optimizing maize field restoration. © 2025 Society of Chemical Industry.

Deep learning-enhanced hyperspectral imaging for rapid screening of Co-metabolic microplastic-degrading bacteria in environmental samples

Microbial biodegradation of microplastic (MP) emerges as an environmentally benign and highly promising strategy for alleviating MP pollution in the ecosystem. Conventional approaches for screening MP-degrading bacteria use pollutants as the sole carbon source. Co-metabolism plays an essential role in microbial screening, as it enables the discovery of additional degrading microorganisms. However, identifying co-metabolic degrading bacteria is challenging and time-intensive, as not all microorganisms on a co-metabolic medium exhibit degradation capability, increasing the need for refined screening methods. In this study, we propose a novel hyperspectral imaging (HSI) approach to rapidly screen polybutylene adipate terephthalate (PBAT) degrading bacteria directly from co-metabolic media. Hyperspectral images of solid media cultures were acquired, capturing both spatial (image) and spectral (chemical) information. Chemical components in the solid medium exhibit distinct changes under the influence of degrading and non-degrading bacteria. By analyzing the spectral information using machine and deep learning algorithms, it was possible to monitor the PBAT concentration changes in the solid medium, indirectly identifying degrading and non-degrading bacteria. This HSI-based model successfully screened out one kind of PBAT-degrading bacteria validated by traditional method, demonstrating potential for rapid screening of MP-degrading bacteria. With artificial intelligence (AI) technology attracting extensive attention across diverse fields, this study pioneers a new approach for the efficient screening of degrading microorganisms by combining AI algorithms with HSI. This innovative methodology is expected to display significant application potential, thus facilitating the research and development in related fields. SYNOPSIS: This study introduces a highly efficient method to screen co-metabolic MP-degrading bacteria. By combining HSI with deep learning, MP-degrading bacteria can be directly identified on co-metabolism solid media, greatly enhancing the efficiency of screening for MP-degrading microorganisms.

Review: A journey into the black soldier fly digestive system: From current knowledge to applied perspectives

Recent literature on the black soldier fly (BSF) confirms the deep interest in this species for the bioconversion of organic waste, including challenging substrates that contain recalcitrant macromolecules, and highlights the growing trend in new applications for this insect. While protein meal remains the most prominent use of BSF larvae, emerging research is increasingly exploring alternative applications of biomolecules derived from these larvae, including proteins, lipids, chitin, and antimicrobial peptides. Moreover, the high feeding versatility of this insect is being recognised in fields beyond animal feed, such as bioremediation, where its potential ability to degrade contaminants can present significant ecological benefits. Although there is now widespread agreement that a thorough understanding of BSF biology is essential to enlarge the range of applications in which this insect may offer new sustainable solutions, studies on the digestive system are still limited and we are far from having a whole comprehension of the functional features of this complex structure. In fact, the gut is not only the core of the bioconversion process but also represents the first defence barrier against ingested pathogens, and due to the presence of a highly versatile gut microbiota, it may be a potential source of novel microbes and enzymes that could find application in various biotechnological sectors. This review aims to provide a comprehensive overview of the current knowledge on the BSF midgut -the central region of the gut responsible for nutrient digestion and absorption- in both larvae and adults, together with information about mouthparts and the organisation of the alimentary canal. Moreover, starting from the most recent studies on the midgut and its microbiota, we discuss implications for improving larval production, exploiting challenging substrates, and mitigating pollutants in contaminated biomasses.

Enhanced effect of ferrous sulfate on nitrogen retention and PBAT degradation during co-composting by combing with biochar-loaded FN1 bacterial composites

The treatment of biodegradable plastics through composting has garnered increasing attention. This study aimed to investigate the effects of Biochar FN1 bacteria and ferrous sulfate on nitrogen retention, greenhouse gas emissions, and degradable plastics during composting and to elucidate their synergistic mechanisms on microbial communities. Compared with the control, applying biochar-loaded FN1 bacteria composites combined with Ferrous sulfate (SGC) markedly accelerated organic matter degradation and reduced cumulative CO2 and NH3 emissions. The synergistic interaction between the composites and Ferrous sulfate significantly enhanced NH4+-N levels in the thermophilic phase and NO3--N levels in the cooling phase, ultimately decreasing nitrogen loss by 14.9% (P < 0.05) and increasing the seed germination index (GI) by 22.5% (P < 0.05). Additionally, PBAT plastic degradation was improved by 31.6% (P < 0.05). The SGC treatment also altered the richness and diversity of the bacterial community in both the compost and the PBAT plastic sphere, particularly affecting Sphingobacterium, Pseudomonas, and Flavobacterium at the genus level. Symbiotic network analysis and Redundancy Analysis revealed that these functional degradation bacteria were significantly positively correlated with NO3--N levels and PBAT degradation. Furthermore, structural equation modelling indicated a positive relationship between PBAT degradation rate and composting temperature (r = 0.69, p < 0.05). The findings suggested that Fe2+ not only enhanced the FN1 activity but also promoted PBAT degradation by increasing ·OH content on the PBAT plastic sphere. Overall, the combined use of biochar-loaded FN1 bacteria and Ferrous sulfate effectively supports nitrogen retention and plastic degradation during composting.

Microbial strategies for effective microplastics biodegradation: Insights and innovations in environmental remediation

Microplastics (MPs), diminutive yet ubiquitous fragments arising from the degradation of plastic waste, pervade environmental matrices, posing substantial risks to ecological systems and trophic dynamics. This review meticulously examines the origins, distribution, and biological impacts of MPs, with an incisive focus on elucidating the molecular and cellular mechanisms underpinning their toxicity. We highlight the indispensable role of microbial consortia and enzymatic pathways in the oxidative degradation of MPs, offering insights into enhanced biodegradation processes facilitated by innovative pretreatment methodologies. Central to our discourse is the interplay between MPs and biota, emphasizing the detoxification capabilities of microbial metabolisms and enzymatic functions in ameliorating MPs' deleterious effects. Additionally, we address the practical implementations of MP biodegradation in environmental remediation, advocating for intensified research to unravel the complex biodegradation pathways and to forge effective strategies for the expeditious elimination of MPs from diverse ecosystems. This review not only articulates the pervasive challenges posed by MPs but also positions microbial strategies at the forefront of remedial interventions, thereby paving the way for groundbreaking advancements in environmental conservation.

Promoting role of nitrogen-fixing bacteria and biochar on nitrogen retention and degradation of PBAT plastics during composting

Since the increasing number of polybutylene adipate terephthalate (PBAT)-based plastics entering the environment, the search for sustainable treatment methods has become a primary focus of contemporary research. Composting offers a novel approach for managing biodegradable plastics. However, a significant challenge in the composting process is how to control nitrogen loss and enhance plastic degradation. In this context, the effect of various additives on nitrogen retention, PBAT plastics degradation, and microbial community dynamics during composting was investigated. The findings revealed that the addition of nitrogen-fixing bacteria Azotobacter vinelandii and biochar (AzBC) significantly improved nitrogen retention and accelerated PBAT rupture within 40 days of composting. Specifically, the PBAT degradation rate in the AzBC group reached 29.6%, which increased by 12.14% (P < 0.05) compared to the control group. In addition, the total nitrogen (TN) content increased by 6.20% (P < 0.05), and the Nitrogen-fixing enzyme (NIT) content increased by 190 IU/L (P < 0.05). Further analysis of GC-MS confirmed the presence of low molecular weight fragmentation products, such as 6-(4-hydroxybutoxy)-6-oxohexanoic acid. The AzBC treatment promoted the proliferation of Klebsiella at the genus level that could enhance nitrogen retention and the bacteria that have the ability to degrade PBAT, such as Proteobacteria and Firmicutes at the phyla level, and Pseudoxanthomonas, Pseudomonas, and Flavobacterium genera at the genera level (P < 0.05). Correlation analysis indicated that the degradation of PBAT is positively correlated with Temperature (T), NIT, and TN, but negatively correlated with the organic matter (OM) content and germination index (GI). In conclusion, the co-application of biochar and Azotobacter vinelandii offers promising sustainable prospects for enhancing PBAT plastic degradation and reducing nitrogen loss during composting.

Microbial degradation of polyethylene polymer: current paradigms, challenges, and future innovations

Polyethylene (PE) is the second most commonly used plastic worldwide, mainly used to produce single-use items such as bags and bottles. Its significant resistance to natural biodegradation results in the accumulation of PE in landfills, leading to various ecological and toxicological consequences. Despite extensive research on the microbial degradation of PE, achieving complete biodegradation remains a challenge. Comparing experimental outcomes is complicated by the diverse array of microbes involved in PE biodegradation, variations in culture conditions, and differences in assessment tools. This review discusses the critical hurdles in PE biodegradation experiments, including the chemical complexity of PE substrates and the challenges of isolating effective microbes and forming stable consortia. The review also delves into the difficulties in accurately assessing microbial metabolic activity and understanding the biochemical pathways involved in PE degradation. Furthermore, it addresses the pressing issues of metabolic byproducts, slow degradation rates, scalability concerns, and the challenges in measuring biodegradation levels effectively. In addition to outlining the technical challenges associated with PE experiments, this review offers recommendations for future research directions to enhance PE biodegradation outcomes. Overcoming these challenges and implementing the proposed future strategies will improve the reliability, comparability, and practicality of current PE biodegradation experiments, ultimately contributing to better comprehension and management of PE waste in the environment.

Effects of nitrile compounds on the structure and function of soil microbial communities as revealed by metagenomes

The proliferation of nitrile mixtures has significantly exacerbated environmental pollution. This study employed metagenomic analysis to investigate the short-term effects of nitrile mixtures on soil microbial communities and their metabolic functions. It also examined the responses of indigenous microorganisms and their functional metabolic genes across various land use types to different nitrile stressors. The nitrile compound treatments in this study resulted in an increase in the abundance of Proteobacteria, Actinobacteria, and Firmicutes, while simultaneously reducing overall microbial diversity. The key genes involved in the denitrification process, namely, nirK, nosZ, and hao, were down-regulated, and NO3--N, NO2--N, and NH4+-N concentrations decreased by 7.7%-12.3%, 11.1%-21.3%, and 11.3%-30.9%, respectively. Notably, pond sludge samples exhibited a significant increase in the abundance of nitrogen fixation-related genes nifH, vnfK, vnfH, and vnfG following exposure to nitrile compounds. Furthermore, the fumarase gene fumD, which is responsible for catalyzing fumaric acid into malic acid in the tricarboxylic acid cycle, showed a substantial increase of 7.2-10.6-fold upon nitrile addition. Enzyme genes associated with the catechol pathway, including benB-xylY, dmpB, dmpC, dmpH, and mhpD, displayed increased abundance, whereas genes related to the benzoyl-coenzyme A pathway, such as bcrA, dch, had, oah, and gcdA, were notably reduced. In summary, complex nitrile compounds were found to significantly reduce the species diversity of soil microorganisms. Nitrile-tolerant microorganisms demonstrated the ability to degrade and adapt to nitrile pollutants by enhancing functional enzymes involved in the catechol pathway and fenugreek conversion pathway. This study offers insights into the specific responses of microorganisms to compound nitrile contamination, as well as valuable information for screening nitrile-degrading microorganisms and identifying nitrile metabolic enzymes.

Biodegradation of polystyrene (PS) and polypropylene (PP) by deep-sea psychrophilic bacteria of Pseudoalteromonas in accompany with simultaneous release of microplastics and nanoplastics

Plastics dumped in the environment are fragmented into microplastics by various factors (UV, weathering, mechanical abrasion, animal chewing, etc.). However, little is known about plastic fragmentation and degradation mediated by deep-sea microflora. To obtain deep-sea bacteria that can degrade plastics, we enriched in situ for 1 year in the Western Pacific using PS as a carbon source. Subsequently, two deep-sea prevalent bacteria of the genus Pseudoalteromonas (Pseudoalteromonas lipolytica and Pseudoalteromonas tetraodonis) were isolated after 6 months enrichment in the laboratory under low temperature (15 °C). Both showed the ability to degrade polystyrene (PS) and polypropylene (PP), and biodegradation accelerated the generation of micro- and nanoplastics. Plastic biodegradation was evidenced by the formation of carboxyl and carboxylic acid groups, heat resistance decrease and plastic weight loss. After 80 days incubation at 15 °C, the microplastic concentration of PS and PP could be up to 1.94 × 107/L and 5.83 × 107/L, respectively, and the proportion of nanoplastics (< 1 μm) could be up to 65.8 % and 73.6 %. The film weight loss were 5.4 % and 4.5 % of the PS films, and 2.3 % and 1.8 % of the PP films by P. lipolytica and P. tetraodonis, respectively; thus after discounting the weight loss of microplastics, the only 3.9 % and 2.8 % of the PS films, and 1.3 % and 0.7 % of the PP films, respectively, were truly degraded by the two bacteria respectively after 80 days of incubation. This study highlights the role of Pseudoalteromonas in fragmentation and degradation of plastics in cold dark pelagic deep sea.

Continuous generation and release of microplastics and nanoplastics from polystyrene by plastic-degrading marine bacteria

Plastic waste released into the environments breaks down into microplastics due to weathering, ultraviolet (UV) radiation, mechanical abrasion, and animal grazing. However, little is known about the plastic fragmentation mediated by microbial degradation. Marine plastic-degrading bacteria may have a double-edged effect in removing plastics. In this study, two ubiquitous marine bacteria, Alcanivorax xenomutans and Halomonas titanicae, were confirmed to degrade polystyrene (PS) and lead to microplastic and nanoplastic generation. Biodegradation occurred during bacterial growth with PS as the sole energy source, and the formation of carboxyl and carboxylic acid groups, decreased heat resistance, generation of PS metabolic intermediates in cultures, and plastic weight loss were observed. The generation of microplastics was dynamic alongside PS biodegradation. The size of the released microplastics gradually changed from microsized plastics on the first day (1344 nm and 1480 nm, respectively) to nanoplastics on the 30th day (614 nm and 496 nm, respectively) by the two tested strains. The peak release from PS films reached 6.29 × 106 particles/L and 7.64 × 106 particles/L from degradation by A. xenomutans (Day 10) and H. titanicae (Day 5), respectively. Quantification revealed that 1.3% and 1.9% of PS was retained in the form of micro- and nanoplastics, while 4.5% and 1.9% were mineralized by A. xenomutans and H. titanicae at the end of incubation, respectively. This highlights the negative effects of microbial degradation, which results in the continuous release of numerous microplastics, especially nanoplastics, as a notable secondary pollution into marine ecosystems. Their fates in the vast aquatic system and their impact on marine lives are noted for further study.