Biomining for sustainable recovery of rare earth elements from mining waste: A comprehensive review

Direct genome-scale screening of Gluconobacter oxydans B58 for rare earth element bioleaching

The transition to a sustainable energy economy will require an enormous increase in the supply of rare earth elements (REEs). Bioleaching offers a promising alternative to conventional hydrometallurgical methods for REE extraction from low-grade ores. However, exploiting this potential remains challenging due to large gaps in our understanding of the genetics involved, and inadequate biological tools to address them. We generated a highly non-redundant whole-genome knockout collection for the bioleaching microbe Gluconobacter oxydans B58, reducing redundancy by 85% compared to the previous best collection. This new collection was directly screened for bioleaching neodymium from a synthetic monazite powder, identifying 89 genes important for bioleaching, 68 of which have not previously been associated with this mechanism. We conducted bench-scale experiments to validate the extraction efficiency of promising strains: 8 demonstrated significant increases in extraction by up to 111% (δGO_1598, disruption of the gene encoding the orotate phosphoribosyltransferase enzyme PyrE), and one strain significantly reduced it by 97% (δGO_1096, disruption of the gene encoding the GTP-binding protein TypA). Notable changes in pH were only observed for 3 strains, suggesting an important role for non-acid mechanisms in bioleaching. These findings provide valuable insights into further enhancing REE-bioleaching by G. oxydans through genetic engineering.

Valorisation of acid mine drainage: Studying biosorption and bioaccumulation of rare earth elements by seaweeds

Acid mine drainage (AMD) nature, persistence and the considerable amount of toxic elements cause significant environmental damage. Traditional passive treatment systems typically focus on neutralizing AMD using limestone and removing common toxic metal(loid)s, and often overlook the recovery of economic and strategic elements (e.g., rare earth elements (REEs)). This study is aimed at assessing for the first time the use of seaweeds to remove REEs from AMD, transforming an environmental problem into a resource. The ability of three seaweed species (Gracilaria sp., Ulva sp., and Fucus sp.) to remove REEs was studied in their dried (biosorption) and living (bioaccumulation) forms. Bioaccumulation was the most efficient process, with Gracilaria and Ulva species showing better performances (75 and 44 %, respectively), also removing over 60 % of Fe. Adjusting the pH of AMD with NaOH successfully separated unwanted elements with minimal REEs loss. After pH adjustment, REEs removal did not improve for either species, except for Dy removal. Seaweed dosage was crucial for a higher REEs removal, with Gracilaria sp. showing a higher bioconcentration factor (up to 1470). FTIR and SEM-EDS analysis identified sulphonate, carboxyl, and alkyne groups as key in binding elements to Gracilaria sp. biomass. Overall, the results demonstrate that seaweed-based biotechnologies are a promising alternative for treating AMD and recovering valuable elements, which can be easily incorporated into the current passive treatment systems.

Bioleaching of rare earth elements from ores and waste materials: Current status, economic viability and future prospects

Rare earth elements (REEs) are critical components of numerous products widely used in many areas, and the demand for REEs is increasing dramatically in recent years. Physical-chemical leaching is commonly adopted for the recovery of REEs from ores and solid wastes, but concerns over the generation of hazards, operation safety, and environmental pollution have urged the transition to greener and more sustainable leaching methods. Bioleaching is considered an excellent alternative for the recovery of REEs. This review provided an overview on the REEs recovery from primary and secondary resources via different bioleaching strategies. The techno-economics of bioleaching for REEs recovery were highlighted, and key factors affecting the economic viability of bioleaching were identified. Finally, strategies including the utilization of low-cost substrates as feedstocks, non-sterile bioleaching, recycling and reutilization of biolixiviants, and development of robust bioleaching strains were proposed to improve the economic competitiveness of bioleaching. It is expected that this review could serve as a useful guideline on the design of more economically competitive bioleaching processes for the recovery REEs from different resources.

A Model for Mechanical Stress Limited Bacterial Growth and Resporulation in Confinement

In this study, we propose a self-limiting growth model forBacillus subtilisspores confined within porous polyacrylamide (PA) hydrogels. We observed thatB. subtilisspores germinate into vegetative cells within the hydrogel matrix, forming spherical colonies. These colonies expand until the mechanical stress they exert on their environment surpasses the yield stress of the hydrogel, leading to formation of a nonpermeable layer that halts nutrient diffusion and forces the bacteria to resporulate. These novel observations suggest a model to explain why bacterial growth in confined environments and material interfaces may be limited, providing insight for natural phenomena and biotechnological applications involving bacterial encapsulation.

Biomining using microalgae to recover rare earth elements (REEs) from bauxite

Biomining using microalgae has emerged as a sustainable option to extract rare earth elements (REEs). This study aims to (i) explore the capability of REEs recovery from bauxite by microalgae, (ii) assess the change of biochemical function affected by bauxite, and (iii) investigate the effects of operating conditions (i.e., aeration rate, pH, hydraulic retention time) to REEs recovery. The results showed that increasing bauxite in microalgae culture increases REEs recovery in biomass and production of biochemical compounds (e.g., pigments and Ca-Mg ATPase enzyme) up to 10 %. The optimum pulp ratio of bauxite in the microalgae culture ranges from 0.2 % to 0.6 %. Chlorella vulgaris was the most promising, with two times higher in REEs recovery in biomass than the other species. REEs accumulated in microalgae biomass decreased with increasing pH in the culture. This study establishes a platform to make the scaling up of REEs biomining by microalgae plausible.

Development of Broad-Range Microbial Minimal Culture Medium for Lanthanide Studies

Rare Earth Elements (REE), also known as Lanthanides (Ln3+), are a group of 17 elements showing peculiar physical and chemical properties. Unlike technological applications, very little is known about the physiological role and toxicity of Ln3+ on biological systems, in particular on microorganisms (e.g., bacteria), which represent the most abundant domains on our planet. Up to now, very limited studies have been conducted due to Ln3+ precipitation with some anions commonly present in the culture media. Therefore, the development of a minimal medium is essential to allow the study of Ln3+-microbial interactions, limiting considerably the precipitation of insoluble salts. In this regard, a new minimal culture medium capable of solubilizing large amounts of Ln3+ and allowing the growth of different microbial taxa was successfully developed. Assays have shown that the medium is capable of solubilizing Ln3+ up to 100 times more than other common culture media and allowing the growth of 63 bacteria and 5 fungi. The kinetic growth of one yeast and one Gram-positive bacterium has been defined, proving to support superior growth and biomass compared to other commonly used minimal media. Moreover, the sensitivity and uptake/absorption of a Bacillus stratosphericus strain were tested, highlighting its capability to tolerate concentrations up to 10 mM of either Cerium, Gadolinium or Lanthanum and accumulate different quantities of the three.

Microbial recovery of rare earth elements from various waste sources: a mini review with emphasis on microalgae

Rare Earth Elements (REEs) are indispensable in contemporary technologies, influencing various aspects of our daily lives and environmental solutions. The escalating demand for REEs has led to increased exploitation, resulting in the generation of diverse REE-bearing solid and liquid wastes. Recognizing the potential of these wastes as secondary sources of REEs, researchers are exploring microbial solutions for their recovery. This mini review provides insights into the utilization of microorganisms, with a particular focus on microalgae, for recovering REEs from sources such as ores, electronic waste, and industrial effluents. The review outlines the principles and distinctions of bioleaching, biosorption, and bioaccumulation, offering a comparative analysis of their potential and limitations. Specific examples of microorganisms demonstrating efficacy in REE recovery are highlighted, accompanied by successful methods, including advanced techniques for enhancing microbial strains to achieve higher REE recovery. Moreover, the review explores the environmental implications of bio-recovery, discussing the potential of these methods to mitigate REE pollution. By emphasizing microalgae as promising biotechnological candidates for REE recovery, this mini review not only presents current advances but also illuminates prospects in sustainable REE resource management and environmental remediation.

Techno-economic assessment of bioleaching for metallurgical by-products

This study focused on the economic feasibility of two potential industrial-scale bioleaching technologies for metal recovery from specific metallurgical by-products, mainly basic oxygen steelmaking dust (BOS-D) and goethite. The investigation compared two bioleaching scaling technology configurations, including an aerated bioreactor and an aerated and stirred bioreactor across different scenarios. Results indicated that bioleaching using Acidithiobacillus ferrooxidans proved financially viable for copper extraction from goethite, particularly when 5% and 10% pulp densities were used in the aerated bioreactor, and when 10% pulp density was used in the aerated and stirred bioreactor. Notably, a net present value (NPV) of $1,275,499k and an internal rate of return (IRR) of 65% for Cu recovery from goethite were achieved over 20-years after project started using the aerated and stirred bioreactor plant with a capital expenditure (CAPEX) of $119,816,550 and an operational expenditure (OPEX) of $5,896,580/year. It is expected that plant will start to make profit after one year of operation. Aerated and stirred bioreactor plant appeared more reliable alternative compared to the aerated bioreactor plant as the plant consists of 12 reactors which can allow better management and operation in small volume with multiple reactors. Despite the limitations, this techno-economic assessment emphasized the significance of selective metal recovery and plant design, and underscored the major expenses associated with the process.