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Scott FJ, Eddy S, Gullion T, Mentink-Vigier F. Sorbitol-Based Glass Matrices Enable Dynamic Nuclear Polarization beyond 200 K. J Phys Chem Lett 2024; 15:8743-8751. [PMID: 39162721 PMCID: PMC11610384 DOI: 10.1021/acs.jpclett.4c02054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
Abstract
In magic angle spinning dynamic nuclear polarization (MAS-DNP) experiments, paramagnetic species are often dispersed in rigid glass-forming matrices such as glycerol/water mixtures, but their modest glass-transition temperature (Tg) restricts the viable temperature range for MAS-DNP. To expand applications of DNP at higher temperatures, new matrices and physical insights are required. Here we demonstrate that sorbitol, Tg ≈ 267 K, advantageously replaces glycerol, Tg ≈ 190 K, to carry out DNP at higher temperature while maintaining an identical 13C NMR spectrum footprint and thus minimizing spectral overlap. DNP stops being effective in glycerol/water at ∼180 K, but sorbitol/DMSO gives a significant enhancement at 230 K with AsymPol-POK biradicals at 600 MHz/395 GHz. For the first time, a simple analytical model is proposed that provides physical insights and explains the effect of biradical concentration, the temperature dependence of the enhancement, the signal buildup times, and the enhanced signal-to-noise ratio. The model reveals that electron spin relaxation is the limiting factor for high-temperature DNP in the case of AsymPol-POK. We showcase the efficacy of this new DNP formulation on an intriguing chitin sample extracted from cicada exoskeleton which allowed for the recording of rapid heteronuclear correlation spectra at 100 and 225 K.
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Affiliation(s)
- Faith J. Scott
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Dr, Tallahassee, FL, 32310, USA
| | - Samuel Eddy
- Department of Chemistry, West Virginia University, Morgantown, WV, 26506, USA
| | - Terry Gullion
- Department of Chemistry, West Virginia University, Morgantown, WV, 26506, USA
| | - Frédéric Mentink-Vigier
- National High Magnetic Field Laboratory, Florida State University, 1800 E. Paul Dirac Dr, Tallahassee, FL, 32310, USA
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2
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Pradhan BL, Lodhi L, Dey KK, Ghosh M. Analyzing atomic scale structural details and nuclear spin dynamics of four macrolide antibiotics: erythromycin, clarithromycin, azithromycin, and roxithromycin. RSC Adv 2024; 14:17733-17770. [PMID: 38832242 PMCID: PMC11145140 DOI: 10.1039/d4ra00718b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Accepted: 05/26/2024] [Indexed: 06/05/2024] Open
Abstract
The current investigation centers on elucidating the intricate molecular architecture and dynamic behavior of four macrolide antibiotics, specifically erythromycin, clarithromycin, azithromycin, and roxithromycin, through the application of sophisticated solid-state nuclear magnetic resonance (SSNMR) methodologies. We have measured the principal components of chemical shift anisotropy (CSA) parameters, and the site-specific spin-lattice relaxation time at carbon nuclei sites. To extract the principal components of CSA parameters, we have employed 13C 2DPASS CP-MAS SSNMR experiments at two different values of magic angle spinning (MAS) frequencies, namely 2 kHz and 600 Hz. Additionally, the spatial correlation between 13C and 1H nuclei has been investigated using 1H-13C frequency switched Lee-Goldburg heteronuclear correlation (FSLGHETCOR) experiment at a MAS frequency of 24 kHz. Our findings demonstrate that the incorporation of diverse functional groups, such as the ketone group and oxime group with the lactone ring, exerts notable influences on the structure and dynamics of the macrolide antibiotic. In particular, we have observed a significant decrease in the spin-lattice relaxation time of carbon nuclei residing on the lactone ring, desosamine, and cladinose in roxithromycin, compared to erythromycin. Overall, our findings provide detailed insight into the relationship between the structure and dynamics of macrolide antibiotics, which is eventually correlated with their biological activity. This knowledge can be utilized to develop new and more effective drugs by providing a rational basis for drug discovery and design.
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Affiliation(s)
- Bijay Laxmi Pradhan
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
- Department of Physics, Institute of Science, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
| | - Lekhan Lodhi
- Department of Zoology, Dr Harisingh Gour Central University Sagar-470003 Madhya-Pradesh India
| | - Krishna Kishor Dey
- Department of Physics, Dr Harisingh Gour Central University Sagar-470003 Madhya-Pradesh India
| | - Manasi Ghosh
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University Varanasi-221005 Uttar-Pradesh India
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3
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Pradhan B, Yadav JP, Lodhi L, Sen P, Dey KK, Ghosh M. Atomic-Scale Resolution Insights into Structural and Dynamic Differences between Ofloxacin and Levofloxacin. ACS OMEGA 2023; 8:24093-24105. [PMID: 37426250 PMCID: PMC10323956 DOI: 10.1021/acsomega.3c03406] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 06/09/2023] [Indexed: 07/11/2023]
Abstract
This study employs advanced solid-state NMR techniques to investigate the atomic-level structure and dynamics of two enantiomers: ofloxacin and levofloxacin. The investigation focuses on critical attributes, such as the principal components of the chemical shift anisotropy (CSA) tensor, the spatial proximity of 1H and 13C nuclei, and site-specific 13C spin-lattice relaxation time, to reveal the local electronic environment surrounding specific nuclei. Levofloxacin, the levo-isomer of ofloxacin, exhibits higher antibiotic efficacy than its counterpart, and the dissimilarities in the CSA parameters indicate significant differences in the local electronic configuration and nuclear spin dynamics between the two enantiomers. Additionally, the study employs the 1H-13C frequency-switched Lee-Goldburg heteronuclear correlation (FSLGHETCOR) experiment to identify the presence of heteronuclear correlations between specific nuclei (C15 and H7 nuclei and C13 and H12 nuclei) in ofloxacin but not in levofloxacin. These observations offer insights into the link between bioavailability and nuclear spin dynamics, underscoring the significance of NMR crystallography approaches in advanced drug design.
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Affiliation(s)
- Bijay
Laxmi Pradhan
- Department
of Physics, Institute of Science, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
| | - Jai Prakash Yadav
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Prince Sen
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Krishna Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya-Pradesh, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar-Pradesh, India
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Aguirre-Pranzoni C, García MG, Ochoa NA. Structural and conformational changes on chitosan after green heterogeneous synthesis of phenyl derivatives. Carbohydr Polym 2023; 312:120843. [PMID: 37059516 DOI: 10.1016/j.carbpol.2023.120843] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 03/14/2023] [Accepted: 03/20/2023] [Indexed: 03/30/2023]
Abstract
Four aromatic acid compounds: benzoic acid (Bz), 4-hydroxyphenylpropionic acid (HPPA), gallic acid (GA) and 4-aminobenzoic acid (PABA) were covalently bonded to chitosan in order to improve water solubility at neutral pH. The synthesis was performed via a radical redox reaction in heterogeneous phase by employing ascorbic acid and hydrogen peroxide (AA/H2O2) as radical initiators in ethanol. The analysis of chemical structure and conformational changes on acetylated chitosan was also the focus of this research. Grafted samples exhibited as high as 0.46 M degree of substitution (MS) and excellent solubility in water at neutral pH. Results showed a correlation between the disruption of C3-C5 (O3…O5) hydrogen bonds with increasing solubility in grafted samples. Spectroscopic techniques such as FT-IR and 1H and 13C NMR showed modifications in both glucosamine and N-Acetyl-glucosamine units by ester and amide linkage at C2, C3 and C6 position, respectively. Finally, loss of crystalline structure of 2-helical conformation of chitosan after grafting was observed by XRD and correlated with 13C CP-MAS-NMR analyses.
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5
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Yadav JP, Lodhi L, Fatma T, Dey KK, Ghosh M. Investigation of the Influence of Various Functional Groups on the Dynamics of Glucocorticoids. ACS OMEGA 2022; 7:43190-43209. [PMID: 36467925 PMCID: PMC9713872 DOI: 10.1021/acsomega.2c05892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Accepted: 11/02/2022] [Indexed: 06/17/2023]
Abstract
The basic configuration of glucocorticoid consists of four-fused rings associated with one cyclohexadienone ring, two cyclohexane rings, and one cyclopentane ring. The ways the structure and dynamics of five glucocorticoids (prednisone, prednisolone, prednisolone acetate, methylprednisolone, and methylprednisolone acetate) are altered because of the substitution of various functional groups with these four-fused rings are studied thoroughly by applying sophisticated solid-state nuclear magnetic resonance (NMR) methodologies. The biological activities of these glucocorticoids are also changed because of the attachment of various functional groups with these four-fused rings. The substitution of the hydroxyl group (with the C11 atom of the cyclohexane ring) in place of the keto group enhances the potential of the glucocorticoid to cross the cellular membrane. As a result, the bioavailability of prednisolone (the hydroxyl group is attached with the C11 atom of the cyclohexane ring) is increased compared to prednisone (the keto group is attached with the C11 atom of cyclohexane rings). Another notable point is that the spin-lattice relaxation rate at crystallographically distinct carbon nuclei sites of prednisolone is increased compared to that of the prednisone, which implies that the motional degrees of freedom of glucocorticoid is increased because of the substitution of the hydroxyl group in place of the keto group of the cyclohexane ring. The attachment of the methyl group with the C6 atom of cyclohexane rings further reduces the spin-lattice relaxation time at crystallographically distinct carbon nuclei sites of glucocorticoid and its bioactivity is also increased. By comparing the spin-lattice relaxation time and the local correlation time at crystallographically different carbon nuclei sites of three steroids prednisone, prednisolone, and methylprednisolone, it is observed that both the spin-lattice relaxation time and the local correlation time gradually decrease at each crystallographically distinct carbon nuclei sites when we move from prednisone to prednisolone to methyl-prednisolone. On the other hand, if we compare the same for prednisolone, prednisolone acetate, and methylprednisolone acetate, then we also observe that both the spin-lattice relaxation time and the local-correlation time gradually decrease from prednisolone to prednisolone acetate to methylprednisolone acetate for all chemically different carbon nuclei. It is also noticeable that both the spin-lattice relaxation time and the local-correlation time gradually decrease from prednisone to prednisolone to prednisolone acetate to methylprednisolone to methylprednisolone acetate for most of the carbon nuclei sites. From in silico analysis, it is also revealed that the bioavailability and efficacy of the glucocorticoid increase from prednisone to prednisolone to prednisolone acetate to methylprednisolone to methylprednisolone acetate. Hence, it can be concluded that the biological activity and the motional degrees of freedom of the glucocorticoids are highly correlated. These types of studies provide a clear picture of the structure-activity relationship of the drug molecules, which will enlighten the path of developing highly potent glucocorticoids with minimum side effects. Another important aspect of these types of studies is to provide information about the electronics configuration and nuclear spin dynamics at crystallographically different carbon nuclei sites of five glucocorticoids, which will enrich the field of "NMR crystallography".
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Affiliation(s)
- Jai Prakash Yadav
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi, Uttar Pradesh221005, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh470003, India
| | - Tamseel Fatma
- Department
of Bioinformatics, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi, Uttar Pradesh221005, India
| | - Krishna Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh470003, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi, Uttar Pradesh221005, India
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Sushytskyi L, Synytsya A, Mirzayeva T, Kalouskova T, Bleha R, Čopíková J, Kubač D, Grivalský T, Ulbrich P, Kaštánek P. Fractionation of the water insoluble part of the heterotrophic mutant green microalga Parachlorella kessleri HY1 (Chlorellaceae) biomass: Identification and structure of polysaccharides. Int J Biol Macromol 2022; 213:27-42. [PMID: 35623455 DOI: 10.1016/j.ijbiomac.2022.05.108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 05/13/2022] [Accepted: 05/14/2022] [Indexed: 11/17/2022]
Abstract
The water-insoluble part of Parachlorella kessleri HY1 biomass was subjected to the extraction of cell-wall polysaccharides using polar aprotic solvents (DMSO, LiCl/DMSO) and aqueous alkaline solutions (0.1, 1 and 4 mol·l-1 of NaOH). Proteins predominated in all the crude extracts and in the insoluble residues were partially removed by treatment with proteolytic enzymes (pepsin and pronase), and in some cases with the HCl/H2O2 reagent, yielding purified polysaccharide-enriched fractions. These treatments led to the solubilisation of some products in water. The composition and structure of isolated polysaccharides were characterised based on monosaccharide composition, glycosidic linkage and spectroscopic analyses. The DMSO extract contained mainly proteins, and polysaccharides were not detected. The water-soluble parts isolated from the LiCl/DMSO extract contained α-l-rhamnan, α-d-glucan and β-d-glucogalactan; the water-insoluble part contained (1 → 4)-β-d-xylan, first isolated from the biomass of green microalgae. The alkali extracts contained polysaccharides of similar structure, and also water-insoluble (1 → 4)-β-d-mannan. The insoluble part after all extractions contained α-chitin as the main polysaccharide, which was confirmed by spectroscopic methods. All these polysaccharides can play a certain role in the cell wall structure of this microalga.
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Affiliation(s)
- Leonid Sushytskyi
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic.
| | - Andriy Synytsya
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic
| | - Tamilla Mirzayeva
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic
| | - Tereza Kalouskova
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic
| | - Roman Bleha
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic
| | - Jana Čopíková
- Department of Carbohydrates and Cereals, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Czech Republic
| | - David Kubač
- Institute of Microbiology, Czech Academy of Sciences, Centre Algatech, Novohradská 237 - Opatovický mlýn, 379 81 Třebon, Czech Republic
| | - Tomáš Grivalský
- Institute of Microbiology, Czech Academy of Sciences, Centre Algatech, Novohradská 237 - Opatovický mlýn, 379 81 Třebon, Czech Republic
| | - Pavel Ulbrich
- Department of Biotechnology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Technická 5, 166 28 Prague 6 Dejvice, Czech Republic
| | - Petr Kaštánek
- Department of Biotechnology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology in Prague, Technická 5, 166 28 Prague 6 Dejvice, Czech Republic; EcoFuel Laboratories s.r.o, Ocelářská 9, Prague 9 Libeň 190 00, Czech Republic
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7
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Deane OJ, Jennings J, Armes SP. Shape-shifting thermoreversible diblock copolymer nano-objects via RAFT aqueous dispersion polymerization of 4-hydroxybutyl acrylate. Chem Sci 2021; 12:13719-13729. [PMID: 34760156 PMCID: PMC8549797 DOI: 10.1039/d1sc05022b] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 09/27/2021] [Indexed: 11/21/2022] Open
Abstract
2-Hydroxypropyl methacrylate (HPMA) is a useful model monomer for understanding aqueous dispersion polymerization. 4-Hydroxybutyl acrylate (HBA) is an isomer of HPMA: it has appreciably higher aqueous solubility so its homopolymer is more weakly hydrophobic. Moreover, PHBA possesses a significantly lower glass transition temperature than PHPMA, which ensures greater chain mobility. The reversible addition-fragmentation chain transfer (RAFT) aqueous dispersion polymerization of HBA using a poly(ethylene glycol) (PEG113) precursor at 30 °C produces PEG113-PHBA200-700 diblock copolymer nano-objects. Using glutaraldehyde to crosslink the PHBA chains allows TEM studies, which reveal the formation of spheres, worms or vesicles under appropriate conditions. Interestingly, the partially hydrated highly mobile PHBA block enabled linear PEG113-PHBA x spheres, worms or vesicles to be reconstituted from freeze-dried powders on addition of water at 20 °C. Moreover, variable temperature 1H NMR studies indicated that the apparent degree of hydration of the PHBA block increases from 5% to 80% on heating from 0 °C to 60 °C indicating uniform plasticization. In contrast, the PHPMA x chains within PEG113-PHPMA x nano-objects become dehydrated on raising the temperature: this qualitative difference is highly counter-intuitive given that PHBA and PHPMA are isomers. The greater (partial) hydration of the PHBA block at higher temperature drives the morphological evolution of PEG113-PHBA260 spheres to form worms or vesicles, as judged by oscillatory rheology, dynamic light scattering, small-angle X-ray scattering and TEM studies. Finally, a variable temperature phase diagram is constructed for 15% w/w aqueous dispersions of eight PEG113-PHBA200-700 diblock copolymers. Notably, PEG113-PHBA350 can switch reversibly from spheres to worms to vesicles to lamellae during a thermal cycle.
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Affiliation(s)
- Oliver J Deane
- Dainton Building, Department of Chemistry, University of Sheffield Brook Hill Sheffield South Yorkshire S3 7HF UK
| | - James Jennings
- Dainton Building, Department of Chemistry, University of Sheffield Brook Hill Sheffield South Yorkshire S3 7HF UK
| | - Steven P Armes
- Dainton Building, Department of Chemistry, University of Sheffield Brook Hill Sheffield South Yorkshire S3 7HF UK
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Dey KK, Deshmukh MM, Ghosh M. A Description of the Local Structure and Dynamics of Ketoconazole Molecule by Solid‐State NMR Measurements and DFT Calculations: Proposition for NMR Crystallography. ChemistrySelect 2021. [DOI: 10.1002/slct.202102622] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Krishna Kishor Dey
- Department of Physics Dr. Harisingh Gour Central University Sagar 470003, Madhya-Pradesh India
| | - Milind M. Deshmukh
- Department of Chemistry Dr. Harisingh Gour Central University Sagar 470003, Madhya-Pradesh India
| | - Manasi Ghosh
- Physics Section MMV Banaras Hindu University Varanasi 221005, Uttar-Pradesh India
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9
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Dey KK, Ghosh M. Study of the structure and dynamics at various parts of the antibacterial drug molecule cefpodoxime proxetil. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2021; 115:101752. [PMID: 34340119 DOI: 10.1016/j.ssnmr.2021.101752] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 07/26/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
The structure and dynamics of cefpodoxime proxetil are elucidated by measuring chemical shift anisotropy (CSA) tensor, spin-lattice relaxation time, and local correlation time at twenty-one crystallographically different 13C nuclei sites. The principal components of CSA tensor of cefpodoxime proxetil are extracted by the two-dimensional phase adjusted sinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) solid-state NMR experiment, and the spin-lattice relaxation time is measured by the method outlined by Torchia(T1CP). The local correlation time is calculated by bearing in mind that the spin-lattice relaxation mechanism of 13C nuclei is mainly governed by the CSA interaction and the heteronuclear dipole-dipole interaction. The aminothiazole ring, β-lactam ring, and dihydrothiazine ring provide stability to the drug molecule and increase the affinity of the drug to penicillin-binding proteins (PBPs) receptors. The principal components of CSA parameters, spin-lattice relaxation time, and local correlation time vary substantially for carbon nuclei residing on these three rings. These signify that not only the electronic environment, but the molecular conformation, and the local dynamics are also altered within the ring. The substitution of the acyl side chain, oxime group, and the aminothiazole ring at the C7 position of the β-lactam ring enhances the antibacterial activity and the binding affinity of the drug. A huge variation of the spin-lattice relaxation time and local correlation time is observed in those regions. The change in the electron charge distribution and nuclear spin dynamics at different parts of the drug molecule is clear by CSA and spin-lattice relaxation measurements, which will enrich the field "NMR crystallography".
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar, 470003, Madhya-Pradesh, India
| | - Manasi Ghosh
- Physics Section, MMV, Banaras Hindu University, Varanasi, 221005, Uttar-Pradesh, India.
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10
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Dey K, Lodhi L, Ghosh M. Study of the Variation of the Electronic Distribution and Motional Dynamics of Two Independent Molecules of an Asymmetric Unit of Atorvastatin Calcium by Solid-State NMR Measurements. ACS OMEGA 2021; 6:22752-22764. [PMID: 34514246 PMCID: PMC8427786 DOI: 10.1021/acsomega.1c03095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
Significant changes in the spin-lattice time and chemical shift anisotropy (CSA) parameters are observed in two independent molecules of an asymmetric unit of atorvastatin calcium (ATC-I) (which is referred to as "a"- and "b"-type molecules by following Wang et al.). The longitudinal magnetization decay curve is fitted by two exponentials-one with longer relaxation time and another with shorter relaxation time for most of the carbon nuclei sites. The local correlation time also varies significantly. This is the experimental evidence of the coexistence of two different kinds of motional degrees of freedom within ATC-I molecule. The solubility and bioavailability of the drug molecule are enhanced due to the existence of two different kinds of dynamics. Hence, the macroscopic properties like solubility and bioavailability of a drug molecule are highly correlated with its microscopic properties. The motional degrees of freedom of "a"- and "b"-type molecules are also varied remarkably at certain carbon nuclei sites. This is the first time the change in the molecular dynamics of two independent molecules of an asymmetric unit of atorvastatin calcium is quantified using solid-state NMR methodology. These types of studies, in which the chemical shift anisotropy (CSA) parameters and spin-lattice relaxation time provide information about the change in electronic distribution and the spin dynamics at the various crystallographic location of the drug molecule, will enrich the field "NMR crystallography". It will also help us to understand the electronic distribution around a nucleus and the nuclear spin dynamics at various parts of the molecule, which is essential to develop the strategies for the administration of the drug.
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Affiliation(s)
- Krishna
Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Lekhan Lodhi
- Department
of Zoology, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Manasi Ghosh
- Physics
Section, Mahila Maha Vidyalaya, Banaras
Hindu University, Varanasi 221005, Uttar Pradesh, India
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11
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Dey KK, Gayen S, Ghosh M. Structure and dynamics of sodium alginate as elucidated by chemical shift anisotropy and site-specific spin-lattice relaxation time measurements. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2021; 50:963-977. [PMID: 34254174 DOI: 10.1007/s00249-021-01559-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 03/31/2021] [Accepted: 06/26/2021] [Indexed: 11/29/2022]
Abstract
The biocompatible, biodegradable, linear copolymer sodium alginate is fabricated from [Formula: see text] linked [Formula: see text]-D-mannuronic acid (M block) and [Formula: see text]-L-guluronic acid (G-block). It has wide applications in drug delivery, cell encapsulation, and commercial application in the textile, cosmetics, paper, food, biomedical, and pharmaceutical industries. The structure and dynamics of sodium alginate were here investigated by measuring chemical shift anisotropy (CSA) parameters, spin-lattice relaxation time, and molecular correlation time. The principal components of the CSA tensor were determined by two-dimensional phase-adjusted spinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) SSNMR. The alternating M and G blocks of both equatorial and axial links are associated with greater overall flexibility. The molecular correlation time of the carboxyl carbon of both G and M blocks is faster than for the anomeric carbon and pyranose carbon. This is further experimental evidence of the coexistence of two different dynamics within the polysaccharide chains of sodium alginate, which was previously established by 1H-13C dipolar profile analysis. The relaxation time of the para-crystalline region of sodium alginate is comparable with that of chitosan, but it is much shorter than that of cellulose and chitin. The order of the molecular correlation time of sodium alginate and chitosan is also the same. Hence, it can be concluded that sodium alginate exhibits greater flexibility than cellulose and chitin. These types of investigation into the local electronic configuration and nuclear spin dynamics at various carbon nuclei sites of the biopolymer at atomic-scale resolution will help in the design of biomimetic materials.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar, 470003, India
| | - Shovanlal Gayen
- Department of Pharmaceutical Sciences, Dr. Harisingh Gour Central University, Sagar, 470003, India
| | - Manasi Ghosh
- Physics Section, MMV, Banaras Hindu University, Varanasi, 221005, India.
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12
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Tsurkan MV, Voronkina A, Khrunyk Y, Wysokowski M, Petrenko I, Ehrlich H. Progress in chitin analytics. Carbohydr Polym 2021; 252:117204. [DOI: 10.1016/j.carbpol.2020.117204] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 09/26/2020] [Accepted: 09/28/2020] [Indexed: 12/25/2022]
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13
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Bhowal R, Balaraman AA, Ghosh M, Dutta S, Dey KK, Chopra D. Probing Atomistic Behavior To Unravel Dielectric Phenomena in Charge Transfer Cocrystals. J Am Chem Soc 2020; 143:1024-1037. [DOI: 10.1021/jacs.0c11459] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Rohit Bhowal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
| | - Anina Anju Balaraman
- Materials Science Division, Council of Scientific and Industrial Research, National Aerospace Laboratories, Kodihalli, Bengaluru 560017, Karnataka, India
| | - Manasi Ghosh
- Physics Section, Mahila Maha Vidyalaya, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Soma Dutta
- Materials Science Division, Council of Scientific and Industrial Research, National Aerospace Laboratories, Kodihalli, Bengaluru 560017, Karnataka, India
| | - Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar 470003, Madhya Pradesh, India
| | - Deepak Chopra
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462066, Madhya Pradesh, India
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14
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Dey K, Ghosh M. Investigation of the Structure and Dynamics of Antiviral Drug Adefovir Dipivoxil by Site-Specific Spin-Lattice Relaxation Time Measurements and Chemical Shift Anisotropy Tensor Measurements. ACS OMEGA 2020; 5:29373-29381. [PMID: 33225168 PMCID: PMC7676337 DOI: 10.1021/acsomega.0c04205] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 10/26/2020] [Indexed: 06/11/2023]
Abstract
Adefovir is regarded as a potential antiviral agent. However, it cannot be considered as a valuable drug candidate due to its high polarity that limits its permeability across the human intestinal mucosa. When the ribose phosphate group of adefovir is replaced by the isopolar phosphonomethyl ether functionality, it neutralizes the negative charge of the drug. This makes the drug lipid-soluble and potent to diffuse across the cell membrane. The prodrug adefovir dipivoxil is regarded as a potent antiviral drug against hepatitis B virus (HBV), human immunodeficiency virus (HIV), Rauscher murine leukemia virus (R-MuLV), murine cytomegalovirus (MCMV), herpes simplex virus (HSV), simian immunodeficiency virus (SIV), and feline immunodeficiency virus (FIV). The correlation between the structure and the dynamics of adefovir dipivoxil is determined by measuring the principal components of chemical shift anisotropy (CSA) tensor, site-specific spin-lattice relaxation time, and molecular correlation time at crystallographically different carbon nuclei sites. The CSA parameters, spin-lattice relaxation time, and molecular correlation time of phosphorous nucleus of the organophosphate group of adefovir dipivoxil molecule are also determined. The spin-lattice relaxation time of carbon nuclei varies from 1 to 107 s. The range of molecular correlation time also varies from 10-4 to 10-8 s. These remarkable diversities of motional dynamics of the molecules imply that there exist various motional degrees of freedom within this valuable drug and these motional degrees of freedom are independent of each other, which may be the reason for the biological activities exhibited by the drug. The correlation between structure and dynamics of such an important antiviral drug adefovir dipivoxil can be visualized by these types of extensive spectroscopic measurements, which will enlighten the path of inventing advanced medicine in the pharmaceutical industry, and it will also illuminate the understanding of the structure-activity relationships of antiviral drug.
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Affiliation(s)
- Krishna
Kishor Dey
- Department
of Physics, Dr. Harisingh Gour Central University, Sagar, 470003 MP, India
| | - Manasi Ghosh
- Physics
Section, MMV, Banaras Hindu University, Varanasi, 221005 UP, India
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15
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Dey KK, Ghosh M. Determination of the correlation between the structure and dynamics of deflazacort by solid state NMR measurements. NEW J CHEM 2020. [DOI: 10.1039/d0nj03418e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The correlation between the structure and dynamics of glucocorticoid deflazacort is determined by a 2DPASS CP-MAS SSNMR experiment and 13C spin–lattice relaxation time by a Torchia CP experiment.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Physics Section
- MMV
- Banaras Hindu University
- Varanasi-221005
- India
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16
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Dey KK, Ghosh M. Understanding the effect of deacetylation on chitin by measuring chemical shift anisotropy tensor and spin lattice relaxation time. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2019.136782] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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17
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Ghosh M, Gayen S, Dey KK. An atomic resolution description of folic acid using solid state NMR measurements. RSC Adv 2020; 10:24973-24984. [PMID: 35517491 PMCID: PMC9055165 DOI: 10.1039/d0ra03772a] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Accepted: 06/15/2020] [Indexed: 11/21/2022] Open
Abstract
The chemical shift anisotropy tensor and site-specific spin-lattice relaxation time of folic acid were determined by a 13C 2DPASS CP-MAS NMR experiment and Torchia CP experiment respectively. The molecular correlation time at various carbon nuclei sites of folic acid was evaluated by assuming that the 13C spin-lattice relaxation mechanism is mainly governed by chemical shift anisotropy interaction and hetero-nuclear dipole–dipole coupling. CSA parameters are larger for the carbon nuclei residing at the heteroaromatic ring and aromatic ring, and those attached to double-bonded electronegative oxygen atoms. It is comparatively low for C9, C19, C21, and C22. The molecular correlation time is of the order of 10−4/10−5 s for C9, C19, C21 and C22 carbon nuclei, whereas it is of the order of 10−3 s for the rest of the carbon nuclei sites. Spin lattice relaxation time varies from 416 s to 816 s. For C23 and C14, the value is 816 s, and it is 416 s for C7 nuclei. The correlation between structure and dynamics on an atomic scale of such an important drug as folic acid can be visualized by these types of extensive spectroscopic measurements, which will help to develop an advanced drug for DNA replication. The chemical shift anisotropy tensor and site specific spin-lattice relaxation time of folic acid were determined by a 13C 2DPASS CP-MAS NMR experiment and Torchia CP experiment respectively.![]()
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Affiliation(s)
- Manasi Ghosh
- Department of Physics
- Dr Harisingh Gour Central University
- Sagar-470003
- India
| | - Shovanlal Gayen
- Department of Pharmaceutical Sciences
- Dr Harisingh Gour Central University
- Sagar-470003
- India
| | - Krishna Kishor Dey
- Department of Physics
- Dr Harisingh Gour Central University
- Sagar-470003
- India
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18
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Dey KK, Ghosh M. Understanding the structure and dynamics of anti-inflammatory corticosteroid dexamethasone by solid state NMR spectroscopy. RSC Adv 2020; 10:37564-37575. [PMID: 35521289 PMCID: PMC9057149 DOI: 10.1039/d0ra05474g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 10/01/2020] [Indexed: 12/31/2022] Open
Abstract
For decades corticosteroid dexamethasone has been applied as an anti-inflammatory, immunosuppressant, and decongestant, in the prevention of postoperative nausea and vomiting (PONV), and for auto-immune diseases, allergic reactions, total hip arthroplasty (THA), and cancer. Recently in vitro studies suggested that it may be beneficial to deal with the COVID-19 pandemic. This important drug molecule was investigated by solid state NMR measurements to provide more complete features of its structure and dynamics at atomic scale resolution. The spin–lattice relaxation time at twenty-two different carbon sites of dexamethasone was determined by the Torchia CP method. The principle components of the chemical shift anisotropy tensor were determined by 13C two-dimensional phase adjusted spinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) solid state NMR experiments. The molecular correlation time at twenty-two crystallographically different carbon sites of dexamethasone was calculated by considering that the spin–lattice relaxation mechanism of the 13C nucleus is mainly governed by the chemical shift anisotropy interaction and the heteronuclear dipole–dipole coupling. The spin–lattice relaxation time of carbon nuclei resides on ‘A’, ‘B’, ‘C’, and ‘D’ rings and the side-chain of dexamethasone is quite large, which implies the close-packed arrangement of the molecule. The difference in molecular correlation time at various regions of the molecule demonstrates the existence of different degrees of freedom within the molecule. This may be the reason for the various biological activities exhibited by the molecule. These types of detailed features of the structure and dynamics of such an important drug with multiple biological activities are necessary to develop the advanced medicine and it will also help to understand the structure–activity relationships of corticosteroid. The structure and dynamics of dexamethasone is determined by measuring CSA tensor, site-specific spin–lattice relaxation time.![]()
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr. Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Physics Section
- MMV
- Banaras Hindu University
- Varanasi-221005
- India
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Dey KK, Gayen S, Ghosh M. Understanding the correlation between structure and dynamics of clocortolone pivalate by solid state NMR measurement. RSC Adv 2020; 10:4310-4321. [PMID: 35495240 PMCID: PMC9049206 DOI: 10.1039/c9ra09866f] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Accepted: 01/09/2020] [Indexed: 11/21/2022] Open
Abstract
Structural characteristics of clocortolone pivalate are unique in the topical corticosteroid field having high penetration power through the stratum corneum of skin as well as low corticosteroid-related adverse effects.
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Affiliation(s)
| | - Shovanlal Gayen
- Department of Pharmaceutical Sciences
- Dr Harisingh Gour Central University
- Sagar
- India
| | - Manasi Ghosh
- Department of Physics
- Dr Harisingh Gour Central University
- Sagar
- India
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20
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Dey KK, Ghosh M. Determination of chemical shift anisotropy tensor and molecular correlation time of proton pump inhibitor omeprazole by solid state NMR measurements. NEW J CHEM 2020. [DOI: 10.1039/d0nj01827a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The correlation between the structure and dynamics of omeprazole is portrayed by extracting CSA parameters through the 13C 2DPASS CP-MAS SSNMR experiment, site specific spin–lattice relaxation time by Torchia CP experiment, and calculation of the molecular correlation time.
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Affiliation(s)
- Krishna Kishor Dey
- Department of Physics
- Dr. Harisingh Gour Central University
- Sagar-470003
- India
| | - Manasi Ghosh
- Department of Physics (MMV Section)
- Banaras Hindu University
- Varanasi-221005
- India
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21
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Dey K, Gayen S, Ghosh M. Investigation of the Detailed Internal Structure and Dynamics of Itraconazole by Solid-State NMR Measurements. ACS OMEGA 2019; 4:21627-21635. [PMID: 31867560 PMCID: PMC6921643 DOI: 10.1021/acsomega.9b03558] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 11/19/2019] [Indexed: 06/10/2023]
Abstract
The structure and dynamics of itraconazole were investigated by 13C 2DPASS MAS SSNMR and spin-lattice relaxation time measurement to get an insight into its multiple biological activities, e.g., antifungal, antiviral, anticancer activities, etc. The molecular correlation time at chemically different sites of carbon nuclei was calculated by considering that the spin-lattice relaxation mechanism is mainly dominated by chemical shift anisotropy interaction and heteronuclear dipole-dipole interaction. The spin-lattice relaxation time is long for C35, C6, C5, and C34 carbon nuclei that participated in the 1, 2, 4-triazole ring. On the contrary, it is comparatively shorter for C1, C2, C3, and C4 carbon nuclei associated with the sec-butyl group in the triazolane side-chain region. Chemical shift anisotropy (CSA) parameters of C5, C6, C34, and C35 nuclei are much higher than those of C1, C2, C3, C4 nuclei, indicating that the relaxation mechanism at a high value of magnetic field is predominated by chemical shift anisotropy interaction. The molecular correlation time of carbon nuclei residing at the side-chain region is 2-3 orders of magnitude lesser than that of those participated in the 1,2,4-triazole ring. The spin-lattice relaxation time is very long for carbon nuclei C28 and C30 bonded with chlorine. Asymmetry and anisotropy parameters are also very high for the spinning CSA sideband pattern corresponding to the C28 and C30 nuclei. The molecular correlation time is on the order of 10-3 s for C28 and 10-4 s for C30, whereas for side-chain carbon nuclei, it is on the order of 10-6 s. This suggests that the effective magnetic field experienced by C28 and C30 nuclei is affected by the polarization of the chemical bond. A huge variation in molecular correlation time is observed for chemically different sites of carbon nuclei of the itraconazole molecule. These investigations vividly portrayed how the structure is correlated with the dynamics of a valuable drug, itraconazole, with multiple biological activities. This study will enlighten the way of inventing advance medicine for multiple biological activities in the pharmaceutical industry.
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Affiliation(s)
- Krishna
Kishor Dey
- Department
of Physics and Department of Pharmaceutical Sciences, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh 470003, India
| | - Shovanlal Gayen
- Department
of Physics and Department of Pharmaceutical Sciences, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh 470003, India
| | - Manasi Ghosh
- Department
of Physics and Department of Pharmaceutical Sciences, Dr. Harisingh Gour Central University, Sagar, Madhya Pradesh 470003, India
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22
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Ghosh M, Kango N, Dey KK. Investigation of the internal structure and dynamics of cellulose by 13C-NMR relaxometry and 2DPASS-MAS-NMR measurements. JOURNAL OF BIOMOLECULAR NMR 2019; 73:601-616. [PMID: 31414362 DOI: 10.1007/s10858-019-00272-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 07/15/2019] [Indexed: 06/10/2023]
Abstract
Internal structure and dynamics of commercial and natural cellulose were studied by measuring chemical shift anisotropy (CSA) parameters, and spin-lattice relaxation rate (1/T1) at each and every chemically different carbon nuclear site. CSA parameters were measured by 13C two-dimensional phase adjusted spinning sideband (2DPASS) cross-polarization magic angle spinning (CP-MAS) NMR experiment. Site specific spin-lattice relaxation time was measured by Torchia-CP method. Anisotropy parameters of C4 and C6 regions are higher than C1 and C235 regions and asymmetry of C4 line is lower than any other carbon site. The higher values of CSA parameters of C4 and C6 nuclei arise due to the rotation of O4-C4, C1-O4, O5-C5-C6-O6 and C4-C5-C6-O6 bonds at torsion angles ψ, Φ, χ and χ' respectively and the influence of interchain and intrachain hydrogen bondings. Two distinct peaks are also observed for C4 and C6 resonance line position-one peak arises primarily due to the nuclei in amorphous region and another one arises due to the same nuclei resides in paracrystalline region. The spin-lattice relaxation time and the CSA parameters are different at these two distinct peak positions of C4 and C6 line. Molecular correlation time of each and every chemically different carbon site was calculated with the help of CSA parameters and spin-lattice relaxation time. The molecular correlation time of the amorphous region is one order of magnitude less than the crystalline region. The distinction between amorphous and paracrystalline regions of cellulose is more vividly portrayed by determining spin-lattice relaxation time, CSA parameters, and molecular correlation time at each and every chemically different carbon site. This type of study correlating the structure and dynamics of cellulose will illuminate the path of inventing biomimetic materials.
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Affiliation(s)
- Manasi Ghosh
- Department of Physics, Dr. Harisingh Gour Central University, Sagar, MP, 470003, India
| | - Naveen Kango
- Department of Microbiology, Dr. Harisingh Gour Central University, Sagar, MP, 470003, India
| | - Krishna Kishor Dey
- Department of Physics, Dr. Harisingh Gour Central University, Sagar, MP, 470003, India.
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