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Soda AK, Huang T, Zhou W, Chen H, Jiang H, Jadhav SB, Xing Z, Yu Y, Tian L, Wong DF, Perlmutter JS, Ni R, Benzinger TLS, Tu Z. Synthesis and in vivo biological characterization of six carbon-11 sigma-1 receptor radiotracers in rodent and nonhuman primate. Bioorg Med Chem 2025; 126:118218. [PMID: 40339216 DOI: 10.1016/j.bmc.2025.118218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Revised: 04/16/2025] [Accepted: 04/25/2025] [Indexed: 05/10/2025]
Abstract
Six enantiomers of three racemic sigma-1 receptor (σ1R) ligands were resolved, and absolute configuration was determined. Their high σ1R potency and selectivity were determined through in vitro binding assays, further validated by molecular docking analysis. Central Nervous System Multiparameter Optimization algorithm (CNS MPO) predicts efficient brain penetration for these enantiomers. Six C-11 radiotracers were radiosynthesized successfully, ex vivo biodistribution in rats showed that (-)-[11C]7 had high brain uptake of ∼4.8-fold for 5 min versus 60 min. Mouse brain PET imaging studies showed (-)-[11C]7 and (-)-[11C]16 have in vivo binding specificity for σ1R. Macaque PET scans showed high brain uptake for all six radiotracers, with (-)-[11C]7 peaked at ∼45 min (SUV 2.5), possessing the best washout kinetics and highest cerebellum-to-white matter ratio (∼3.1), in agreement with in vitro or ex vivo measures of σ1R expression. Radiometabolite analysis showed that no newly formed radiometabolite was observed post-injection of (-)-[11C]7. Our data suggest that further evaluation is warranted to determine that (-)-[11C]7 is a suitable PET radiotracer for imaging σ1R in the brain of animal and human.
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Affiliation(s)
- Anil Kumar Soda
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Tianyu Huang
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Wenjuan Zhou
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Hong Chen
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Hao Jiang
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Sandip B Jadhav
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Zhimin Xing
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Yanbo Yu
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Linlin Tian
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Dean F Wong
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Joel S Perlmutter
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Neuroscience, Programs in Physical Therapy and Occupational Therapy, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Ruiqing Ni
- Institute for Regenerative Medicine, University of Zurich, Zurich, Switzerland; Institute for Biomedical Engineering, University of Zurich & ETH Zurich, Zurich, Switzerland
| | - Tammie L S Benzinger
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA
| | - Zhude Tu
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110, USA.
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Dubovik V, Dalinova A, Berestetskiy A. Natural ten-membered lactones: sources, structural diversity, biological activity, and intriguing future. Nat Prod Rep 2024; 41:85-112. [PMID: 37885339 DOI: 10.1039/d3np00013c] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2023]
Abstract
Covering: 2012 to 2022Ten-membered lactones (TMLs) are an interesting and diverse group of natural polyketides that are abundant in fungi and, to a lesser extent, in bacteria, marine organisms, and insects. TMLs are known for their ability to exhibit a wide spectrum of biological activity, including phytotoxic, cytotoxic, antifungal, antibacterial, and others. However, the random discovery of these compounds by scientific groups with various interests worldwide has resulted in patchy information about their distribution among different organisms and their biological activity. Therefore, despite more than 60 years of research history, there is still no common understanding of the natural sources of TMLs, their structural type classification, and most characteristic biological activities. The controversial nomenclature, incorrect or erroneous structure elucidation, poor identification of producing organisms, and scattered information on the biological activity of compounds - all these factors have led to the problems with dereplication and the directed search for TMLs. This review consists of two parts: the first part (Section 2) covers 104 natural TMLs, published between 2012 and 2022 (after the publishing of the previous review), and the second part (Section 3) summarizes information about 214 TMLs described during 1964-2022 and as a result highlights the main problems and trends in the study of these intriguing natural products.
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Affiliation(s)
- Vsevolod Dubovik
- Laboratory of Phytotoxicology and Biotechnology, All-Russian Institute of Plant Protection, Pushkin, 196608 Saint-Petersburg, Russia.
| | - Anna Dalinova
- Laboratory of Phytotoxicology and Biotechnology, All-Russian Institute of Plant Protection, Pushkin, 196608 Saint-Petersburg, Russia.
| | - Alexander Berestetskiy
- Laboratory of Phytotoxicology and Biotechnology, All-Russian Institute of Plant Protection, Pushkin, 196608 Saint-Petersburg, Russia.
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Schmidt B. The Role of Total Synthesis in Structure Revision and Elucidation of Decanolides (Nonanolides). PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2021; 115:1-57. [PMID: 33797640 DOI: 10.1007/978-3-030-64853-4_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Ten-membered lactones are commonly observed structures of natural products. They are mostly fungal metabolites, which often act as plant pathogens, but recently ten-membered lactones were identified as pheromones of frogs and termites. Although modern spectroscopic methods are nowadays routinely used to elucidate the structure of natural products, structural assignments of ten-membered lactones often remain incomplete or are surprisingly often erroneous. Most errors concern the absolute configuration. The examples discussed in this chapter demonstrate that enantioselective total synthesis is not only an efficient tool for corroborating or revising a proposed structure, but that the synthesis of different stereoisomers as references for gas chromatographic investigations can be a vital part of the structure elucidation process if only minute amounts of material are available. As a method of outstanding importance for the synthesis of ten-membered lactones olefin metathesis has emerged. Most of the examples discussed herein use one or more olefin metathesis reactions as key steps.
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Affiliation(s)
- Bernd Schmidt
- Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, 14476, Potsdam-Golm, Germany.
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Chandra N, Fernandes RA. A Chiron Approach to the Stereoselective Total Synthesis of Phomonol and Phytotoxic Nonenolides. European J Org Chem 2020. [DOI: 10.1002/ejoc.201901901] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Naveen Chandra
- Department of Chemistry Indian Institute of Technology Bombay 400076 Powai Mumbai Maharashtra India
| | - Rodney A. Fernandes
- Department of Chemistry Indian Institute of Technology Bombay 400076 Powai Mumbai Maharashtra India
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Dalinova A, Dubovik V, Chisty L, Kochura D, Ivanov A, Smirnov S, Petrova M, Zolotarev A, Evidente A, Berestetskiy A. Stagonolides J and K and Stagochromene A, Two New Natural Substituted Nonenolides and a New Disubstituted Chromene-4,5-dione Isolated from Stagonospora cirsii S-47 Proposed for the Biocontrol of Sonchus arvensis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:13040-13050. [PMID: 31670962 DOI: 10.1021/acs.jafc.9b04573] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Two new natural 10-membered macrolides (1, 2) and one chromene-4,5-dione derivative (3), named stagonolides J and K and stagochromene A, respectively, were isolated from the phytopathogenic fungus Stagonospora cirsii S-47, together with two known compounds, stagonolide A (4) and herbarumin I (5). Stagonolides J and K and stagochromene A were characterized as (5E,7R*,8S*,9R*)-7,8-dihydroxy-9-propyl-5-nonen-9-olide, (5E,7R,9S)-7-hydroxy-9-propyl-5-nonen-9-olide, and (2R*,3R*)-3-hydroxy-2-propyltetrahydro-2H-chromene-4,5(3H,4aH)-dione, respectively, by spectroscopic (mostly by NMR and ESIMS) data. Compounds 1-5 showed different rates of phytotoxic activity on punctured leaf discs of Sonchus arvensis. The antimicrobial, cytotoxic, and antiprotozoal activity of isolated compounds was also evaluated. Based on our data, stagonolide K and herbarumin I can be proposed as a potential scaffold for the development of a new natural herbicide and estimated as possible selection/quality markers of a bioherbicide based on S. cirsii, while stagonolide A can be considered as a mycotoxin.
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Affiliation(s)
- Anna Dalinova
- All-Russian Institute of Plant Protection , Russian Academy of Agricultural Sciences , Podbelskogo st., 3 , Pushkin , Saint-Petersburg 196608 , Russian Federation
| | - Vsevolod Dubovik
- All-Russian Institute of Plant Protection , Russian Academy of Agricultural Sciences , Podbelskogo st., 3 , Pushkin , Saint-Petersburg 196608 , Russian Federation
- Higher School of Technology and Energy (HSTE) , Saint Petersburg State University of Technology and Design , Ivana Chernyh st., 4 , Saint-Petersburg 198095 , Russian Federation
| | - Leonid Chisty
- Research Institute of Hygiene, Occupational Pathology and Human Ecology , Federal Medical Biological Agency , p/o Kuz'molovsky, Kapitolovo, 93 , Saint-Petersburg 188663 , Russian Federation
| | - Dmitriy Kochura
- Research Institute of Hygiene, Occupational Pathology and Human Ecology , Federal Medical Biological Agency , p/o Kuz'molovsky, Kapitolovo, 93 , Saint-Petersburg 188663 , Russian Federation
| | - Alexander Ivanov
- St. Petersburg State University , Universitetsky Av. 26 , St. Petersburg 198504 , Russian Federation
| | - Sergey Smirnov
- St. Petersburg State University , Universitetsky Av. 26 , St. Petersburg 198504 , Russian Federation
| | - Maria Petrova
- All-Russian Institute of Plant Protection , Russian Academy of Agricultural Sciences , Podbelskogo st., 3 , Pushkin , Saint-Petersburg 196608 , Russian Federation
| | - Andrey Zolotarev
- St. Petersburg State University , Universitetsky Av. 26 , St. Petersburg 198504 , Russian Federation
| | - Antonio Evidente
- Dipartimento di Scienze Chimiche , Università di Napoli Federico II, Complesso Universitario Monte Sant'Angelo , Via. Cintia 4 , 80126 Napoli , Italy
| | - Alexander Berestetskiy
- All-Russian Institute of Plant Protection , Russian Academy of Agricultural Sciences , Podbelskogo st., 3 , Pushkin , Saint-Petersburg 196608 , Russian Federation
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Chang C, Geng J, Du Y, Lv Q, Dong Z, Liu J. Divergent total synthesis of aspinolides B, E and J. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.06.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2016. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2017.09.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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