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Lei B, Jiang W, Ma J, Wang C, Pan Y, Zhang Z, Wang B, Guo J, Qi N. A recombinant L-threonine aldolase with high catalytic efficiency for the asymmetric synthesis of L-threo-phenylserine and L-threo-4-fluorophenylserine. Biotechnol Lett 2024; 47:11. [PMID: 39656280 DOI: 10.1007/s10529-024-03553-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Revised: 10/26/2024] [Accepted: 11/10/2024] [Indexed: 03/21/2025]
Abstract
OBJECTIVES To develop robust variants of L-threonine aldolases (L-TAs), potent catalysts for synthesizing asymmetric β-hydroxy-α-amino acids, it is necessary to identify critical residues beyond the known active site residues. RESULTS Through virtual screening, a neglected residue Asn305, was identified as critical for catalytic efficiency. Subsequent site-saturation mutagenesis led to a potent variant N305R which exhibited excellent conversions of 88%conv (87%de) and 80%conv (94%de) for the synthesis of L-threo-phenylserine and L-threo-4-fluorophenylserine respectively. This variant not only outperformed the template enzyme, but also represented a promising L-TA for synthesizing the two β-hydroxy-α-amino acids. It was suggested that Arg305 of the variant N305R generated strong cation-arene interaction and electrostatic force with the intermediates, leading to strengthened binding, enhanced L-threo favored orientation and wider entrance. CONCLUSIONS Our work not only provided an excellent variant N305R, but also suggested the crucial function of a neglected residue Asn305, which offered valuable experiences for other L-TA studies.
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Affiliation(s)
- Bijing Lei
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Wan Jiang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Jinsong Ma
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Caiyun Wang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Yinping Pan
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Zhi Zhang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China
| | - Bochu Wang
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China.
| | - Jian Guo
- School of Pharmaceutical Sciences, Chongqing University, Chongqing, 401331, China.
| | - Na Qi
- Key Laboratory of Biorheological Science and Technology (Chongqing University), Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400030, China.
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Da Silva Pinto S, Davies SG, Fletcher AM, Newton SK, Roberts PM, Thomson JE. Short asymmetric syntheses of sphinganine [(2S,3R)-2-aminooctadecane-1,3-diol] and its C(2)-epimer. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2020.152743] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Davies SG, Fletcher AM, Peters ME, Roberts PM, Thomson JE. The asymmetric synthesis of (S,S)-methylphenidate hydrochloride via ring-opening of an enantiopure aziridinium intermediate with phenylmagnesium bromide. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.130713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Phae-nok S, Pohmakotr M, Kuhakarn C, Reutrakul V, Soorukram D. Site-Specific Synthesis of β-Fluorinated γ-Butyrolactams via Decarboxylative Fluorination of β-Carboxyl-γ-Butyrolactams. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900685] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Supasorn Phae-nok
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC); Faculty of Science; Mahidol University; Rama VI Road 10400 Bangkok Thailand
| | - Manat Pohmakotr
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC); Faculty of Science; Mahidol University; Rama VI Road 10400 Bangkok Thailand
| | - Chutima Kuhakarn
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC); Faculty of Science; Mahidol University; Rama VI Road 10400 Bangkok Thailand
| | - Vichai Reutrakul
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC); Faculty of Science; Mahidol University; Rama VI Road 10400 Bangkok Thailand
| | - Darunee Soorukram
- Department of Chemistry and Center of Excellence for Innovation in Chemistry (PERCH-CIC); Faculty of Science; Mahidol University; Rama VI Road 10400 Bangkok Thailand
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Davies SG, Fletcher AM, Linsdall SM, Roberts PM, Thomson JE. Asymmetric Syntheses of (2R,3S)-3-Hydroxyproline and (2S,3S)-3-Hydroxyproline. Org Lett 2018; 20:4135-4139. [DOI: 10.1021/acs.orglett.8b01736] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Stephen G. Davies
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - Ai M. Fletcher
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - Sean M. Linsdall
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - Paul M. Roberts
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
| | - James E. Thomson
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, U.K
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