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Nazari N, Bernard S, Fortin D, Marmin T, Gendron L, Dory YL. Triple Thorpe-Ingold Effect in the Synthesis of 18-Membered C 3 Symmetric Lactams Stacking as Endless Supramolecular Tubes. Chemistry 2023; 29:e202203717. [PMID: 36469732 DOI: 10.1002/chem.202203717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 12/01/2022] [Accepted: 12/02/2022] [Indexed: 12/12/2022]
Abstract
Three C3 symmetric macrolactams were very efficiently cyclized from their linear precursors. Adequately located substituents are responsible for the enhancement of reactivity that is not observed in the unsubstituted parent. DFT calculations show that the properly folded cyclization precursor, the reactive conformer, is more populated than other conformers, leading to a decrease of free energy of activation. The crystal structure of the ring substituted with three very bulky esters indicates that tubular stacking is preserved.
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Affiliation(s)
- Niousha Nazari
- Laboratoire de Synthèse Supramoléculaire Département de Chimie, Université de Sherbrooke 2500, boulevard Université, Sherbrooke, Québec, J1K 2R1, Canada.,Institut de Pharmacologie et Centre de Recherche du CHUS, Université de Sherbrooke 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada
| | - Sylvain Bernard
- Laboratoire de Synthèse Supramoléculaire Département de Chimie, Université de Sherbrooke 2500, boulevard Université, Sherbrooke, Québec, J1K 2R1, Canada.,Institut de Pharmacologie et Centre de Recherche du CHUS, Université de Sherbrooke 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada
| | - Daniel Fortin
- Laboratoire de cristallographie, Université de Sherbrooke 2500, boulevard Université, Sherbrooke, Québec, J1K 2R1, Canada
| | - Thomas Marmin
- Laboratoire de Synthèse Supramoléculaire Département de Chimie, Université de Sherbrooke 2500, boulevard Université, Sherbrooke, Québec, J1K 2R1, Canada.,Institut de Pharmacologie et Centre de Recherche du CHUS, Université de Sherbrooke 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada
| | - Louis Gendron
- Département de Pharmacologie-Biophysique 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada.,Institut de Pharmacologie et Centre de Recherche du CHUS, Université de Sherbrooke 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada
| | - Yves L Dory
- Laboratoire de Synthèse Supramoléculaire Département de Chimie, Université de Sherbrooke 2500, boulevard Université, Sherbrooke, Québec, J1K 2R1, Canada.,Institut de Pharmacologie et Centre de Recherche du CHUS, Université de Sherbrooke 3001, 12e avenue nord, Sherbrooke, Québec, J1H 5N4, Canada
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Kato T, Kishimoto S, Asano A, Doi M. Crystal structure of N-{ N-[ N-( tert-but-oxy-carbon-yl)-l-α-aspart-yl]-l-α-aspart-yl}-l-α-aspartic acid 1 4,2 4,3 4-trimethyl ester 3 1-2-oxo-2-phenyl-ethyl ester {Boc-[Asp(OMe)] 3-OPac}. Acta Crystallogr E Crystallogr Commun 2019; 75:585-588. [PMID: 31110791 PMCID: PMC6505608 DOI: 10.1107/s2056989019004596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 04/04/2019] [Indexed: 11/10/2022]
Abstract
In the title homotripeptide {Boc-[Asp(OMe)]3-OPac}, C28H37N3O13, all peptide bonds adopt an s-trans conformation with respect to the N-H and C=O groups. In the crystal, N-H⋯O hydrogen bonds result in an infinite parallel β-sheet structure running along the b-axis direction. The Boc protecting group at the N-terminus of the peptide is disordered over two sites with occupancy factors of 0.504 (5) and 0.496 (5).
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Affiliation(s)
- Takuma Kato
- Osaka University of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Saki Kishimoto
- Osaka University of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Akiko Asano
- Osaka University of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
| | - Mitsunobu Doi
- Osaka University of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan
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