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Kunselman E, Minich JJ, Horwith M, Gilbert JA, Allen EE. Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound. Microbiol Spectr 2022;:e0198221. [PMID: 35536036 DOI: 10.1128/spectrum.01982-21] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
The Olympia oyster (Ostrea lurida) of the Puget Sound suffered a dramatic population crash, but restoration efforts hope to revive this native species. One overlooked variable in the process of assessing ecosystem health is association of bacteria with marine organisms and the environments they occupy. Oyster microbiomes are known to differ significantly between species, tissue type, and the habitat in which they are found. The goals of this study were to determine the impact of field site and habitat on the oyster microbiome and to identify core oyster-associated bacteria in the Puget Sound. Olympia oysters from one parental family were deployed at four sites in the Puget Sound both inside and outside of eelgrass (Zostera marina) beds. Using 16S rRNA gene amplicon sequencing of the oyster gut, shell, and surrounding seawater and sediment, we demonstrate that gut-associated bacteria are distinct from the surrounding environment and vary by field site. Furthermore, regional differences in the gut microbiota are associated with the survival rates of oysters at each site after 2 months of field exposure. However, habitat type had no influence on microbiome diversity. Further work is needed to identify the specific bacterial dynamics that are associated with oyster physiology and survival rates. IMPORTANCE This is the first exploration of the microbial colonizers of the Olympia oyster, a native oyster species to the West Coast, which is a focus of restoration efforts. The patterns of differential microbial colonization by location reveal microscale characteristics of potential restoration sites which are not typically considered. These microbial dynamics can provide a more holistic perspective on the factors that may influence oyster performance.
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Ramljak A, Vardić Smrzlić I, Kapetanović D, Barac F, Kolda A, Perić L, Balenović I, Gavrilović A. Skin Culturable Microbiota in Farmed European Seabass (Dicentrarchus labrax) in Two Aquacultures with and without Antibiotic Use. JMSE 2022; 10:303. [DOI: 10.3390/jmse10030303] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
This study examined culturable skin microbiota that was associated with farmed European seabass (Dicentrarchus labrax). Healthy European seabass were sampled during summer commercial harvest from one conventional fish farm where antibiotics are used, and from another practicing a certified antibiotic-free fish aquaculture. Physicochemical and microbiological analysis of seawater and sediment were performed, as well as determination of culturable bacteria, including Vibrio, from skin swabs of European seabass and seawater and sediment at both farms. Samples were processed for isolation of bacteria and their characterization by molecular and antibiotic susceptibility tests. In both fish farms, most of the bacteria that were identified in the skin belonged to the genera Pseudomonas and Vibrio. Some of the microbiota that were identified are known to be pathogenic to fish: V. alginolyticus, V. anguillarum, and V. harveyi. Vibrio strains showed higher resistance to certain antibiotics compared to previous studies. This study provides, for the first time, information on the culturable skin bacteria that is associated with healthy European seabass under culture conditions with and without the use of antibiotics. This information will be useful in assessing how changes in culturable microbiota may affect the health of farmed European seabass, indicating a potential problem for fish health management during disease outbreaks.
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Knobloch S, Philip J, Ferrari S, Benhaïm D, Bertrand M, Poirier I. The effect of ultrasonic antifouling control on the growth and microbiota of farmed European sea bass (Dicentrarchus labrax). Mar Pollut Bull 2021; 164:112072. [PMID: 33529875 DOI: 10.1016/j.marpolbul.2021.112072] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 01/14/2021] [Accepted: 01/16/2021] [Indexed: 05/11/2023]
Abstract
Biofouling is a serious threat to marine renewable energy structures and marine aquaculture operations alike. As an alternative to toxic surface coatings, ultrasonic antifouling control has been proposed as an environmentally friendly means to reduce biofouling. However, the impact of ultrasound on fish farmed in offshore structures or in marine multi-purpose platforms, combining renewable energy production and aquaculture, has not yet been assessed. Here we study the impact of ultrasound on the growth and microbiota of farmed European sea bass (Dicentrarchus labrax) under laboratory conditions. Whereas growth and survival were not reduced by ultrasound exposure, microbiological analysis using plate counts and 16S rRNA gene based metataxonomics showed a perturbation of the gill and skin microbiota, including an increase in putative pathogenic bacteria. This warrants further research into the long-term effects of ultrasonic antifouling control on the health and wellbeing of farmed fish.
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Affiliation(s)
- Stephen Knobloch
- Matís ohf., Microbiology Group, Vínlandsleid 12, 113 Reykjavík, Iceland
| | - Joris Philip
- Hólar University, Department of Aquaculture and Fish Biology, Háeyri 1, 550 Saudárkrókur, Iceland
| | - Sébastien Ferrari
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110 Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130 Cherbourg en Cotentin, France
| | - David Benhaïm
- Hólar University, Department of Aquaculture and Fish Biology, Háeyri 1, 550 Saudárkrókur, Iceland; Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110 Cherbourg en Cotentin, France
| | - Martine Bertrand
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110 Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130 Cherbourg en Cotentin, France
| | - Isabelle Poirier
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110 Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130 Cherbourg en Cotentin, France.
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Irgang R, Avendaño-Herrera R. Experimental tenacibaculosis infection in adult conger eel (Genypterus chilensis, Guichenot 1948) by immersion challenge with Tenacibaculum dicentrarchi. J Fish Dis 2021; 44:211-216. [PMID: 33064874 DOI: 10.1111/jfd.13282] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 09/29/2020] [Accepted: 09/30/2020] [Indexed: 06/11/2023]
Affiliation(s)
- Rute Irgang
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar, Chile
- Centro FONDAP, Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Universidad Andrés Bello, Valparaíso, Chile
| | - Ruben Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar, Chile
- Centro FONDAP, Interdisciplinary Center for Aquaculture Research (INCAR), Universidad Andrés Bello, Viña del Mar, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Universidad Andrés Bello, Valparaíso, Chile
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Lattos A, Giantsis IA, Karagiannis D, Theodorou JA, Michaelidis B. Gut Symbiotic Microbial Communities in the IUCN Critically Endangered Pinna nobilis Suffering from Mass Mortalities, Revealed by 16S rRNA Amplicon NGS. Pathogens 2020; 9:E1002. [PMID: 33260452 DOI: 10.3390/pathogens9121002] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 11/24/2020] [Accepted: 11/27/2020] [Indexed: 02/07/2023] Open
Abstract
Mass mortality events due to disease outbreaks have recently affected almost every healthy population of fan mussel, Pinna nobilis in Mediterranean Sea. The devastating mortality of the species has turned the interest of the research towards the causes of these events. After the haplosporidan infestation and the infection by Mycobacterium sp., new emerging pathogens have arisen based on the latest research. In the present study, a metagenomic approach of 16S rRNA next generation sequencing (NGS) was applied in order to assess the bacterial diversity within the digestive gland of diseased individuals as well as to carry out geographical correlations among the biodiversity of microbiome in the endangered species Pinna nobilis. The specimens originated from the mortalities occurred in 2019 in the region of Greece. Together with other bacterial genera, the results confirmed the presence of Vibrio spp., assuming synergistic effects in the mortality events of the species. Alongside with the presence of Vibrio spp., numerous bacterial genera were detected as well, including Aliivibrio spp., Photobacterium spp., Pseudoalteromonas spp., Psychrilyobacter spp. and Mycoplasma spp. Bacteria of the genus Mycoplasma were in high abundance particularly in the sample originated from Limnos island representing the first time recorded in Pinna nobilis. In conclusion, apart from exclusively the Haplosporidan and the Mycobacterium parasites, the presence of potentially pathogenic bacterial taxa detected, such as Vibrio spp., Photobactrium spp. and Alivibrio spp. lead us to assume that mortality events in the endangered Fan mussel, Pinna nobilis, may be attributed to synergistic effects of more pathogens.
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Ji Q, Wang S, Ma J, Liu Q. A review: Progress in the development of fish Vibrio spp. vaccines. Immunol Lett 2020; 226:46-54. [DOI: 10.1016/j.imlet.2020.07.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 06/28/2020] [Accepted: 07/08/2020] [Indexed: 12/16/2022]
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Benoist L, Houyvet B, Henry J, Corre E, Zanuttini B, Zatylny-Gaudin C. In-Depth In Silico Search for Cuttlefish ( Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes. Mar Drugs 2020; 18:md18090439. [PMID: 32847054 PMCID: PMC7551771 DOI: 10.3390/md18090439] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 08/15/2020] [Accepted: 08/19/2020] [Indexed: 12/25/2022] Open
Abstract
Cuttlefish (Sepia officinalis) haemocytes are potential sources of antimicrobial peptides (AMPs). To study the immune response to Vibrio splendidus and identify new AMPs, an original approach was developed based on a differential transcriptomic study and an in-depth in silico analysis using multiple tools. Two de novo transcriptomes were retrieved from cuttlefish haemocytes following challenge by V. splendidus or not. A first analysis of the annotated transcripts revealed the presence of Toll/NF-κB pathway members, including newly identified factors such as So-TLR-h, So-IKK-h and So-Rel/NF-κB-h. Out of the eight Toll/NF-κB pathway members, seven were found up-regulated following V. splendidus challenge. Besides, immune factors involved in the immune response were also identified and up-regulated. However, no AMP was identified based on annotation or conserved pattern searches. We therefore performed an in-depth in silico analysis of unannotated transcripts based on differential expression and sequence characteristics, using several tools available like PepTraq, a homemade software program. Finally, five AMP candidates were synthesized. Among them, NF19, AV19 and GK28 displayed antibacterial activity against Gram-negative bacteria. Each peptide had a different spectrum of activity, notably against Vibrio species. GK28—the most active peptide—was not haemolytic, whereas NF19 and AV19 were haemolytic at concentrations between 50 and 100 µM, 5 to 10 times higher than their minimum inhibitory concentration.
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Affiliation(s)
- Louis Benoist
- Normandy University, Unicaen, CNRS, BOREA, 14000 CAEN, France; (L.B.); (B.H.); (J.H.)
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Université de Caen-Normandie, MNHN, SU, UA, CNRS, IRD, Esplanade de la Paix, CEDEX, 14032 Caen, France
| | - Baptiste Houyvet
- Normandy University, Unicaen, CNRS, BOREA, 14000 CAEN, France; (L.B.); (B.H.); (J.H.)
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Université de Caen-Normandie, MNHN, SU, UA, CNRS, IRD, Esplanade de la Paix, CEDEX, 14032 Caen, France
- SATMAR, Société ATlantique de MARiculture, Research and Development Department, 50760 Gatteville, France
| | - Joël Henry
- Normandy University, Unicaen, CNRS, BOREA, 14000 CAEN, France; (L.B.); (B.H.); (J.H.)
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Université de Caen-Normandie, MNHN, SU, UA, CNRS, IRD, Esplanade de la Paix, CEDEX, 14032 Caen, France
| | - Erwan Corre
- Plateforme ABiMS, Station Biologique de Roscoff (CNRS-Sorbonne Université), 29688 Roscoff, France;
| | - Bruno Zanuttini
- Normandy University, Unicaen, Ensicaen, CNRS, GREYC, 14000 Caen, France;
| | - Céline Zatylny-Gaudin
- Normandy University, Unicaen, CNRS, BOREA, 14000 CAEN, France; (L.B.); (B.H.); (J.H.)
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Université de Caen-Normandie, MNHN, SU, UA, CNRS, IRD, Esplanade de la Paix, CEDEX, 14032 Caen, France
- Correspondence:
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Levican A, Fisher JC, McLellan SL, Avendaño-Herrera R. Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput Sequencing. Animals (Basel) 2020; 10:ani10061055. [PMID: 32570967 PMCID: PMC7341507 DOI: 10.3390/ani10061055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 06/15/2020] [Accepted: 06/15/2020] [Indexed: 12/19/2022] Open
Abstract
The red conger eel (Genypterus chilensis, Guichenot) is a native species included in the Chilean Aquaculture Diversification Program due to high commercial demand. In the context of intensified farming, prior reports link two disease outbreaks with emerging pathogens in the Vibrio and Tenacibaculum genera. However, the roles remain unclear for the bacterial community and each specific bacterium is associated with the rearing environment for healthy specimens. The success of red conger eel farming therefore warrants research into the bacterial composition of aquaculture conditions and the antimicrobial susceptibilities thereof. This study used culturing methods and high-throughput sequencing to describe the bacterial community associated with water in which G. chilensis was farmed. With culturing methods, the predominant genera were Vibrio (21.6%), Pseudolteromonas (15.7%), Aliivibrio (13.7%), and Shewanella (7.8%). Only a few bacterial isolates showed amylase, gelatinase, or lipase activity, and almost all showed inhibition zones to commonly-used antibiotics in aquaculture. By contrast, high-throughput sequencing established Paraperlucidibaca, Colwellia, Polaribacter, Saprospiraceae, and Tenacibaculum as the predominant genera, with Vibrio ranking twenty-seventh in abundance. High-throughput sequencing also established a link between previous outbreaks with increased relative abundances of Vibrio and Tenacibaculum. Therefore, monitoring the presence and abundance of these potential pathogens could be useful in providing prophylactic measures to prevent future outbreaks.
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Affiliation(s)
- Arturo Levican
- Tecnología Médica, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Avenida Universidad 330, Valparaíso 2373223, Chile
- Correspondence: or (A.L.); or (R.A.-H.)
| | - Jenny C. Fisher
- Biology Department, Indiana University Northwest, Gary, IN 46408, USA;
| | - Sandra L. McLellan
- School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI 53204, USA;
| | - Ruben Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Universidad Andrés Bello, Viña del Mar 2571015, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción 4030000, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Universidad Andrés Bello, Casablanca 2480000, Chile
- Correspondence: or (A.L.); or (R.A.-H.)
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Poirier I, Benhaïm D, Poizot E, Gallon RK, Cauvin E, Lemarchand A, Bertrand M, Lelièvre C, Murat A, Benoit F, Méar Y. Marine aggregates in North Atlantic coast: Microbial characteristics and potential interactions with farmed Atlantic salmon (Salmo salar). Mar Environ Res 2020; 157:104864. [PMID: 32275501 DOI: 10.1016/j.marenvres.2019.104864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 12/10/2019] [Accepted: 12/14/2019] [Indexed: 06/11/2023]
Abstract
Microbial contamination of aggregates collected near an Atlantic salmon farm, in the Cherbourg roadstead, was followed monthly over one year to study the dynamics of Vibrio spp. and explore their impact on farmed fish. Salmon state of health was followed through blood and histopathological analyses. Vibrio were systematically found in aggregates with particularly high concentration in August. The Splendidus clade was strongly dominant in aggregates as well as in gills, and an increase in Vibrio diversity was observed in summer and autumn. Results did not demonstrate that aggregates directly impact the bacterial community of gills, but they suggested an aggregates-gills interaction. Gill contamination was correlated with water temperature and probably impacted by amoebae. Vibrio renipiscarius and Vibrio toranzoniae were isolated in North Atlantic for the first time. A better understanding of the interaction between marine aggregates, Vibrio spp. and fish is essential to improve salmon cage farming.
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Affiliation(s)
- Isabelle Poirier
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - David Benhaïm
- Hólar University, Department of Aquaculture and Fish Biology, Háeyri 1, 550 Saudárkrókur, Iceland; Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Emmanuel Poizot
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Régis Kévin Gallon
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Elodie Cauvin
- LABÉO MANCHE, 1352 avenue de Paris, CS 33608, 50008, Saint-Lô, France.
| | - Alexis Lemarchand
- GMG, ZA Produimer, Rue Port des Flamands, 50110, Cherbourg en Cotentin, France.
| | - Martine Bertrand
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Céline Lelièvre
- Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Anne Murat
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
| | - Fabienne Benoit
- LABÉO MANCHE, 1352 avenue de Paris, CS 33608, 50008, Saint-Lô, France.
| | - Yann Méar
- Conservatoire National des Arts et Métiers, Institut National des Sciences et Techniques de la Mer, EPN8, Boulevard Collignon, Tourlaville, 50110, Cherbourg en Cotentin, France; Laboratoire Universitaire des Sciences Appliquées de Cherbourg, EA4253, Normandie Université, UNICAEN, 50130, Cherbourg en Cotentin, France.
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Hurtado L, Miranda CD, Rojas R, Godoy FA, Añazco MA, Romero J. Live Feeds Used in the Larval Culture of Red Cusk Eel, Genypterus chilensis, Carry High Levels of Antimicrobial-Resistant Bacteria and Antibiotic-Resistance Genes (ARGs). Animals (Basel) 2020; 10:ani10030505. [PMID: 32197370 PMCID: PMC7142716 DOI: 10.3390/ani10030505] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2020] [Revised: 02/29/2020] [Accepted: 03/10/2020] [Indexed: 11/27/2022] Open
Abstract
Simple Summary The culture of the marine fish red cusk eel Genypterus chilensis is currently considered a priority for Chilean aquaculture but low larval survival rates have prompted the need for the continuous use of antibiotics, mainly florfenicol. In this study, the role of live prey (rotifers and the brine shrimp Artemia franciscana) used to feed fish larvae as a source of antibacterial-resistant bacteria in a commercial culture of G. chilensis was investigated. Samples of live feeds were collected during the larval growth period and their bacterial contents were determined. High levels of potentially opportunistic pathogens, such as Vibrio spp., as well as florfenicol-resistant bacteria, were detected. Sixty-five florfenicol-resistant isolates were recovered from these cultures and identified as Vibrio (81.5%) and Pseudoalteromonas (15.4%), which exhibited a high incidence of co-resistance to the antibiotics streptomycin, oxytetracycline, co-trimoxazole, and kanamycin. The majority of them carried the florfenicol-resistance encoding genes floR and fexA. The high prevalence of antibiotic-resistant bacteria and the associated genetic elements in live feed administered to reared fish larvae requires the prompt implementation of efficient management strategies to prevent future therapy failures in fish larval cultures and the spread of antibiotic-resistant bacteria to associated aquatic environments. Abstract The culture of red cusk eel Genypterus chilensis is currently considered a priority for Chilean aquaculture but low larval survival rates have prompted the need for the continuous use of antibacterials. The main aim of this study was to evaluate the role of live feed as a source of antibacterial-resistant bacteria in a commercial culture of G. chilensis. Samples of rotifer and Artemia cultures used as live feed were collected during the larval growth period and culturable bacterial counts were performed using a spread plate method. Rotifer and Artemia cultures exhibited high levels of resistant bacteria (8.03 × 104 to 1.79 × 107 CFU/g and 1.47 × 106 to 3.50 × 108 CFU/g, respectively). Sixty-five florfenicol-resistant isolates were identified as Vibrio (81.5%) and Pseudoalteromonas (15.4%) using 16S rRNA gene sequence analysis. A high incidence of resistance to streptomycin (93.8%), oxytetracycline (89.2%), co-trimoxazole (84.6%), and kanamycin (73.8%) was exhibited by resistant isolates. A high proportion of isolates (76.9%) carried the florfenicol-resistance encoding genes floR and fexA, as well as plasmid DNA (75.0%). The high prevalence of multiresistant bacteria in live feed increases the incidence of the resistant microbiota in reared fish larvae, thus proper monitoring and management strategies for live feed cultures appear to be a priority for preventing future therapy failures in fish larval cultures.
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Affiliation(s)
- Luz Hurtado
- Programa Cooperativo de Doctorado en Acuicultura, Departamento de Acuicultura, Universidad Católica del Norte, Coquimbo 1780000, Chile;
| | - Claudio D. Miranda
- Laboratorio de Patobiología Acuática, Departamento de Acuicultura, Universidad Católica del Norte, Coquimbo 1780000, Chile;
- Centro AquaPacífico, Universidad Católica del Norte, Coquimbo 1780000, Chile
- Correspondence: ; Tel.: +56-512209762
| | - Rodrigo Rojas
- Laboratorio de Patobiología Acuática, Departamento de Acuicultura, Universidad Católica del Norte, Coquimbo 1780000, Chile;
- Centro AquaPacífico, Universidad Católica del Norte, Coquimbo 1780000, Chile
| | - Félix A. Godoy
- Centro i~mar, Universidad de Los Lagos, Puerto Montt 5480000, Chile; (F.A.G.); (M.A.A.)
| | - Mark A. Añazco
- Centro i~mar, Universidad de Los Lagos, Puerto Montt 5480000, Chile; (F.A.G.); (M.A.A.)
| | - Jaime Romero
- Laboratorio de Biotecnología, Instituto de Nutrición y Tecnología de los Alimentos (INTA), Universidad de Chile, Macul, Santiago 7810000, Chile;
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Schuh NW, Carrier TJ, Schrankel CS, Reitzel AM, Heyland A, Rast JP. Bacterial Exposure Mediates Developmental Plasticity and Resistance to Lethal Vibrio lentus Infection in Purple Sea Urchin (Strongylocentrotus purpuratus) Larvae. Front Immunol 2020; 10:3014. [PMID: 31993052 PMCID: PMC6971090 DOI: 10.3389/fimmu.2019.03014] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 12/09/2019] [Indexed: 12/27/2022] Open
Abstract
Exposure to and colonization by bacteria during development have wide-ranging beneficial effects on animal biology but can also inhibit growth or cause disease. The immune system is the prime mediator of these microbial interactions and is itself shaped by them. Studies using diverse animal taxa have begun to elucidate the mechanisms underlying the acquisition and transmission of bacterial symbionts and their interactions with developing immune systems. Moreover, the contexts of these associations are often confounded by stark differences between "wild type" microbiota and the bacterial communities associated with animals raised in conventional or germ-free laboratories. In this study, we investigate the spatio-temporal kinetics of bacterial colonization and associated effects on growth and immune function in larvae of the purple sea urchin (Strongylocentrotus purpuratus) as a model for host-microbe interactions and immune system development. We also compare the host-associated microbiota of developing embryos and larvae raised in natural seawater or exposed to adult-associated bacteria in the laboratory. Bacteria associated with zygotes, embryos, and early larvae are detectable with 16S amplicon sequencing, but 16S-FISH indicates that the vast majority of larval bacterial load is acquired after feeding begins and is localized to the gut lumen. The bacterial communities of laboratory-cultured embryos are significantly less diverse than the natural microbiota but recapitulate its major components (Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes), suggesting that biologically relevant host-microbe interactions can be studied in the laboratory. We also demonstrate that bacterial exposure in early development induces changes in morphology and in the immune system. In the absence of bacteria, larvae grow larger at the 4-arm stage. Additionally, bacteria-exposed larvae are significantly more resistant to lethal infection with the larva-associated pathogen Vibrio lentus suggesting that early exposure to high levels of microbes, as would be expected in natural conditions, affects the immune state in later larvae. These results expand our knowledge of microbial influences on early sea urchin development and establish a model in which to study the interactions between the developing larval immune system and the acquisition of larval microbiota.
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Affiliation(s)
- Nicholas W Schuh
- Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.,Department of Biological Sciences, Sunnybrook Research Institute, Toronto, ON, Canada.,Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - Tyler J Carrier
- Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, United States
| | - Catherine S Schrankel
- Department of Biological Sciences, Sunnybrook Research Institute, Toronto, ON, Canada.,Department of Immunology, University of Toronto, Toronto, ON, Canada.,Marine Biology Research Division, Scripps Institute of Oceanography, University of California, San Diego, San Diego, CA, United States
| | - Adam M Reitzel
- Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC, United States
| | - Andreas Heyland
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - Jonathan P Rast
- Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.,Department of Biological Sciences, Sunnybrook Research Institute, Toronto, ON, Canada.,Department of Immunology, University of Toronto, Toronto, ON, Canada.,Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, United States.,Emory Vaccine Center, Emory University, Atlanta, GA, United States
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12
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Irgang R, González-Luna R, Gutiérrez J, Poblete-Morales M, Rojas V, Tapia-Cammas D, Avendaño-Herrera R. First identification and characterization of Tenacibaculum dicentrarchi isolated from Chilean red conger eel (Genypterus chilensis, Guichenot 1848). J Fish Dis 2017; 40:1915-1920. [PMID: 28548691 DOI: 10.1111/jfd.12643] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Revised: 03/06/2017] [Accepted: 03/07/2017] [Indexed: 06/07/2023]
Affiliation(s)
- R Irgang
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
| | - R González-Luna
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Escuela de Tecnología Médica, Facultad de Medicina, Universidad Andrés Bello, Viña del Mar, Chile
| | - J Gutiérrez
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Escuela de Tecnología Médica, Facultad de Medicina, Universidad Andrés Bello, Viña del Mar, Chile
| | - M Poblete-Morales
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
| | - V Rojas
- Laboratorio de Genética e Inmunología Molecular, Instituto de Biología, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
| | - D Tapia-Cammas
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
| | - R Avendaño-Herrera
- Universidad Andres Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Valparaíso, Chile
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13
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Levican A, Lasa A, Irgang R, Romalde JL, Poblete-Morales M, Avendaño-Herrera R. Isolation of Vibrio tapetis from two native fish species (Genypterus chilensis and Paralichthys adspersus) reared in Chile and description of Vibrio tapetis subsp. quintayensis subsp. nov. Int J Syst Evol Microbiol 2017; 67:716-723. [DOI: 10.1099/ijsem.0.001705] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Affiliation(s)
- Arturo Levican
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Universidad Andrés Bello, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
- Escuela de Tecnología Médica, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
| | - Aide Lasa
- Departamento de Microbiología y Parasitología, CIBUS-Facultad de Biología, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
| | - Rute Irgang
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Universidad Andrés Bello, Viña del Mar, Chile
| | - Jesús L Romalde
- Departamento de Microbiología y Parasitología, CIBUS-Facultad de Biología, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
| | - Matías Poblete-Morales
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Universidad Andrés Bello, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
| | - Ruben Avendaño-Herrera
- Centro de Investigación Marina Quintay (CIMARQ), Universidad Andres Bello, Valparaíso, Chile
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Universidad Andrés Bello, Viña del Mar, Chile
- Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
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14
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Lasa A, Gibas CJ, Romalde JL. Comparative Genomic Analysis of Two Vibrio toranzoniae Strains with Different Virulence Capacity Reveals Clues on Its Pathogenicity for Fish. Front Microbiol 2017; 8:86. [PMID: 28194141 PMCID: PMC5277001 DOI: 10.3389/fmicb.2017.00086] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 01/12/2017] [Indexed: 11/30/2022] Open
Abstract
Vibrio toranzoniae is a Gram-negative bacterium of the Splendidus clade within the Vibrio genus. V. toranzoniae was first isolated from healthy clams in Galicia (Spain) but recently was also identified associated to disease outbreaks of red conger eel in Chile. Experimental challenges showed that the Chilean isolates were able to produce fish mortalities but not the strains isolated from clams. The aim of the present study was to determine the differences at the genomic level between the type strain of the species (CECT 7225T) and the strain R17, isolated from red conger eel in Chile, which could explain their different virulent capacity. The genome-based comparison showed high homology between both strains but differences were observed in certain gene clusters that include some virulence factors. Among these, we found that iron acquisition systems and capsule synthesis genes were the main differential features between both genomes that could explain the differences in the pathogenicity of the strains. Besides, the studied genomes presented genomic islands and toxins, and the R17 strain presented CRISPR sequences that are absent on the type strain. Taken together, this analysis provided important insights into virulence factors of V. toranzoniae that will lead to a better understanding of the pathogenic process.
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Affiliation(s)
- Aide Lasa
- Departamento de Microbiología y Parasitología, CIBUS-Facultad de Biología, Universidade de Santiago de Compostela Santiago de Compostela, Spain
| | - Cynthia J Gibas
- Department of Bioinformatics and Genomics, The University of North Carolina at Charlotte Charlotte, NC, USA
| | - Jesús L Romalde
- Departamento de Microbiología y Parasitología, CIBUS-Facultad de Biología, Universidade de Santiago de Compostela Santiago de Compostela, Spain
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15
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Pérez-Cataluña A, Lucena T, Tarazona E, Arahal DR, Macián MC, Pujalte MJ. An MLSA approach for the taxonomic update of the Splendidus clade, a lineage containing several fish and shellfish pathogenic Vibrio spp. Syst Appl Microbiol 2016; 39:361-9. [DOI: 10.1016/j.syapm.2016.03.010] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Revised: 03/22/2016] [Accepted: 03/30/2016] [Indexed: 11/29/2022]
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16
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Abstract
Vibrio toranzoniae (CECT 7225T) was isolated from healthy reared carpet shell clams in Galicia (Northwest Spain). In addition, this species has been recently identified as a potential pathogen of red conger eel in Chile. The draft genome sequence has 4.5 Mbp, a G+C content of 43.9%, and >3,800 protein-coding genes.
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