Modelling the population dynamics and metabolic diversity of organisms relevant in anaerobic/anoxic/aerobic enhanced biological phosphorus removal processes

Elucidating the factors that impact the abundance of aerobic and denitrifying polyphosphate-accumulating organisms in an integrated fixed film activated sludge-enhanced biological phosphorus removal process

The integrated fixed-film activated sludge (IFAS)-enhanced biological phosphorus removal (EBPR) (IFAS-EBPR) system is significant for its ability to enhance nitrification and phosphorus removal by leveraging fixed-film carriers for nitrifiers and suspended growth for heterotrophs, but limited understanding of microbial dynamics and variable performance continues to drive interest in optimizing its application. This study investigated the key factors that affect the distribution and abundance of denitrifying (DPAOs) and non-denitrifying types of Accumulibacter-like polyphosphate-accumulating organisms (non-DPAOs) in a lab-scale continuous-flow IFAS-EBPR. The increase of nitrate recycles ratios from 1.0, 1.5, to 2.5Q affected both nitrogen (N) removal efficiency and EBPR activities, with P removal profile transitioning from having continuous P release to P uptake in anoxic zone. Population abundance analysis revealed that Clade I Accumulibacter (preconceived DPAO-Accumulibacter clade) correlated positively with the nitrate recycle flows (r = 0.96) and anoxic residual nitrate concentration (r = 0.99), while Clade II Accumulibacter (non-DPAO clade) showed negative correlation (r = -0.93), indicating the response of DPAO to the operational condition, particularly the nitrate recycle ratio, in our system. Furthermore, the relative abundance of DPAOs correlated  negatively with the anoxic residual biodegradable COD (r = -0.99), anoxic hydraulic retention time (HRT) (r = -0.99), and nitrate and nitrite levels in the anoxic zone (r = -0.95, -0.99). SUMO model simulations revealed DPAO denitrification rates of 8.2, 7.8, and 4.1 gN/m3/d from 1.0, 1.5, to 2.5Q, accounting for only 5.8%, 9.5%, and 4.0% of nitrate removal in the anoxic zone, respectively. This study demonstrates that DPAO and non-DPAO populations are dynamically affected by operating conditions in a continuous-flow EBPR system, and the actual contribution of DPAO to the overall denitrification is relatively small (<10%). This study contributed to our better understanding of DPAO population dynamics and providing insights for optimizing DPAO in a EBPR processes for more sustainable wastewater treatment. PRACTITIONER POINTS: Accumulibacter-like DPAO subgroups and non-DPAOs coexist in IFAS-EBPR systems, with abundances controlled by nitrate recycle flows. DPAOs contribute <10% to overall denitrification, but their enrichment significantly impacts carbon reduction in EBPR processes. Optimizing nitrate recycle ratio (around 1.5) balances nitrate recycling and oxygen inhibition, enhancing DPAO performance in wastewater treatment. Understanding DPAO subpopulation dynamics is crucial for designing efficient BNR systems with reduced external carbon requirements.

Solids retention time modulates nutrient removal in pilot-scale anaerobic-aerobic-anoxic process: Carbon allocation patterns and microbial insights

Anaerobic-aerobic-anoxic (AOA) process is a promising configuration to retrofit current wastewater treatment plants with intensified carbon utilization and nutrient removal, but lacks process optimization for scaling-up in real wastewater scenarios. Solids retention time (SRT) is a fundamental parameter of activated sludge process, but its roles in the AOA process remain vague. Here, we established a pilot-scale AOA process at different SRTs (10, 20, 30 d) to investigate the comprehensive responses and potential mechanisms. The results revealed that proper SRT extension in S20 (20 d) achieved the highest nutrient removal via enhanced nitrification, denitrification, denitrifying phosphate removal (DPR), and expanded phosphorus reservoir. Simultaneously, S20 garnered the optimized carbon conservation and allocation via efficient intracellular carbon transformation, consolidating energy foundation for nutrient removal. In contrast, excessive SRT in S30 (30 d) escalated cellular expenditure for maintenance, stimulated sludge decay with starvation stresses, triggered passive ammonia/phosphate release, and ultimately deteriorated carbon allocation and nutrient removal. Furthermore, microbial insights demonstrated that S20 has tailored habitats for autotrophic nitrifiers, and specialized denitrifying phosphate accumulating organisms (Dechloromonas) and denitrifying glycogen accumulating organisms (Thauera) featuring high carbon priority, favoring nutrient removal; while S30 accelerated exclusion of functional guilds, propagated surplus generalized ordinary heterotrophic and fermentative organisms (Saccharimonadales, Ferruginibacter, Tetrasphaera), impairing the microbial functionality. Functional analysis further corroborated the enhanced nutrient metabolism in S20, and the exacerbated sludge decay and activity attenuation in S30. These findings can advance our understanding of the interactions between SRT and C-N-P cycles in the AOA process, and underscore its significance in practical application.

Higher order volatile fatty acid metabolism and atypical polyhydroxyalkanoate production in fermentation-enhanced biological phosphorus removal

Enhanced biological phosphorus removal (EBPR) is an established wastewater treatment process, but its wider implementation has been limited by factors like high temperature and low carbon availability. Fermentation-enhanced EBPR (F-EBPR) processes have shown promise in addressing these limitations, but the underlying mechanisms are not fully understood. This study investigates the metabolism of higher order (C4-5) volatile fatty acids (VFAs) in F-EBPR systems using a combination of carbon isotope labelling and shotgun metagenomic sequencing analyses. Results show that butyrate (HBu) uptake leads to the formation of both typical (C4-5) and atypical (C6+) polyhydroxyalkanoates (PHAs) through a combination ofβ-oxidation and standard condensation pathways, while the putative role of HBu oxidisers were identified relative to substrate composition in F-EBPR processes. Metagenomic analysis reveals the presence of genes required for higher order VFA metabolism in both polyphosphate accumulating organisms (PAOs) and glycogen accumulating organisms (GAOs). This study also highlights the limitations of current models in describing F-EBPR processes and emphasises the need for improved models that account for higher order VFA metabolism and microbial community dynamics.

Biochar coupled with multiple technologies for the removal of nitrogen and phosphorus from water: A review

Water eutrophication caused by nitrogen (N) and phosphorus (P) has become a global environmental issue. Biochar is a competent adsorbent for removing N and P from wastewater. However, compared with commercial activated carbon, biochar has relatively limited adsorption capacity. To broaden the field scale application of biochar, biochar coupled with multiple technologies (BC-MTs) (such as microorganisms, electrochemistry, biofilm, phytoremediation, etc.) have been extensively developed for environmental remediation. Nevertheless, due to the fluctuations and differences in biochar types, coupling methods, and wastewater types, various techniques show different removal mechanisms and performance, hindering the promotion and application of BC-MTs. A systematic review of the research progress of BC-MTs is highly necessary to gain a better understanding of the current research status and progress, as well as to promote the application of these techniques. In this paper, the application of pristine and modified biochar in adsorbing N and P in wastewater is critically reviewed. Then the removal performance, influencing factors, mechanisms, and the environmental applications of BC-MTs in wastewater are systematically summarized. In addition, the cost analysis and risk assessment of BC-MTs in environmental applications are conducted. Finally, suggestions and prospects for future research and practical application are put forward.

The impact of pH on the anaerobic and aerobic metabolism of Tetrasphaera-enriched polyphosphate accumulating organisms

Members of the genus Tetrasphaera are putative polyphosphate accumulating organisms (PAOs) that have been found in greater abundance than Accumulibacter in many full-scale enhanced biological phosphorus removal (EBPR) wastewater treatment plants worldwide. Nevertheless, previous studies on the effect of environmental conditions, such as pH, on the performance of EBPR have focused mainly on the response of Accumulibacter to pH changes. This study examines the impact of pH on a Tetrasphaera PAO enriched culture, over a pH range from 6.0 to 8.0 under both anaerobic and aerobic conditions, to assess its impact on the stoichiometry and kinetics of Tetrasphaera metabolism. It was discovered that the rates of phosphorus (P) uptake and P release increased with an increase of pH within the tested range, while PHA production, glycogen consumption and substrate uptake rate were less sensitive to pH changes. The results suggest that Tetrasphaera PAOs display kinetic advantages at high pH levels, which is consistent with what has been observed previously for Accumulibacter PAOs. The results of this study show that pH has a substantial impact on the P release and uptake kinetics of PAOs, where the P release rate was >3 times higher and the P uptake rate was >2 times higher at pH 8.0 vs pH 6.0, respectively. Process operational strategies promoting both Tetrasphaera and Accumulibacter activity at high pH do not conflict with each other, but lead to a potentially synergistic impact that can benefit EBPR performance.

Advanced simultaneous nitrogen and phosphorus removal for non-sterile wastewater through a novel coupled yeast-sludge system: Performance, microbial interaction, and mechanism

A novel coupled yeast-sludge system (CYSS) was constructed by the yeast Candida sp. PNY integrated with activated sludge to treat non-sterile mainstream wastewater. After 240-day cultivation, compared with single activated sludge, simultaneous removal efficiency of total organic carbon (TOC), nitrogen and phosphorus increased by 19.5% (176.34 mg TOC g^-1 d^-1), 21.3% (11.25 mg TN g^-1 d^-1) and 15.0% (6.95 mg TP g^-1 d^-1), respectively, while the amount of sludge reduced by 50%. Amplicon sequencing analysis showed that the abundance of Nitrosomonas, Nitrospira, Zoogloea, Dechloromonas, and Candidatus Accumulibacter significantly decreased to 0% on Day 200. Abundance of nirS and nirK for denitrification significantly decreased in CYSS by quantitative PCR (qPCR), and the copies of nirS and nirK were 3.37-fold and 1.71-fold decrease from Day 0 to Day 240, respectively. The results of Fluorescence in situ hybridization and co-occurrence network showed that Candida sp. PNY predominated its distribution in CYSS, and strongly connected with environmental variables based on network analysis. Furthermore, this study reconstructed the carbon, nitrogen and phosphorus metabolic pathways of the CYSS based on metagenomics.

The phylogeny, ecology and ecophysiology of the glycogen accumulating organism (GAO) Defluviicoccus in wastewater treatment plants

This comprehensive review looks critically what is known about members of the genus Defluviicoccus, an example of a glycogen accumulating organism (GAO), in wastewater treatment plants, but found also in other habitats. It considers the operating conditions thought to affect its performance in activated sludge plants designed to remove phosphorus microbiologically, including the still controversial view that it competes with the polyphosphate accumulating bacterium Ca. Accumulibacter for readily biodegradable substrates in the anaerobic zone receiving the influent raw sewage. It looks at its present phylogeny and what is known about it's physiology and biochemistry under the highly selective conditions of these plants, where the biomass is recycled continuously through alternative anaerobic (feed); aerobic (famine) conditions encountered there. The impact of whole genome sequence data, which have revealed considerable intra- and interclade genotypic diversity, on our understanding of its in situ behaviour is also addressed. Particular attention is paid to the problems in much of the literature data based on clone library and next generation DNA sequencing data, where Defluviicoccus identification is restricted to genus level only. Equally problematic, in many publications no attempt has been made to distinguish between Defluviicoccus and the other known GAO, especially Ca. Competibacter, which, as shown here, has a very different ecophysiology. The impact this has had and continues to have on our understanding of members of this genus is discussed, as is the present controversy over its taxonomy. It also suggests where research should be directed to answer some of the important research questions raised in this review.

Abundance and Niche Differentiation of Comammox in the Sludges of Wastewater Treatment Plants That Use the Anaerobic-Anoxic-Aerobic Process

Complete ammonia oxidizers (comammox), which directly oxidize ammonia to nitrate, were recently identified and found to be ubiquitous in artificial systems. Research on the abundance and niche differentiation of comammox in the sludges of wastewater treatment plants (WWTPs) would be useful for improving the nitrogen removal efficiency of WWTPs. Here, we investigated the relative abundance and diversity of comammox in fifteen sludges of five WWTPs that use the anaerobic−anoxic−aerobic process in Jinan, China, via quantitative polymerase chain reaction and high-throughput sequencing of the 16S rRNA gene and ammonia monooxygenase gene. In the activated sludges in the WWTPs, comammox clade A.1 was widely distributed and mostly comprised Candidatus Nitrospira nitrosa-like comammox (>98% of all comammox). The proportion of this clade was negatively correlated (p < 0.01) with the dissolved oxygen (DO) level (1.7−8 mg/L), and slight pH changes (7.20−7.70) affected the structure of the comammox populations. Nitrospira lineage I frequently coexisted with Nitrosomonas, which generally had a significant positive correlation (p < 0.05) with the DO level. Our study provided an insight into the structure of comammox and other nitrifier populations in WWTPs that use the anaerobic−anoxic−aerobic process, broadening the knowledge about the effects of DO on comammox and other nitrifiers.

Bioaugmentation for low C/N ratio wastewater treatment by combining endogenous partial denitrification (EPD) and denitrifying phosphorous removal (DPR) in the continuous A2/O - MBBR system

Endogenous partial denitrification (EPD) and denitrifying phosphorous removal (DPR) were combined in a novel A²/O - MBBR (Anaerobic Anoxic Oxic - Moving Bed Biofilm Reactor) system for low carbon/nitrogen (C/N) ratio wastewater treatment. The DPR performance was compared and the nutrient metabolism was elucidated based on the optimization of hydraulic retention time (HRT, 4-12 h) and nitrate recycling (R, 200%-600%). In the continuous-flow, the nitrate (NO₃^-) denitrification accompanied by nitrite (NO₂^-, via EPD) accumulation with the nitrate-to-nitrite transformation ratio (NTR) of 35.87%-43.31% in the anoxic zones. At HRT of 12 h with R of 500%, batch test initially revealed the DPR mechanism using both NO₃^- and NO₂^- as electron acceptor, where denitrifying phosphorus accumulation organisms (DPAOs) and denitrifying glycogen accumulation organisms (DGAOs) were the main contributors for EPD with incomplete denitrification (NO₃^- → NO₂^-). Furthermore, stoichiometry-based functional bacteria analysis displayed that higher bioactivity of DPAOs (NO₂^-→N₂, 57.30%; NO₃^-→N₂, 35.85%) over DGAOs (NO₃^-→N₂, 6.85%) facilitated the anoxic NO₃^- reduction. Microbial community analysis suggested that Cluster I of Defluviicoccus-GAO group (∼4%) was responsible for stable NO₂^- accumulation performance via EPD, while increased Accumulibacter-PAO group (by ∼15%) contributed to the advanced nutrient removal. Based on the achievement of NO₂^- accumulation, the application feasibility of integrated EPD - DPR - Anammox for deep-level nutrient removal was discussed.

Combined effects of volume ratio and nitrate recycling ratio on nutrient removal, sludge characteristic and microbial evolution for DPR optimization

The optimization of volume ratio (V_An/V_A/V_O) and nitrate recycling ratio (R) in a two-sludge denitrifying phosphorus removal (DPR) process of Anaerobic Anoxic Oxic-Moving Bed Biofilm Reactor (A²/O-MBBR) was investigated. The results showed that prolonged anaerobic retention time (HRT_An: 1.25→3.75 hr) exerted favorable effect on chemical oxygen demand (COD) removal (57.26%→73.54%), poly-β-hydroxyalkanoates (PHA) synthesis (105.70→138.12 mgCOD/L) and PO₄^3- release (22.3→38.9 mg/L). However, anoxic retention time (HRT_A) and R exhibited positive correlation with PHA utilization (43.87%-81.34%) and denitrifying phosphorus removal (DPR) potential (ΔNO₃^-/ΔPO₄^3-: 0.57-1.34 mg/mg), leading to dramatical TN removal variations from 68.86% to 81.28%. Under the V_An/V_A/V_O ratio of 2:6:0, sludge loss deteriorated nutrient removals but the sludge bioactivity quickly recovered when the oxic zone was recovered. The sludge characteristic and microstructure gradually transformed under the dissolved oxygen (DO) control (1.0-1.5→1.5-2.0 mg/L), in terms of sludge volume index (SVI: 194→57 mL/gVSS), median-particle-size (D₅₀: 99.6→300.5 μm), extracellular polymeric substances (EPS) (105.62→226.18 mg/g VSS) and proteins/polysaccharides (PN/PS) ratio (1.52→3.46). Fluorescence in situ hybridization (FISH) results showed that phosphorus accumulation organisms (PAOs) (mainly Cluster I of Accumulibacter, contribution ratio: 91.79%-94.10%) dominated the superior DPR performance, while glycogen accumulating organisms (GAOs) (mainly Competibacter, contribution ratio: 82.61%-86.89%) was responsible for deteriorative TN and PO₄^3- removals. The optimal HRT_A and R assembled around 5-6.5 hr and 300%-400% based on the PHA utilization and DRP performance, and the oxic zones also contributed to PO₄^3- removal although it showed low dependence on DO concentration and oxic retention time (HRT_O).

Research on the enhanced biological nitrogen removal of wastewater by the ultrasound-hydrolysis acidification of excess sludge

To simultaneously improve the removal of nitrogen and phosphorus from wastewater with a low C/N ratio and reduce excess sludge production, in this paper, excess sludge ultrasound-hydrolysis acidification (UHA) pretreatment was coupled with the anaerobic-anoxic-oxic (AAO) process to provide carbon source and enhance biological nitrogen removal performance, and the experimental results can be summarized as follows. First, the total nitrogen (TN) concentrations in the effluent of the system decreased from 16.94 mg/L to 5.74 mg/L, and the removal rate of TN increased by 25.5%. In addition, the concentrations for ammonia nitrogen (NH₃ -N) in the system decreased 12.59 mg/L, and the removal rate of this index increased by 29.0%. Furthermore, the specific oxygen uptake rate (SOUR) in the anoxic zone increased significantly because the application of UHA products enhanced the microbial activity, and the addition of UHA products had an effect on the microbial community structure in the system. The amounts of denitrifying bacteria such as Betaproteobacteria and Alphaproteobacteria also increased, which enhanced the nitrogen removal efficiency of wastewater biological treatment. PRACTITIONER POINTS: Treatment of excess sludge in UHA device as an additional carbon source. Nitrogen removal efficiency was greatly improved after adding UHA products. Input of UHA products enhanced microbial activity in AAO system. Denitrifying bacteria increased with the addition of UHA products.

Production of nonulosonic acids in the extracellular polymeric substances of "Candidatus Accumulibacter phosphatis"

Nonulosonic acids (NulOs) are a family of acidic carbohydrates with a nine-carbon backbone, which include different related structures, such as sialic acids. They have mainly been studied for their relevance in animal cells and pathogenic bacteria. Recently, sialic acids have been discovered as an important compound in the extracellular matrix of virtually all microbial life and in "Candidatus Accumulibacter phosphatis", a well-studied polyphosphate-accumulating organism, in particular. Here, bioaggregates highly enriched with these bacteria (approx. 95% based on proteomic data) were used to study the production of NulOs in an enrichment of this microorganism. Fluorescence lectin-binding analysis, enzymatic quantification, and mass spectrometry were used to analyze the different NulOs present, showing a wide distribution and variety of these carbohydrates, such as sialic acids and bacterial NulOs, in the bioaggregates. Phylogenetic analysis confirmed the potential of "Ca. Accumulibacter" to produce different types of NulOs. Proteomic analysis showed the ability of "Ca. Accumulibacter" to reutilize and reincorporate these carbohydrates. This investigation points out the importance of diverse NulOs in non-pathogenic bacteria, which are normally overlooked. Sialic acids and other NulOs should be further investigated for their role in the ecology of "Ca. Accumulibacter" in particular, and biofilms in general. KEY POINTS: •"Ca. Accumulibacter" has the potential to produce a range of nonulosonic acids. •Mass spectrometry and lectin binding can reveal the presence and location of nonulosonic acids. •The role of nonulosonic acid in non-pathogenic bacteria needs to be studied in detail.

Denitrification kinetics indicates nitrous oxide uptake is unaffected by electron competition in Accumulibacter

Denitrifying phosphorus removal is a cost and energy efficient treatment technology that relies on polyphosphate accumulating organisms (DPAOs) utilizing nitrate or nitrite as terminal electron acceptor. Denitrification is a multistep process, but many organisms do not possess the complete pathway, leading to the accumulation of intermediates such as nitrous oxide (N₂O), a potent greenhouse gas and ozone depleting substance. Candidatus Accumulibacter organisms are prevalent in denitrifying phosphorus removal processes and, according to genomic analyses, appear to vary in their denitrification abilities based on their lineage. Denitrification kinetics and nitrous oxide accumulation in the absence of inhibition from free nitrous acid is a strong indicator of denitrification capabilities of Accumulibacter exposed long-term to nitrate or nitrite as electron acceptor. Thus, we investigated the preferential use of the nitrogen oxides involved in denitrification and nitrous oxide accumulation in two enrichments of Accumulibacter and a competitor - the glycogen accumulating organism Candidatus Competibacter. We modified a metabolic model to predict phosphorus removal and denitrification rates when nitrate, nitrite or N₂O were added as electron acceptors in different combinations. Unlike previous studies, no N₂O accumulation was observed for Accumulibacter in the presence of multiple electron acceptors. Electron competition did not limit denitrification kinetics or lead to N₂O accumulation in Accumulibacter or Competibacter. Despite the presence of sufficient internal storage polymers (polyhydroxyalkanoates, or PHA) as energy source for each denitrification step, the extent of denitrification observed was dependent on the dominant organism in the enrichment. Accumulibacter showed complete denitrification, whereas Competibacter denitrification was limited to reduction of nitrate to nitrite. These findings indicate that DPAOs can contribute to lowering N₂O emissions in the presence of multiple electron acceptors under partial nitritation conditions.

Effects of heavy metals and metal (oxide) nanoparticles on enhanced biological phosphorus removal

With the rapid growth of economics and nanotechnology, a significant portion of the anthropogenic emissions of heavy metals and nanoparticles (NPs) enters wastewater streams and discharges to wastewater treatment plants, thereby potentially posing a risk to the bacteria that facilitate the successful operation of the enhanced biological phosphorus (P) removal (EBPR) process. Although some efforts have been made to obtain detailed insights into the effects of heavy metals and metal (oxide) nanoparticles [Me(O)NPs], many unanswered questions remain. One question is whether the toxicity of Me(O)NPs originates from the released metal ions. This review aims to holistically evaluate the effects of heavy metals and Me(O)NPs. The interactions among extracellular polymeric substances, P, and heavy metals [Me(O)NPs] are presented and discussed for the first time. The potential mechanisms of the toxicity of heavy metals [Me(O)NPs] are summarized. Additionally, mathematical models of the toxicity and removal of P, heavy metals, and Me(O)NPs are overviewed. Finally, knowledge gaps and opportunities for further study are discussed to pave the way for fully understanding the inhibition of heavy metals [Me(O)NPs] and for reducing their inhibitory effect to maximize the reliability of the EBPR process.

Size Shapes the Active Microbiome of Methanogenic Granules, Corroborating a Biofilm Life Cycle

Methanogenic archaea are key players in cycling organic matter in nature but also in engineered waste treatment systems, where they generate methane, which can be used as a renewable energy source. In such systems in the built environment, complex methanogenic consortia are known to aggregate into highly organized, spherical granular biofilms comprising the interdependent microbial trophic groups mediating the successive stages of the anaerobic digestion (AD) process. This study separated methanogenic granules into a range of discrete size fractions, hypothesizing different biofilm growth stages, and separately supplied each with specific substrates to stimulate the activity of key AD trophic groups, including syntrophic acid oxidizers and methanogens. Rates of specific methanogenic activity were measured, and amplicon sequencing of 16S rRNA gene transcripts was used to resolve phylotranscriptomes across the series of size fractions. Increased rates of methane production were observed in each of the size fractions when hydrogen was supplied as the substrate compared with those of volatile fatty acids (acetate, propionate, and butyrate). This was connected to a shift toward hydrogenotrophic methanogenesis dominated by Methanobacterium and Methanolinea Interestingly, the specific active microbiomes measured in this way indicated that size was significantly more important than substrate in driving the structure of the active community in granules. Multivariate integration studywise discriminant analysis identified 56 genera shaping changes in the active community across both substrate and size. Half of those were found to be upregulated in the medium-sized granules, which were also the most active and potentially of the most important size, or life stage, for precision management of AD systems.IMPORTANCE Biological wastewater conversion processes collectively constitute one of the single biggest worldwide applications of microbial communities. There is an obvious requirement, therefore, to study the microbial systems central to the success of such technologies. Methanogenic granules, in particular, are architecturally fascinating biofilms that facilitate highly organized cooperation within the metabolic network of the anaerobic digestion (AD) process and, thus, are especially intriguing model systems for microbial ecology. This study, in a way not previously reported, provoked syntrophic and methanogenic activity and the structure of the microbial community, using specific substrates targeting the key trophic groups in AD. Unexpectedly, granule size more strongly than substrate shaped the active portion of the microbial community. Importantly, the findings suggest the size, or age, of granules inherently shapes the active microbiome linked to a life cycle. This provides exciting insights into the function of, and the potential for additional modeling of biofilm development in, methanogenic granules.

Elucidating sludge characteristic, substrate transformation and microbial evolution in a two-sludge denitrifying phosphorus removal system under the impact of HRT

Granule formation has been recognized as a promising biotechnology in denitrifying phosphorus removal (DPR) systems by facilitating phosphorus accumulation organisms (PAOs) especially denitrifying PAOs (DPAOs), and hydraulic selection made this a more difficult task in continuous operation. This study aimed at exploring the microscopic mechanism and putting forward an effective strategy for DPR granulation under the impact of hydraulic retention time (HRT) (12 h, 10 h, 8 h) in a novel Anaerobic Anoxic Oxic - Moving Bed Biofilm Reactor (A²/O - MBBR) system. With the reduction of intracellular carbon storage (COD_intra) efficiency (88.58%-78.53%), nitrogen (N) (85.45%-79.11%) and phosphorus (P) (96.55%-92.47%) removals both dropped, but it exhibited a growth of anoxic phosphorus uptake rate (PUR_A) (3.79-5.68 mg P/(gMLVSS·h)). The batch tests associating with substrate transformation of poly-β-hydroxyalkanoates (PHA), glycogen (Gly) agreed well with the corresponding stoichiometry of phosphorus release rate (PRR) (4.83-7.53 mg P/(gMLVSS·h)), PUR_A (3.55-5.43 mg P/(gMLVSS·h)), oxic phosphorus uptake rate (PUR_O) (6.08-6.21 mg P/(gMLVSS·h)), and DPAOs/PAOs ratios (57.17%-89.31%), indicating a shift of microbial community. DPR granules gradually stabilized with low sludge volume index (SVI₅/SVI₃₀ ratio = 1.1-1.2), dense and compact structure, higher P content (11.63%), more extracted extracellular polymeric substances (EPS) (111.40-160.31 mg/gMLVSS) as proteins/polysaccharides (PN/PS) ratios (1.70-3.47) increased, leading to better sludge settleability and cell hydrophobicity. Fluorescence in situ hybridization (FISH) results showed that PAOs (mainly Cluster I: 20.20%) were the dominant bacteria in the A²/O reactor although a small amount of Defluviicoccus (3.18-3.48%) was responsible for nitrite accumulation, while ammonium-oxidizing bacteria (AOB) (mainly Nitrosomonas: 10.75%) and nitrite-oxidizing bacteria (NOB) (mainly Nitrospira: 15.06%) were enriched in the MBBR.

A novel metabolic-ASM model for full-scale biological nutrient removal systems

This study demonstrates that META-ASM, a new integrated metabolic activated sludge model, provides an overall platform to describe the activity of the key organisms and processes relevant to biological nutrient removal (BNR) systems with a robust single-set of default parameters. This model overcomes various shortcomings of existing enhanced biological phosphorous removal (EBPR) models studied over the last twenty years. The model has been tested against 34 data sets from enriched lab polyphosphate accumulating organism (PAO)-glycogen accumulating organism (GAO) cultures and experiments with full-scale sludge from five water resource recovery facilities (WRRFs) with two different process configurations: three stage Phoredox (A2/O) and adapted Biodenitro™ combined with a return sludge sidestream hydrolysis tank (RSS). Special attention is given to the operational conditions affecting the competition between PAOs and GAOs, capability of PAOs and GAOs to denitrify, metabolic shifts as a function of storage polymer concentrations, as well as the role of these polymers in endogenous processes and fermentation. The overall good correlations obtained between the predicted versus measured EBPR profiles from different data sets support that this new model, which is based on in-depth understanding of EBPR, reduces calibration efforts. On the other hand, the performance comparison between META-ASM and literature models demonstrates that existing literature models require extensive parameter changes and have limited predictive power, especially in the prediction of long-term EBPR performance. The development of such a model able to describe in detail the microbial and chemical transformations of BNR systems with minimal adjustment to parameters suggests that the META-ASM model is a powerful tool to predict and mitigate EBPR upsets, optimise EBPR performance and to evaluate new process designs.

Effect of Varying Nitrate Concentrations on Denitrifying Phosphorus Uptake by DPAOs With a Molecular Insight Into Pho Regulon Gene Expression

Bacterial Pho regulon is a key regulator component in biological phosphorus-uptake. Poly-phosphate accumulating bacteria used in enhanced biological phosphorus removal (EBPR) system encounter negative regulation of the Pho regulon, resulting in reduced phosphorus-uptake from phosphorus-replete waste effluents. This study demonstrates possible trends of overcoming the PhoU negative regulation, resulting in excessive PO4 3--P uptake at varying concentrations of NO3 --N through denitrifying phosphorus removal process. We investigated the Pho regulon gene expression pattern and kinetic studies of P-removal by denitrifying phosphate accumulating organisms (DPAOs) which are able to remove both PO4 3--P and NO3 --N in single anoxic stage with the utilization of external carbon sources, without the use of stored polyhydroxyalkanoate (PHA) and without any anaerobic-aerobic or anaerobic-anoxic switches. Our study establishes that a minimum addition of 100 ppm NO3 --N leads to the withdrawal of the negative regulation of Pho regulon and results in ∼100% P-removal with concomitant escalated poly-phosphate accumulation by our established DPAO isolates and their artificially made consortium, isolated from sludge sample of PO4 3- -rich parboiled rice mill effluent, in a settling tank within 12 h of treatment. The same results were obtained when a phosphate rich effluent (stillage from distillery) mixed with a nitrate rich effluent (from explosive industry) was treated together in a single phase anoxic batch reactor, eliminating the need for alternating anaerobic/aerobic or anaerobic/anoxic switches for removing both the pollutants simultaneously. The highest poly-phosphate accumulation was observed to be more than 17% of cell dry weight. Our studies unequivocally establish that nitrate induction of Pho regulon is parallely associated with the repression of PhoU gene transcription, which is the negative regulator of Pho regulon. Based on earlier observations where similar nitrate mediated transcriptional repression was cited, we hypothesize the possible involvement of NarL/NarP transcriptional regulator proteins in PhoU repression. At present, we propose this denitrifying phosphorus removal endeavor as an innovative methodology to overcome the negative regulation of Pho regulon for accelerated unhindered phosphorus remediation from phosphate rich wastewater in India and the developing world where the stringency of EBPR and other reactors prevent their use due to financial reasons.

Global Sensitivity Analysis of Metabolic Models for Phosphorus Accumulating Organisms in Enhanced Biological Phosphorus Removal

The aim of this study was to identify, quantify and prioritize for the first time the sources of uncertainty in a mechanistic model describing the anaerobic-aerobic metabolism of phosphorus accumulating organisms (PAO) in enhanced biological phosphorus removal (EBPR) systems. These wastewater treatment systems play an important role in preventing eutrophication and metabolic models provide an advanced tool for improving their stability via system design, monitoring and prediction. To this end, a global sensitivity analysis was conducted using standard regression coefficients and Sobol sensitivity indices, taking into account the effect of 39 input parameters on 10 output variables. Input uncertainty was characterized with data in the literature and propagated to the output using the Monte Carlo method. The low degree of linearity between input parameters and model outputs showed that model simplification by linearization can be pursued only in very well defined circumstances. Differences between first and total-order sensitivity indices showed that variance in model predictions was due to interactions between combinations of inputs, as opposed to the direct effect of individual inputs. The major sources of uncertainty affecting the prediction of liquid phase concentrations, as well as intra-cellular glycogen and poly-phosphate was due to 64% of the input parameters. In contrast, the contribution to variance in intra-cellular PHA constituents was uniformly distributed among all inputs. In addition to the intra-cellular biomass constituents, notably PHB, PH₂MV and glycogen, uncertainty with respect to input parameters directly related to anaerobic propionate uptake, aerobic poly-phosphate formation, glycogen formation and temperature contributed most to the variance of all model outputs. Based on the distribution of total-order sensitivities, characterization of the influent stream and intra-cellular fractions of PHA can be expected to significantly improve model reliability. The variance of EBPR metabolic model predictions was quantified. The means to account for this variance, with respect to each quantity of interest, given knowledge of the corresponding input uncertainties, was prescribed. On this basis, possible avenues and pre-requisite requirements to simplify EBPR metabolic models for PAO, both structurally via linearization, as well as by reduction of the number of non-influential variables were outlined.

"Candidatus Accumulibacter delftensis": A clade IC novel polyphosphate-accumulating organism without denitrifying activity on nitrate

Populations of "Candidatus Accumulibacter", a known polyphosphate-accumulating organism, within clade IC have been proposed to perform anoxic P-uptake activity in enhanced biological phosphorus removal (EBPR) systems using nitrate as electron acceptor. However, no consensus has been reached on the ability of "Ca. Accumulibacter" members of clade IC to reduce nitrate to nitrite. Discrepancies might relate to the diverse operational conditions which could trigger the expression of the Nap and/or Nar enzyme and/or to the accuracy in clade classification. This study aimed to assess whether and how certain operational conditions could lead to the enrichment and enhance the denitrification capacity of "Ca. Accumulibacter" within clade IC. To study the potential induction of the denitrifying enzyme, an EBPR culture was enriched under anaerobic-anoxic-oxic (A2O) conditions that, based on fluorescence in situ hybridization and ppk gene sequencing, was composed of around 97% (on a biovolume basis) of affiliates of "Ca. Accumulibacter" clade IC. The influence of the medium composition, sludge retention time (SRT), polyphosphate content of the biomass (poly-P), nitrate dosing approach, and minimal aerobic SRT on potential nitrate reduction were studied. Despite the different studied conditions applied, only a negligible anoxic P-uptake rate was observed, equivalent to maximum 13% of the aerobic P-uptake rate. An increase in the anoxic SRT at the expenses of the aerobic SRT resulted in deterioration of P-removal with limited aerobic P-uptake and insufficient acetate uptake in the anaerobic phase. A near-complete genome (completeness = 100%, contamination = 0.187%) was extracted from the metagenome of the EBPR biomass for the here-proposed "Ca. Accumulibacter delftensis" clade IC. According to full-genome-based phylogenetic analysis, this lineage was distant from the canonical "Ca. Accumulibacter phosphatis", with closest neighbor "Ca. Accumulibacter sp. UW-LDO-IC" within clade IC. This was cross-validated with taxonomic classification of the ppk1 gene sequences. The genome-centric metagenomic analysis highlighted the presence of genes for assimilatory nitrate reductase (nas) and periplasmic nitrate reductase (nap) but no gene for respiratory nitrate reductases (nar). This suggests that "Ca. Accumulibacter delftensis" clade IC was not capable to generate the required energy (ATP) from nitrate under strict anaerobic-anoxic conditions to support an anoxic EBPR metabolism. Definitely, this study stresses the incongruence in denitrification abilities of "Ca. Accumulibacter" clades and reflects the true intra-clade diversity, which requires a thorough investigation within this lineage.

The difference of morphological characteristics and population structure in PAO and DPAOgranular sludges

We examined how long-term operation of anaerobic-oxic and anaerobic-anoxic sequencing batch reactors (SBRs) affects the enhanced biological phosphorus removal (EBPR) performance and sludge characteristics. The microbial characteristics of phosphorus accumulating organism (PAO) and denitrifying PAO (DPAO) sludge were also analyzed through a quantitative analysis of microbial community structure. Compared with the initial stage of operation characterized by unstable EBPR, both PAO and DPAO SBR produced a stable EBPR performance after about 100-day operation. From day 200 days (DPAO SBR) and 250 days (PAO SBR) onward, sludge granulation was observed, and the average granule size of DPAO SBR was approximately 5 times larger than that of PAO SBR. The DPAO granular sludge contained mainly rod-type microbes, whereas the PAO granular sludge contained coccus-type microbes. Fluorescence in situ hybridization analysis revealed that a high ratio of Accumulibacter clade I was found only in DPAO SBR, revealing the important role of this organism in the denitrifying EBPR system. A pyrosequencing analysis showed that Accumulibacter phosphatis was present in PAO sludge at a high proportion of 6%, whereas it rarely observed in DPAO sludge. Dechloromonas was observed in both PAO sludge (3.3%) and DPAO sludge (3.2%), confirming that this organism can use both O₂ and NO₃^- as electron acceptors. Further, Thauera spp. was identified to have a new possibility as denitrifier capable of phosphorous uptake under anoxic condition.

Recent advances in bio-P modelling - a new approach verified by full-scale observations

This paper summarizes recent developments in biological phosphorus removal modelling, with special attention to side-stream enhanced biological phosphorus removal (S2EBPR) systems on which previous models proved to be ineffective without case-by-case parameter adjustments. Through the research and experience of experts and practitioners, a new bio-kinetic model was developed including an additional group of biomass (glycogen accumulating organisms - GAOs) and new processes (such as aerobic and anoxic maintenance for PAO and GAO; enhanced denitrification processes; fermentation by PAOs which - along with PAO selection - is driven by oxidation-reduction potential (ORP)). This model successfully described various conditions in laboratory measurements and full plant data. The calibration data set is provided by Clean Water Services from Rock Creek Facility (Hillsboro, OR) including two parallel trains: conventional A2O and Westbank configurations, allowing the model to be verified on conventional and side-stream EBPR systems as well.

A modeling understanding on the phosphorous removal performances of A2O and reversed A2O processes in a full-scale wastewater treatment plant

Reversed A²O process (anoxic-anaerobic-aerobic) and conventional A²O process (anaerobic-anoxic-aerobic) are widely used in many wastewater treatment plants (WWTPs) in Asia. However, at present, there are still no consistent results to figure out which process has better total phosphorous (TP) removal performance and the mechanism for this difference was not clear yet. In this study, the treatment performances of both processes were compared in the same full-scale WWTP and the TP removal dynamics was analyzed by a modeling method. The treatment performance of full-scale WWTP showed the TP removal efficiency of the reversed A²O process was more efficient than in the conventional A²O process. The modeling results further reveal that the TP removal depends highly on the concentration and composition of influent COD. It had more efficient TP removal than the conventional A²O process only under conditions of sufficient influent COD and high fermentation products content. This study may lay a foundation for appropriate selection and optimization of treatment processes to suit practical wastewater properties.

Denitrifying capabilities of Tetrasphaera and their contribution towards nitrous oxide production in enhanced biological phosphorus removal processes

Denitrifying enhanced biological phosphorus removal (EBPR) systems can be an efficient means of removing phosphate (P) and nitrate (NO₃^-) with low carbon source and oxygen requirements. Tetrasphaera is one of the most abundant polyphosphate accumulating organisms present in EBPR systems, but their capacity to achieve denitrifying EBPR has not previously been determined. An enriched Tetrasphaera culture, comprising over 80% of the bacterial biovolume was obtained in this work. Despite the denitrification capacity of Tetrasphaera, this culture achieved only low levels of anoxic P-uptake. Batch tests with different combinations of NO₃^-, nitrite (NO₂^-) and nitrous oxide (N₂O) revealed lower N₂O accumulation by Tetrasphaera as compared to Accumulibacter and Competibacter when multiple electron acceptors were added. Electron competition was observed during the addition of multiple nitrogen electron acceptors species, where P uptake appeared to be slightly favoured over glycogen production in these situations. This study increases our understanding of the role of Tetrasphaera-related organisms in denitrifying EBPR systems.

Elucidation of microbial characterization of aerobic granules in a sequencing batch reactor performing simultaneous nitrification, denitrification and phosphorus removal at varying carbon to phosphorus ratios

An aerobic granules simultaneous nitrification, denitrification and phosphorus removal (SNDPR) system was evaluated in terms of the reactor performance and microbial population dynamics with decreasing C/P ratios from 50 to 16. The effects of C/P ratios on organic carbon and nutrients removal were investigated, as well as the alpha diversity of the bacterial community and bacterial compositions by using Illumina MiSeq pyrosequencing technology. Finally, the relative abundances and distribution patterns were identified and assessed given the key functional groups involved in biological nutrients removals to reveal the effects of C/P ratios to aerobic granules in the SNDPR from the molecular level.

Cooperation between Candidatus Competibacter and Candidatus Accumulibacter clade I, in denitrification and phosphate removal processes

Although simultaneous P-removal and nitrate reduction has been observed in laboratory studies as well as full-scale plants, there are contradictory reports on the ability of PAO I to efficiently use nitrate as electron acceptor. Such discrepancy could be due to other microbial groups performing partial denitrification from nitrate to nitrite. The denitrification capacities of two different cultures, a highly enriched PAO I and a PAO I-GAO cultures were assessed through batch activity tests conducted before and after acclimatization to nitrate. Negligible anoxic phosphate uptake coupled with a reduction of nitrate was observed in the highly enriched PAO I culture. On the opposite, the PAO I-GAO culture showed a higher anoxic phosphate uptake activity. Both cultures exhibited good anoxic phosphate uptake activity with nitrite (8.7 ± 0.3 and 9.6 ± 1.8 mgPO₄-P/gVSS.h in the PAO I and PAO I-GAO cultures, respectively). These findings suggest that other microbial populations, such as GAOs, were responsible to reduce nitrate to nitrite in this EBPR system, and that PAO I used the nitrite generated for anoxic phosphate uptake. Moreover, the simultaneous denitrification and phosphate removal process using nitrite as electron acceptor may be a more sustainable process as can: i) reduce the carbon consumption, ii) reduce oxygen demand of WWTP, and iii) due to a lower growth yield contribute to a lower sludge production.

Chronic responses of aerobic granules to zinc oxide nanoparticles in a sequencing batch reactor performing simultaneous nitrification, denitrification and phosphorus removal

The reactor performance, granules characteristics and microbial population dynamics were investigated to assess the chronic responses of aerobic granules to zinc oxide nanoparticles (ZnO NPs) of 0, 5, 10 and 20mg/L for a period of 180days. The results showed that ZnO NPs stimulated COD removal, whereas caused inhibition to both nitrification and denitrification. However, biological phosphorus removal remained effective and stable. Introduction of ZnO NPs sharply decreased the respiration of granules, while did not change the settleability. Both content of extracellular polymeric substances (EPS) and the ratio of protein to polysaccharides (PN/PS) rose significantly. MiSeq pyrosequencing was employed to explore the microbial population dynamics. Results demonstrated that up to 20mg/L reduced the alpha-diversity of bacterial communities. Finally, phylogenetic classification of the dominant functional species involved in biological nutrients removal were identified to assess the effects of ZnO NPs to aerobic granules from the molecular level.

Effects of electron acceptors on sulphate reduction activity in activated sludge processes

The concentration of sulphate present in wastewater can vary from 10 to 500 mg SO₄²⁻/L. During anaerobic conditions, sulphate is reduced to sulphide by sulphate-reducing bacteria (SRB). Sulphide generation is undesired in wastewater treatment plants (WWTPs). Previous research indicated that SRB are inhibited by the presence of electron acceptors (such as O₂, NO₃ and NO₂). However, the contact times and concentrations used in those studies are by far higher than occur in WWTPs. Since sulphide can influence the biological nitrogen and phosphorus removal processes, this research aimed to understand how the different electron acceptors commonly present in biological nutrient removal (BNR) systems can affect the proliferation of SRB. For this purpose, a culture of SRB was enriched in a sequencing batch reactor (approx. 88% of the total bacteria population). Once enriched, the SRB were exposed for 2 h to typical concentrations of electron acceptors like those observed in BNR systems. Their activity was assessed using three different types of electron donors (acetate, propionate and lactate). Oxygen was the most inhibiting electron acceptor regardless the carbon source used. After exposure to oxygen and when feeding acetate, an inactivation time in the sulphate reduction activity was observed for 1.75 h. Once the sulphate reduction activity resumed, only 60% of the original activity was recovered. It is suggested that the proliferation of SRB is most likely to occur in BNR plants with an anaerobic fraction higher than 15% and operating at sludge retention times higher than 20 days (at a temperature of 20 °C). These results can be used to implement strategies to control the growth of sulphate reducers that might compete for organic carbon with phosphate-accumulating organisms.

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems

Understanding the microbiology of phosphorus (P) removal is considered essential to knowledge-based optimization of enhanced biological P removal (EBPR) systems. Biological P removal is achieved in these systems by promoting the growth of organisms collectively known as the polyphosphate accumulating organisms (PAOs). Also considered important to EBPR are the glycogen accumulating organisms (GAOs), which are theorized to compete with the PAOs for resources at the expense of P removal efficiency. Numerous studies have sought to identify the PAOs and their GAOs competitors, with several candidates proposed for each over the last few decades. The current study collectively assessed the abundance and diversity of all proposed PAOs and GAOs in 18 Danish full-scale wastewater treatment plants with well-working biological nutrient removal over a period of 9 years using 16S rRNA gene amplicon sequencing. The microbial community structure in all plants was relatively stable over time. Evidence for the role of the proposed PAOs and GAOs in EBPR varies and is critically assessed, in light of their calculated amplicon abundances, to indicate which of these are important in full-scale systems. Bacteria from the genus Tetrasphaera were the most abundant of the PAOs. The “Candidatus Accumulibacter” PAOs were in much lower abundance and appear to be biased by the amplicon-based method applied. The genera Dechloromonas, Microlunatus, and Tessaracoccus were identified as abundant putative PAO that require further research attention. Interestingly, the actinobacterial Micropruina and sbr-gs28 phylotypes were among the most abundant of the putative GAOs. Members of the genera Defluviicoccus, Propionivibrio, the family Competibacteraceae, and the spb280 group were also relatively abundant in some plants. Despite observed high abundances of GAOs (periodically exceeding 20% of the amplicon reads), P removal performance was maintained, indicating that these organisms were not outcompeting the PAOs in these EBPR systems. Phylogenetic diversity within each of the PAOs and GAOs genera was observed, which is consistent with reported metabolic diversity for these. Whether or not key traits can be assigned to sub-genus level clades requires further investigation.

Plant-wide modelling of phosphorus transformations in wastewater treatment systems: Impacts of control and operational strategies

The objective of this paper is to report the effects that control/operational strategies may have on plant-wide phosphorus (P) transformations in wastewater treatment plants (WWTP). The development of a new set of biological (activated sludge, anaerobic digestion), physico-chemical (aqueous phase, precipitation, mass transfer) process models and model interfaces (between water and sludge line) were required to describe the required tri-phasic (gas, liquid, solid) compound transformations and the close interlinks between the P and the sulfur (S) and iron (Fe) cycles. A modified version of the Benchmark Simulation Model No. 2 (BSM2) (open loop) is used as test platform upon which three different operational alternatives (A₁, A₂, A₃) are evaluated. Rigorous sensor and actuator models are also included in order to reproduce realistic control actions. Model-based analysis shows that the combination of an ammonium ( [Formula: see text] ) and total suspended solids (X_TSS) control strategy (A₁) better adapts the system to influent dynamics, improves phosphate [Formula: see text] accumulation by phosphorus accumulating organisms (X_PAO) (41%), increases nitrification/denitrification efficiency (18%) and reduces aeration energy (E_aeration) (21%). The addition of iron ( [Formula: see text] ) for chemical P removal (A₂) promotes the formation of ferric oxides (X_HFO-H, X_HFO-L), phosphate adsorption (X_HFO-H,P, X_HFO-L,P), co-precipitation (X_HFO-H,P,old, X_HFO-L,P,old) and consequently reduces the P levels in the effluent (from 2.8 to 0.9 g P.m^-3). This also has an impact on the sludge line, with hydrogen sulfide production ( [Formula: see text] ) reduced (36%) due to iron sulfide (X_FeS) precipitation. As a consequence, there is also a slightly higher energy production (E_production) from biogas. Lastly, the inclusion of a stripping and crystallization unit (A₃) for P recovery reduces the quantity of P in the anaerobic digester supernatant returning to the water line and allows potential struvite ( [Formula: see text] ) recovery ranging from 69 to 227 kg.day^-1 depending on: (1) airflow (Q_stripping); and, (2) magnesium ( [Formula: see text] ) addition. All the proposed alternatives are evaluated from an environmental and economical point of view using appropriate performance indices. Finally, some deficiencies and opportunities of the proposed approach when performing (plant-wide) wastewater treatment modelling/engineering projects are discussed.

The occurrence of enhanced biological phosphorus removal in a 200,000 m3/day partial nitration and Anammox activated sludge process at the Changi water reclamation plant, Singapore

Mainstream partial nitritation and Anammox (PN/A) has been observed and studied in the step-feed activated sludge process at the Changi water reclamation plant (WRP), which is the largest WRP (800,000 m³/d) in Singapore. This paper presents the study results for enhanced biological phosphorus removal (EBPR) co-existing with PN/A in the activated sludge process. Both the in-situ EBPR efficiency and ex-situ activities of phosphorus release and uptake were high. The phosphorus accumulating organisms were dominant, with little presence of glycogen accumulating organisms in the activated sludge. Chemical oxygen demand (COD) mass balance illustrated that the carbon usage for EBPR was the same as that for heterotrophic denitrification, owing to autotrophic PN/A conversions. This much lower carbon demand for nitrogen removal, compared to conventional biological nitrogen removal, made effective EBPR possible. This paper demonstrated for the first time the effective EBPR co-existence with PN/A in the mainstream in a large full-scale activated sludge process, and the feasibility to accommodate EBPR into the mainstream PN/A process. It also shows EBPR can work under warm climates.

A novel stoichiometries methodology to quantify functional microorganisms in simultaneous (partial) nitrification-endogenous denitrification and phosphorus removal (SNEDPR)

Although efficient removal of carbon (C), nitrogen (N) and phosphorous (P) from wastewater with low C/N ratio was achieved in anaerobic/aerobic simultaneous nitrification-endogenous denitrification and phosphorus removal (SNEDPR) systems, the removal pathways and metabolic transformations in this complex system are unclear. This work targeted at developing the stoichiometric models for denitrifying glycogen organisms (DGAOs) via nitrite and nitrate (DGAONi and DGAONa), and demonstrating a novel methodology to quantify diverse functional microorganisms (e.g. ammonia and nitrite oxidizing bacteria, aerobic phosphorus accumulating organisms (APAOs), denitrifying PAOs (DPAOs) and aerobic GAOs (AGAOs)) for the removal of C, N and P. The results showed that the anaerobic intracellular carbon storage (CODintra) was mainly accomplished by GAOs, and PAOs were only responsible for about 40% of CODintra through a stable P release. At the aerobic stage, 84.9% of P was removed by APAOs with 15.1% left by DPAOs, while 64.6% of N was removed by DGAOs (45.8% by DGAONi and 18.8% by DGAONa) with 18.1% by DPAOs and 17.3% by bacterial growth. High proportion of N removal via nitrite (partial nitrification-endogenous denitrification) (71%) saved 7.3% aeration and 38% intracellular carbon demand. However, AGAOs still activated well at the aerobic intercellular carbon consumption, which limited the further improvement of N removal efficiency. By elucidating the nutrient removal pathways among diverse functional microorganisms, the methodology developed in this study could accelerate the nutrient removal in the SNEDPR process.

Mathematical Modeling of Nitrous Oxide Production during Denitrifying Phosphorus Removal Process

A denitrifying phosphorus removal process undergoes frequent alternating anaerobic/anoxic conditions to achieve phosphate release and uptake, during which microbial internal storage polymers (e.g., Polyhydroxyalkanoate (PHA)) could be produced and consumed dynamically. The PHA turnovers play important roles in nitrous oxide (N2O) accumulation during the denitrifying phosphorus removal process. In this work, a mathematical model is developed to describe N2O dynamics and the key role of PHA consumption on N2O accumulation during the denitrifying phosphorus removal process for the first time. In this model, the four-step anoxic storage of polyphosphate and four-step anoxic growth on PHA using nitrate, nitrite, nitric oxide (NO), and N2O consecutively by denitrifying polyphosphate accumulating organisms (DPAOs) are taken into account for describing all potential N2O accumulation steps in the denitrifying phosphorus removal process. The developed model is successfully applied to reproduce experimental data on N2O production obtained from four independent denitrifying phosphorus removal study reports with different experimental conditions. The model satisfactorily describes the N2O accumulation, nitrogen reduction, phosphate release and uptake, and PHA dynamics for all systems, suggesting the validity and applicability of the model. The results indicated a substantial role of PHA consumption in N2O accumulation due to the relatively low N2O reduction rate by using PHA during denitrifying phosphorus removal.

Nitrite survival and nitrous oxide production of denitrifying phosphorus removal sludges in long-term nitrite/nitrate-fed sequencing batch reactors

Nitrite-based phosphorus (P) removal could be useful for innovative biological P removal systems where energy and carbon savings are a priority. However, using nitrite for denitrification may cause nitrous oxide (N2O) accumulation and emissions. A denitrifying nitrite-fed P removal system [Formula: see text] was successfully set up in a sequencing batch reactor (SBR) and was run for 210 days. The maximum pulse addition of nitrite to [Formula: see text] was 11 mg NO2(-)-N/L in the bulk, and a total of 34 mg NO2(-)-N/L of nitrite was added over three additions. Fluorescent in situ hybridization results indicated that the P-accumulating organisms (PAOs) abundance was 75 ± 1.1% in [Formula: see text] , approximately 13.6% higher than that in a parallel P removal SBR using nitrate [Formula: see text] . Type II Accumulibacter (PAOII) (unable to use nitrate as an electron acceptor) was the main PAOs species in [Formula: see text] , contributing 72% to total PAOs. Compared with [Formula: see text] , [Formula: see text] biomass had enhanced nitrite/free nitrous acid (FNA) endurance, as demonstrated by its higher nitrite denitrification and P uptake rates. N2O accumulated temporarily in [Formula: see text] after each pulse of nitrite. Peak N2O concentrations in the bulk for [Formula: see text] were generally 6-11 times higher than that in [Formula: see text] ; these accumulations were rapidly denitrified to nitrogen gases. N2O concentration increased rapidly in nitrate-cultivated biomass when 5 or 10 mg NO2(-)-N/L per pulse was added. Whereas, N2O accumulation did not occur in nitrite-cultivated biomass until up to 30 mg NO2(-)-N/L per pulse was added. Long-term acclimation to nitrite and pulse addition of nitrite in [Formula: see text] reduced the risk of nitrite accumulation, and mitigated N2O accumulation and emissions from denitrifying P removal by nitrite.

The impact of aeration on the competition between polyphosphate accumulating organisms and glycogen accumulating organisms

In wastewater treatment plants (WWTPs), aeration is the major energetic cost, thus its minimisation will improve the cost-effectiveness of the process. This study shows that both the dissolved oxygen (DO) concentration and aerobic hydraulic retention time (HRT) affect the competition between polyphosphate accumulating organisms (PAOs) and glycogen accumulating organisms (GAOs). At low DO levels, Accumulibacter PAOs were shown to have an advantage over Competibacter GAOs, as PAOs had a higher oxygen affinity and thus largely maintained their aerobic activity at low DO levels, while GAO activity decreased. Bioreactor operation at low DO levels was found to increase the PAO fraction of the sludge. Furthermore, an increase in aerobic HRT (at a DO level of 2 mg O2/L), promoted the proliferation of GAOs over PAOs, decreasing the EBPR efficiency. Overall, this study shows that low aeration can be beneficial for EBPR performance through selecting for PAOs over GAOs, which should be incorporated into WWTP models in order to minimise energetic costs and improve WWTP sustainability.

Metabolic modelling of full-scale enhanced biological phosphorus removal sludge

This study investigates, for the first time, the application of metabolic models incorporating polyphosphate accumulating organisms (PAOs) and glycogen accumulating organisms (GAOs) towards describing the biochemical transformations of full-scale enhanced biological phosphorus removal (EBPR) activated sludge from wastewater treatment plants (WWTPs). For this purpose, it was required to modify previous metabolic models applied to lab-scale systems by incorporating the anaerobic utilisation of the TCA cycle and the aerobic maintenance processes based on sequential utilisation of polyhydroxyalkanoates, followed by glycogen and polyphosphate. The abundance of the PAO and GAO populations quantified by fluorescence in situ hybridisation served as the initial conditions of each biomass fraction, whereby the models were able to describe accurately the experimental data. The kinetic rates were found to change among the four different WWTPs studied or even in the same plant during different seasons, either suggesting the presence of additional PAO or GAO organisms, or varying microbial activities for the same organisms. Nevertheless, these variations in kinetic rates were largely found to be proportional to the difference in acetate uptake rate, suggesting a viable means of calibrating the metabolic model. The application of the metabolic model to full-scale sludge also revealed that different Accumulibacter clades likely possess different acetate uptake mechanisms, as a correlation was observed between the energetic requirement for acetate transport across the cell membrane with the diversity of Accumulibacter present. Using the model as a predictive tool, it was shown that lower acetate concentrations in the feed as well as longer aerobic retention times favour the dominance of the TCA metabolism over glycolysis, which could explain why the anaerobic TCA pathway seems to be more relevant in full-scale WWTPs than in lab-scale systems.

Modelling the metabolic shift of polyphosphate-accumulating organisms

Enhanced biological phosphorus removal (EBPR) is one of the most important methods of phosphorus removal in municipal wastewater treatment plants, having been described by different modelling approaches. In this process, the PAOs (polyphosphate accumulating organisms) and GAOs (glycogen accumulating organisms) compete for volatile fatty acids uptake under anaerobic conditions. Recent studies have revealed that the metabolic pathways used by PAOs in order to obtain the energy and the reducing power needed for polyhydroxyalkanoates synthesis could change depending on the amount of polyphosphate stored in the cells. The model presented in this paper extends beyond previously developed metabolic models by including the ability of PAO to change their metabolic pathways according to the content of poly-P available. The processes of the PAO metabolic model were adapted to new formulations enabling the change from P-driven VFA uptake to glycogen-driven VFA uptake using the same process equations. The stoichiometric parameters were changed from a typical PAO coefficient to a typical GAO coefficient depending on the internal poly-P with Monod-type expressions. The model was calibrated and validated with seven experiments under different internal poly-P concentrations, showing the ability to correctly represent the PAO metabolic shift at low poly-P concentrations. The sensitivity and error analysis showed that the model is robust and has the ability to describe satisfactorily the change from one metabolic pathway to the other one, thereby encompassing a wider range of process conditions found in EBPR plants.

Survival strategies of polyphosphate accumulating organisms and glycogen accumulating organisms under conditions of low organic loading

Enhanced biological phosphorus removal (EBPR) is usually limited by organic carbon availability in wastewater treatment plants (WWTPs). Polyphosphate accumulating organisms (PAOs) and glycogen accumulating organisms (GAOs) were operated under extended periods with low organic carbon loading in order to examine its impact on their activity and survival. The decrease in organic carbon load affected PAOs and GAOs in different ways, where the biomass decay rate of GAOs was approximately 4times higher than PAOs. PAOs tended to conserve a relatively high residual concentration of polyhydroxyalkanoates (PHAs) under aerobic conditions, while GAOs tended to deplete their available PHA more rapidly. This slower oxidation rate of PHA by PAOs at residual concentration levels enabled them to maintain an energy source for aerobic maintenance processes for longer than GAOs. This may provide PAOs with an advantage over GAOs in surviving the low organic loading conditions commonly found in full-scale wastewater treatment plants.

The effect of substrate competition on the metabolism of polyphosphate accumulating organisms (PAOs)

The type of carbon source present in the wastewater is one factor that affects the competition between polyphosphate accumulating organisms (PAO) and glycogen accumulating organisms (GAO) and therefore, the efficiency of the enhanced biological phosphorus removal (EBPR) process. This study investigated the impact of the carbon source composition on the anaerobic and aerobic kinetics of PAOs and the EBPR performance of an 85% PAO enrichment. When both acetate (HAc) and propionate (HPr) were present, propionate was depleted more quickly, with a constant uptake rate of 0.18 ± 0.02 C-mol/(C-mol biomass·h), while the acetate uptake rate decreased with an increase in propionate concentration, due to the substrate competition between acetate and propionate. The metabolic model for PAOs was modified to incorporate the anaerobic substrate competition effect. The aerobic rates for phosphorus (P) uptake, glycogen production and polyhydroxyalkanoates (PHA) degradation were within the same range for all tests, indicating that these rates are essentially independent of the acetate and propionate concentration, simplifying the calibration procedure for metabolic models. The metabolic model applied to describe the anaerobic and aerobic activity agreed well with the experimental data of HAc, HPr, P, PHA and biomass growth. The low glycogen consumption observed suggest that some reducing equivalents were generated anaerobically through the TCA cycle. The results of this work suggest that the propionate uptake kinetics by PAOs can provide them an advantage over GAOs in EBPR systems, even when the propionate fraction of the influent is relatively low.

Multilevel correlations in the biological phosphorus removal process: From bacterial enrichment to conductivity-based metabolic batch tests and polyphosphatase assays

Enhanced biological phosphorus removal (EBPR) from wastewater relies on the preferential selection of active polyphosphate-accumulating organisms (PAO) in the underlying bacterial community continuum. Efficient management of the bacterial resource requires understanding of population dynamics as well as availability of bioanalytical methods for rapid and regular assessment of relative abundances of active PAOs and their glycogen-accumulating competitors (GAO). A systems approach was adopted here toward the investigation of multilevel correlations from the EBPR bioprocess to the bacterial community, metabolic, and enzymatic levels. Two anaerobic-aerobic sequencing-batch reactors were operated to enrich activated sludge in PAOs and GAOs affiliating with "Candidati Accumulibacter and Competibacter phosphates", respectively. Bacterial selection was optimized by dynamic control of the organic loading rate and the anaerobic contact time. The distinct core bacteriomes mainly comprised populations related to the classes Betaproteobacteria, Cytophagia, and Chloroflexi in the PAO enrichment and of Gammaproteobacteria, Alphaproteobacteria, Acidobacteria, and Sphingobacteria in the GAO enrichment. An anaerobic metabolic batch test based on electrical conductivity evolution and a polyphosphatase enzymatic assay were developed for rapid and low-cost assessment of the active PAO fraction and dephosphatation potential of activated sludge. Linear correlations were obtained between the PAO fraction, biomass specific rate of conductivity increase under anaerobic conditions, and polyphosphate-hydrolyzing activity of PAO/GAO mixtures. The correlations between PAO/GAO ratios, metabolic activities, and conductivity profiles were confirmed by simulations with a mathematical model developed in the aqueous geochemistry software PHREEQC.

Modeling of biofilm systems: a review

The modeling of biochemical processes in biofilms is more complex compared to those in suspended biomass due to the existence of substrate gradients. The diffusion and reaction of substrates within the biofilms were simulated in 1D models in the 1970s. The quality of these simulation results was later improved by consideration of mass transfer at the bulk/biofilm interface and detachment of biomass from the surface. Furthermore, modeling of species distribution along the axis perpendicular to the substratum helped to simulate productivity and long-term behavior in multispecies biofilms. Multidimensional models that were able to give a realistic prediction of the surface structure of biofilms were published in the 1990s. The 2D or 3D representation of the distribution of the species in a matrix of extracellular polymeric substances (EPS) helped predict the behavior of multispecies biofilm systems. The influence of shear forces on such 2D or 3D biofilm structures was included by solving the Navier-Stokes equation for the liquid phase above the biofilm. More recently, the interaction between the fluid and biofilm structures was addressed more seriously by no longer considering the biofilm structures as being rigid. The latter approach opened a new door, enabling one to describe biofilms as viscoelastic systems that are not only able to grow and produce but also be deformed or even dislodged if external forces are applied.

Identification of trigger factors selecting for polyphosphate- and glycogen-accumulating organisms in aerobic granular sludge sequencing batch reactors

Nutrient removal performances of sequencing batch reactors using granular sludge for intensified biological wastewater treatment rely on optimal underlying microbial selection. Trigger factors of bacterial selection and nutrient removal were investigated in these novel biofilm systems with specific emphasis on polyphosphate- (PAO) and glycogen-accumulating organisms (GAO) mainly affiliated with Accumulibacter and Competibacter, respectively. In a first dynamic reactor operated with stepwise changes in concentration and ratio of acetate and propionate (Ac/Pr) under anaerobic feeding and aerobic starvation conditions and without wasting sludge periodically, propionate favorably selected for Accumulibacter (35% relative abundance) and stable production of granular biomass. A Plackett-Burman multifactorial experimental design was then used to screen in eight runs of 50 days at stable sludge retention time of 15 days for the main effects of COD concentration, Ac/Pr ratio, COD/P ratio, pH, temperature, and redox conditions during starvation. At 95% confidence level, pH was mainly triggering direct Accumulibacter selection and nutrient removal. The overall PAO/GAO competition in granular sludge was statistically equally impacted by pH, temperature, and redox factors. High Accumulibacter abundances (30-47%), PAO/GAO ratios (2.8-8.4), and phosphorus removal (80-100%) were selected by slightly alkaline (pH > 7.3) and lower mesophilic (<20 °C) conditions, and under full aeration during fixed 2-h starvation. Nitrogen removal by nitrification and denitrification (84-97%) was positively correlated to pH and temperature. In addition to alkalinity, non-limited organic conditions, 3-carbon propionate substrate, sludge age control, and phase length adaptation under alternating aerobic-anoxic conditions during starvation can lead to efficient nutrient-removing granular sludge biofilm systems.

The selective role of nitrite in the PAO/GAO competition

Proliferation of Glycogen Accumulating Organisms (GAOs) accounts as one of the major bottlenecks in biological phosphorus removal systems. GAO outcompeting polyphosphate accumulating organisms (PAOs) results in lower P-removal. Thus, finding optimal conditions that favour PAO in front of GAO is a current focus of research. This work shows how nitrite can provide a novel strategy for PAO enrichment. A propionate-fed GAO-enriched biomass (70% Defluviicoccus I, 18% Defluviicoccus II and 10% PAO) was subjected more than 50 d under anaerobic-anoxic conditions with nitrite as electron acceptor. These operational conditions led to a PAO-enriched sludge (85%) where GAO were washed out of the system (<10%), demonstrating the validity of the new approach for PAO enrichment. In addition, the presented suppression of Defluviicocus GAO with nitrite represents an add-on benefit to the nitrite-based systems since the proliferation of non-desirable GAO can be easily ruled out and added to the other benefits (i.e. lower aeration and COD requirements).

Occurrence of PAOI in a low temperature EBPR system

The occurrence of Accumulibacter Type I (a known phosphorus-accumulating organism, PAO) has received increased attention due to the potential operating benefits associated with their denitrifying activity in enhanced biological phosphorus removal (EBPR) wastewater treatment plants. In this study, after a shift from an enriched glycogen-accumulating organism (GAO) culture (competitors of PAO) to a PAO-enriched system, Accumulibacter Type I (PAO I) became dominant in an anaerobic-aerobic EBPR system fed with acetate and operated at 10°C with a net aerobic solids retention time (SRT) of 6 d. Since Accumulibacter Type II (PAO II) were not detected, the low temperature in combination with the net aerobic SRT applied appeared to have suppressed their growth as well. The stoichiometry of PAO I was in agreement with previous metabolic models, suggesting that it was the main PAO organisms present in previous studies operated under similar conditions. Moreover, under poly-P limiting conditions, PAO I were unable to switch to a GAO-like metabolism at low temperatures. These results contribute to increase the understanding of the physiology, microbial metabolism and microbial ecology of PAO I.