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For: Wen J, Xie DF, Price M, Ren T, Deng YQ, Gui LJ, Guo XL, He XJ. Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data. Mol Phylogenet Evol 2021;161:107183. [PMID: 33892097 DOI: 10.1016/j.ympev.2021.107183] [Citation(s) in RCA: 53] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 04/12/2021] [Accepted: 04/15/2021] [Indexed: 02/05/2023]
Number Cited by Other Article(s)
1
Wilf P. Osmoxylon-like fossils from early Eocene South America: West Gondwana-Malesia connections in Araliaceae. AMERICAN JOURNAL OF BOTANY 2025:e70045. [PMID: 40387275 DOI: 10.1002/ajb2.70045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 03/28/2025] [Accepted: 03/28/2025] [Indexed: 05/20/2025]
2
Magon G, Palumbo F, Barcaccia G. Genetics, genomics and breeding of fennel. BMC PLANT BIOLOGY 2025;25:595. [PMID: 40335931 PMCID: PMC12057180 DOI: 10.1186/s12870-025-06608-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Accepted: 04/23/2025] [Indexed: 05/09/2025]
3
Zhong Q, Wang Z, Xu J, Yan L, Sun Q. Comparative and phylogenetic analysis of the complete chloroplast genome sequences of Melanoseris cyanea group. Sci Rep 2025;15:10566. [PMID: 40148540 PMCID: PMC11950356 DOI: 10.1038/s41598-025-95325-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Accepted: 03/20/2025] [Indexed: 03/29/2025]  Open
4
Park S, Hwang Y, Kim H, Choi K. Insights into the nuclear-organelle DNA integration in Cicuta virosa (Apiaceae) provided by complete plastid and mitochondrial genomes. BMC Genomics 2025;26:102. [PMID: 39901091 PMCID: PMC11792336 DOI: 10.1186/s12864-025-11230-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Accepted: 01/09/2025] [Indexed: 02/05/2025]  Open
5
Han J, Munakata R, Takahashi H, Koeduka T, Kubota M, Moriyoshi E, Hehn A, Sugiyama A, Yazaki K. Catalytic mechanism underlying the regiospecificity of coumarin-substrate transmembrane prenyltransferases in Apiaceae. PLANT & CELL PHYSIOLOGY 2025;66:1-14. [PMID: 39575581 PMCID: PMC11775389 DOI: 10.1093/pcp/pcae134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 11/16/2024] [Accepted: 11/22/2024] [Indexed: 01/30/2025]
6
Song BN, Liu CK, Deng JJ, Tan WY, Zhou SD, He XJ. Genome skimming provides evidence to accept two new genera (Apiaceae) separated from the Peucedanum s.l. FRONTIERS IN PLANT SCIENCE 2025;15:1518418. [PMID: 39902214 PMCID: PMC11788392 DOI: 10.3389/fpls.2024.1518418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Accepted: 12/19/2024] [Indexed: 02/05/2025]
7
Song BN, Aou X, Tian RM, Cai J, Tan WY, Liu CK, He XJ, Zhou SD. Morphology, phylogeography, phylogeny, and taxonomy of Cyclorhiza (Apiaceae). FRONTIERS IN PLANT SCIENCE 2025;15:1504734. [PMID: 39845492 PMCID: PMC11750748 DOI: 10.3389/fpls.2024.1504734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Accepted: 11/29/2024] [Indexed: 01/24/2025]
8
Joh HJ, Park YS, Kang JS, Kim JT, Lado JP, Han SI, Chin YW, Park HS, Park JY, Yang TJ. A recent large-scale intraspecific IR expansion and evolutionary dynamics of the plastome of Peucedanum japonicum. Sci Rep 2025;15:104. [PMID: 39748098 PMCID: PMC11696177 DOI: 10.1038/s41598-024-84540-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Accepted: 12/24/2024] [Indexed: 01/04/2025]  Open
9
Zhou N, Miao K, Hou L, Liu H, Chen J, Ji Y. Phylotranscriptomic analyses reveal the evolutionary complexity of Paris L. (Melanthiaceae), a morphologically distinctive genus with significant pharmaceutical importance. ANNALS OF BOTANY 2024;134:1277-1290. [PMID: 39221840 PMCID: PMC11688527 DOI: 10.1093/aob/mcae156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 09/01/2024] [Indexed: 09/04/2024]
10
Wen J, Zhu JW, Ma XD, Li HM, Wu BC, Zhou W, Yang JX, Song CF. Phylogenomics and adaptive evolution of hydrophytic umbellifers (tribe Oenantheae, Apioideae) revealed from chloroplast genomes. BMC PLANT BIOLOGY 2024;24:1140. [PMID: 39609760 PMCID: PMC11603818 DOI: 10.1186/s12870-024-05863-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 11/22/2024] [Indexed: 11/30/2024]
11
Song YX, Yang CY, Zhou YY, Yu Y. Speciation and diversification of the Bupleurum (Apiaceae) in East Asia. PHYTOKEYS 2024;248:41-57. [PMID: 39484083 PMCID: PMC11522740 DOI: 10.3897/phytokeys.248.132707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Accepted: 08/31/2024] [Indexed: 11/03/2024]
12
Chen L, Song BN, Yang L, Wang Y, Wang YY, Aou X, He XJ, Zhou SD. Phylogeny, adaptive evolution, and taxonomy of Acronema (Apiaceae): evidence from plastid phylogenomics and morphological data. FRONTIERS IN PLANT SCIENCE 2024;15:1425158. [PMID: 39220016 PMCID: PMC11362068 DOI: 10.3389/fpls.2024.1425158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 07/24/2024] [Indexed: 09/04/2024]
13
Wen J, Wu BC, Li HM, Zhou W, Song CF. Plastome structure and phylogenetic relationships of genus Hydrocotyle (apiales): provide insights into the plastome evolution of Hydrocotyle. BMC PLANT BIOLOGY 2024;24:778. [PMID: 39148054 PMCID: PMC11325595 DOI: 10.1186/s12870-024-05483-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 08/05/2024] [Indexed: 08/17/2024]
14
Huang XC, Tang H, Wei X, He Y, Hu S, Wu JY, Xu D, Qiao F, Xue JY, Zhao Y. The gradual establishment of complex coumarin biosynthetic pathway in Apiaceae. Nat Commun 2024;15:6864. [PMID: 39127760 PMCID: PMC11316762 DOI: 10.1038/s41467-024-51285-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 08/05/2024] [Indexed: 08/12/2024]  Open
15
Song BN, Liu CK, Ren T, Xiao YL, Chen L, Xie DF, He AG, Xu P, Fan X, Zhou SD, He XJ. Plastid phylogenomics contributes to the taxonomic revision of taxa within the genus Sanicula L. and acceptance of two new members of the genus. FRONTIERS IN PLANT SCIENCE 2024;15:1351023. [PMID: 38916035 PMCID: PMC11194442 DOI: 10.3389/fpls.2024.1351023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 05/14/2024] [Indexed: 06/26/2024]
16
Jia L, Wang S, Hu J, Miao K, Huang Y, Ji Y. Plastid phylogenomics and fossil evidence provide new insights into the evolutionary complexity of the 'woody clade' in Saxifragales. BMC PLANT BIOLOGY 2024;24:277. [PMID: 38605351 PMCID: PMC11010409 DOI: 10.1186/s12870-024-04917-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 03/15/2024] [Indexed: 04/13/2024]
17
Jiang QP, Guo XL, Zhao AQ, Fan X, Li Q, Zhou SD, He XJ. Phylogeny and Taxonomic Revision of the Genus Melanosciadium (Apiaceae), Based on Plastid Genomes and Morphological Evidence. PLANTS (BASEL, SWITZERLAND) 2024;13:907. [PMID: 38592923 PMCID: PMC10974901 DOI: 10.3390/plants13060907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 02/29/2024] [Accepted: 03/13/2024] [Indexed: 04/11/2024]
18
Zhou N, Miao K, Liu C, Jia L, Hu J, Huang Y, Ji Y. Historical biogeography and evolutionary diversification of Lilium (Liliaceae): New insights from plastome phylogenomics. PLANT DIVERSITY 2024;46:219-228. [PMID: 38807906 PMCID: PMC11128834 DOI: 10.1016/j.pld.2023.07.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 07/22/2023] [Accepted: 07/30/2023] [Indexed: 05/30/2024]
19
Zhou J, Wang X, Zhou S, Niu J, Yue J, Liu Z, Downie SR. Circumscription of the East Asia clade (Apiaceae subfamily Apioideae) and the taxonomic placements of several problematic genera. PLANT DIVERSITY 2024;46:206-218. [PMID: 38807902 PMCID: PMC11128858 DOI: 10.1016/j.pld.2023.11.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 11/18/2023] [Accepted: 11/20/2023] [Indexed: 05/30/2024]
20
Liu LJ, Liu CK, Cai J, Deng JJ, He XJ, Zhou SD. The complete plastomes of thirteen Libanotis (Apiaceae, Apioideae) plants: comparative and phylogenetic analyses provide insights into the plastome evolution and taxonomy of Libanotis. BMC PLANT BIOLOGY 2024;24:106. [PMID: 38342898 PMCID: PMC10860227 DOI: 10.1186/s12870-024-04784-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 01/30/2024] [Indexed: 02/13/2024]
21
Song BN, Liu CK, Zhao AQ, Tian RM, Xie DF, Xiao YL, Chen H, Zhou SD, He XJ. Phylogeny and diversification of genus Sanicula L. (Apiaceae): novel insights from plastid phylogenomic analyses. BMC PLANT BIOLOGY 2024;24:70. [PMID: 38263006 PMCID: PMC10807117 DOI: 10.1186/s12870-024-04750-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 01/12/2024] [Indexed: 01/25/2024]
22
Park S, Park S. Intrageneric structural variation in organelle genomes from the genus Dystaenia (Apiaceae): genome rearrangement and mitochondrion-to-plastid DNA transfer. FRONTIERS IN PLANT SCIENCE 2023;14:1283292. [PMID: 38116150 PMCID: PMC10728875 DOI: 10.3389/fpls.2023.1283292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 11/14/2023] [Indexed: 12/21/2023]
23
Yan R, Geng Y, Jia Y, Xiang C, Zhou X, Hu G. Comparative analyses of Linderniaceae plastomes, with implications for its phylogeny and evolution. FRONTIERS IN PLANT SCIENCE 2023;14:1265641. [PMID: 37828930 PMCID: PMC10565954 DOI: 10.3389/fpls.2023.1265641] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 09/01/2023] [Indexed: 10/14/2023]
24
Li H, Wu M, Lai Q, Zhou W, Song C. Complete chloroplast of four Sanicula taxa (Apiaceae) endemic to China: lights into genome structure, comparative analysis, and phylogenetic relationships. BMC PLANT BIOLOGY 2023;23:444. [PMID: 37730528 PMCID: PMC10512634 DOI: 10.1186/s12870-023-04447-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 09/06/2023] [Indexed: 09/22/2023]
25
Sun H, Chu S, Jiang L, Tong Z, Cheng M, Peng H, Huang L. Integrative analysis of chloroplast genome, chemicals, and illustrations in Bencao literature provides insights into the medicinal value of Peucedanum huangshanense. FRONTIERS IN PLANT SCIENCE 2023;14:1179915. [PMID: 37600207 PMCID: PMC10436485 DOI: 10.3389/fpls.2023.1179915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 07/03/2023] [Indexed: 08/22/2023]
26
Zhou J, Niu J, Wang X, Yue J, Zhou S, Liu Z. Plastome evolution in the genus Sium (Apiaceae, Oenantheae) inferred from phylogenomic and comparative analyses. BMC PLANT BIOLOGY 2023;23:368. [PMID: 37488499 PMCID: PMC10367252 DOI: 10.1186/s12870-023-04376-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 07/12/2023] [Indexed: 07/26/2023]
27
Weng L, Jiang Y, Wang Y, Zhang X, Zhou P, Wu M, Li H, Sun H, Chen S. Chloroplast genome characteristics and phylogeny of the sinodielsia clade (apiaceae: apioideae). BMC PLANT BIOLOGY 2023;23:284. [PMID: 37246219 DOI: 10.1186/s12870-023-04271-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 05/07/2023] [Indexed: 05/30/2023]
28
Tian R, Aou X, Song B, Li Z, He X, Zhou S. Plastid Phylogenomic Analyses Reveal a Cryptic Species of Ligusticopsis (Apiaceae, Angiosperms). Int J Mol Sci 2023;24:ijms24087419. [PMID: 37108580 PMCID: PMC10138589 DOI: 10.3390/ijms24087419] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 04/06/2023] [Accepted: 04/14/2023] [Indexed: 04/29/2023]  Open
29
Peng C, Guo XL, Zhou SD, He XJ. Backbone phylogeny and adaptive evolution of Pleurospermum s. l.: New insights from phylogenomic analyses of complete plastome data. FRONTIERS IN PLANT SCIENCE 2023;14:1148303. [PMID: 37063181 PMCID: PMC10101341 DOI: 10.3389/fpls.2023.1148303] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 03/13/2023] [Indexed: 06/19/2023]
30
Ji Y, Landis JB, Yang J, Wang S, Zhou N, Luo Y, Liu H. Phylogeny and evolution of Asparagaceae subfamily Nolinoideae: new insights from plastid phylogenomics. ANNALS OF BOTANY 2023;131:301-312. [PMID: 36434782 PMCID: PMC9992941 DOI: 10.1093/aob/mcac144] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 12/21/2022] [Indexed: 06/16/2023]
31
Xu Y, Liu Y, Yu Z, Jia X. Complete Chloroplast Genome Sequence of the Long Blooming Cultivar Camellia 'Xiari Qixin': Genome Features, Comparative and Phylogenetic Analysis. Genes (Basel) 2023;14:460. [PMID: 36833387 PMCID: PMC9956581 DOI: 10.3390/genes14020460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 02/07/2023] [Accepted: 02/09/2023] [Indexed: 02/16/2023]  Open
32
Qin HH, Cai J, Liu CK, Zhou RX, Price M, Zhou SD, He XJ. The plastid genome of twenty-two species from Ferula, Talassia, and Soranthus: comparative analysis, phylogenetic implications, and adaptive evolution. BMC PLANT BIOLOGY 2023;23:9. [PMID: 36604614 PMCID: PMC9814190 DOI: 10.1186/s12870-022-04027-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
33
Wang Z, Cao L, Liu J, He X. Comparative analysis of the complete plastomes of nine Pimpinella species (Apiaceae) from China. PeerJ 2023;11:e14773. [PMID: 36874977 PMCID: PMC9983424 DOI: 10.7717/peerj.14773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Accepted: 01/03/2023] [Indexed: 03/06/2023]  Open
34
Liu C, Deng J, Zhou R, Song B, Zhou S, He X. Plastid Phylogenomics Provide Evidence to Accept Two New Members of Ligusticopsis (Apiaceae, Angiosperms). Int J Mol Sci 2022;24:ijms24010382. [PMID: 36613825 PMCID: PMC9820081 DOI: 10.3390/ijms24010382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 12/20/2022] [Accepted: 12/22/2022] [Indexed: 12/28/2022]  Open
35
Song B, Liu C, Xie D, Xiao Y, Tian R, Li Z, Zhou S, He X. Plastid Phylogenomic Analyses Reveal the Taxonomic Position of Peucedanum franchetii. PLANTS (BASEL, SWITZERLAND) 2022;12:97. [PMID: 36616226 PMCID: PMC9824613 DOI: 10.3390/plants12010097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 12/19/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
36
Zhang Z, Xie P, Guo Y, Zhou W, Liu E, Yu Y. Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research. Mol Biol Evol 2022;39:6862883. [PMID: 36458838 PMCID: PMC9757696 DOI: 10.1093/molbev/msac261] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 10/28/2022] [Accepted: 11/29/2022] [Indexed: 12/04/2022]  Open
37
Lei JQ, Liu CK, Cai J, Price M, Zhou SD, He XJ. Evidence from Phylogenomics and Morphology Provide Insights into the Phylogeny, Plastome Evolution, and Taxonomy of Kitagawia. PLANTS (BASEL, SWITZERLAND) 2022;11:3275. [PMID: 36501315 PMCID: PMC9740501 DOI: 10.3390/plants11233275] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 11/24/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
38
Cai J, Qin HH, Lei JQ, Liu CK, He XJ, Zhou SD. The phylogeny of Seseli (Apiaceae, Apioideae): insights from molecular and morphological data. BMC PLANT BIOLOGY 2022;22:534. [PMID: 36380268 PMCID: PMC9667662 DOI: 10.1186/s12870-022-03919-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 10/31/2022] [Indexed: 06/16/2023]
39
Xie DF, Xie C, Ren T, Song BN, Zhou SD, He XJ. Plastid phylogenomic insights into relationships, divergence, and evolution of Apiales. PLANTA 2022;256:117. [PMID: 36376499 DOI: 10.1007/s00425-022-04031-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 11/06/2022] [Indexed: 06/16/2023]
40
Chu R, Xu X, Lu Z, Ma Y, Cheng H, Zhu S, Bakker FT, Schranz ME, Wei Z. Plastome-based phylogeny and biogeography of Lactuca L. (Asteraceae) support revised lettuce gene pool categories. FRONTIERS IN PLANT SCIENCE 2022;13:978417. [PMID: 36311071 PMCID: PMC9597326 DOI: 10.3389/fpls.2022.978417] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Accepted: 09/12/2022] [Indexed: 06/16/2023]
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Zhang H, Zhang X, Sun Y, Landis JB, Li L, Hu G, Sun J, Tiamiyu BB, Kuang T, Deng T, Sun H, Wang H. Plastome phylogenomics and biogeography of the subfam. Polygonoideae (Polygonaceae). FRONTIERS IN PLANT SCIENCE 2022;13:893201. [PMID: 36275552 PMCID: PMC9581148 DOI: 10.3389/fpls.2022.893201] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 09/12/2022] [Indexed: 06/16/2023]
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Yang L, Abduraimov O, Tojibaev K, Shomurodov K, Zhang YM, Li WJ. Analysis of complete chloroplast genome sequences and insight into the phylogenetic relationships of Ferula L. BMC Genomics 2022;23:643. [PMID: 36076164 PMCID: PMC9461113 DOI: 10.1186/s12864-022-08868-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 08/30/2022] [Indexed: 11/11/2022]  Open
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Comparative Analysis of the Complete Chloroplast Genomes in Allium Section Bromatorrhiza Species (Amaryllidaceae): Phylogenetic Relationship and Adaptive Evolution. Genes (Basel) 2022;13:genes13071279. [PMID: 35886061 PMCID: PMC9324613 DOI: 10.3390/genes13071279] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 07/15/2022] [Accepted: 07/16/2022] [Indexed: 12/03/2022]  Open
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Li QJ, Liu Y, Wang AH, Chen QF, Wang JM, Peng L, Yang Y. Plastome comparison and phylogenomics of Fagopyrum (Polygonaceae): insights into sequence differences between Fagopyrum and its related taxa. BMC PLANT BIOLOGY 2022;22:339. [PMID: 35831794 PMCID: PMC9281083 DOI: 10.1186/s12870-022-03715-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 06/23/2022] [Indexed: 05/09/2023]
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Wen J, Zhou W, Wu BC, Li HM, Song CF. The complete chloroplast genome of Hydrocotyle pseudoconferta Masamune 1932 (Araliaceae). Mitochondrial DNA B Resour 2022;7:1199-1200. [PMID: 35814182 PMCID: PMC9262372 DOI: 10.1080/23802359.2022.2090292] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
46
Mehravi S, Ranjbar GA, Najafi-Zarrini H, Mirzaghaderi G, Hanifei M, Severn-Ellis AA, Edwards D, Batley J. Karyology and Genome Size Analyses of Iranian Endemic Pimpinella (Apiaceae) Species. FRONTIERS IN PLANT SCIENCE 2022;13:898881. [PMID: 35783941 PMCID: PMC9240749 DOI: 10.3389/fpls.2022.898881] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 05/05/2022] [Indexed: 05/09/2023]
47
Joh HJ, Park HS, Kang JS, Park JY, Yang TJ. The complete plastid genome sequence of Peucedanum hakuunense Nakai (Apiaceae), an endemic and rare species in Korea. Mitochondrial DNA B Resour 2022;7:766-768. [PMID: 35558174 PMCID: PMC9090427 DOI: 10.1080/23802359.2022.2069522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]  Open
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Ren T, Xie D, Peng C, Gui L, Price M, Zhou S, He X. Molecular evolution and phylogenetic relationships of Ligusticum (Apiaceae) inferred from the whole plastome sequences. BMC Ecol Evol 2022;22:55. [PMID: 35501703 PMCID: PMC9063207 DOI: 10.1186/s12862-022-02010-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 04/21/2022] [Indexed: 12/04/2022]  Open
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Complete Chloroplast Genome of Cnidium monnieri (Apiaceae) and Comparisons with Other Tribe Selineae Species. DIVERSITY 2022. [DOI: 10.3390/d14050323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
50
Li ZX, Guo XL, Price M, Zhou SD, He XJ. Phylogenetic position of Ligusticopsis (Apiaceae, Apioideae): evidence from molecular data and carpological characters. AOB PLANTS 2022;14:plac008. [PMID: 35475242 PMCID: PMC9035215 DOI: 10.1093/aobpla/plac008] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 03/02/2022] [Indexed: 05/13/2023]
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