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For: Dayhuff TJ, Atkins JF, Gesteland RF. Characterization of ribosomal frameshift events by protein sequence analysis. J Biol Chem 1986;261:7491-500. [DOI: 10.1016/s0021-9258(17)38419-3] [Citation(s) in RCA: 37] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Springstein BL, Paulo JA, Park H, Henry K, Fleming E, Feder Z, Harper JW, Hochschild A. Systematic analysis of nonprogrammed frameshift suppression in E. coli via translational tiling proteomics. Proc Natl Acad Sci U S A 2024;121:e2317453121. [PMID: 38289956 PMCID: PMC10861913 DOI: 10.1073/pnas.2317453121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 12/20/2023] [Indexed: 02/01/2024]  Open
2
Atkins JF, O’Connor KM, Bhatt PR, Loughran G. From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion. Viruses 2021;13:1251. [PMID: 34199077 PMCID: PMC8310308 DOI: 10.3390/v13071251] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 06/11/2021] [Accepted: 06/19/2021] [Indexed: 01/02/2023]  Open
3
L’Annunziata MF. Flow-cell radionuclide analysis. HANDBOOK OF RADIOACTIVITY ANALYSIS: VOLUME 2 2020:729-820. [DOI: 10.1016/b978-0-12-814395-7.00010-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
4
Atkins JF, Loughran G, Bhatt PR, Firth AE, Baranov PV. Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res 2016;44:7007-78. [PMID: 27436286 PMCID: PMC5009743 DOI: 10.1093/nar/gkw530] [Citation(s) in RCA: 176] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Accepted: 05/26/2016] [Indexed: 12/15/2022]  Open
5
Caliskan N, Peske F, Rodnina MV. Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting. Trends Biochem Sci 2015;40:265-74. [PMID: 25850333 PMCID: PMC7126180 DOI: 10.1016/j.tibs.2015.03.006] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Revised: 03/09/2015] [Accepted: 03/09/2015] [Indexed: 12/19/2022]
6
Characterization and identification of alanine to serine sequence variants in an IgG4 monoclonal antibody produced in mammalian cell lines. J Chromatogr B Analyt Technol Biomed Life Sci 2012;908:1-8. [PMID: 23122394 DOI: 10.1016/j.jchromb.2012.09.023] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2012] [Revised: 09/04/2012] [Accepted: 09/13/2012] [Indexed: 12/17/2022]
7
L'Annunziata MF. Flow-Cell Analysis. HANDBOOK OF RADIOACTIVITY ANALYSIS 2012:1117-1178. [DOI: 10.1016/b978-0-12-384873-4.00017-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
8
Gurvich OL, Näsvall SJ, Baranov PV, Björk GR, Atkins JF. Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL. Nucleic Acids Res 2010;39:3079-92. [PMID: 21177642 PMCID: PMC3082878 DOI: 10.1093/nar/gkq1272] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
9
Atkins JF, Björk GR. A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment. Microbiol Mol Biol Rev 2009;73:178-210. [PMID: 19258537 PMCID: PMC2650885 DOI: 10.1128/mmbr.00010-08] [Citation(s) in RCA: 115] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
10
Characterization of a T7-like lytic bacteriophage (phiSG-JL2) of Salmonella enterica serovar gallinarum biovar gallinarum. Appl Environ Microbiol 2008;74:6970-9. [PMID: 18820072 DOI: 10.1128/aem.01088-08] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
11
Baranov PV, Gesteland RF, Atkins JF. P-site tRNA is a crucial initiator of ribosomal frameshifting. RNA (NEW YORK, N.Y.) 2004;10:221-30. [PMID: 14730021 PMCID: PMC1370534 DOI: 10.1261/rna.5122604] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2003] [Accepted: 10/09/2003] [Indexed: 05/22/2023]
12
Pajunen MI, Kiljunen SJ, Söderholm ME, Skurnik M. Complete genomic sequence of the lytic bacteriophage phiYeO3-12 of Yersinia enterocolitica serotype O:3. J Bacteriol 2001;183:1928-37. [PMID: 11222590 PMCID: PMC95087 DOI: 10.1128/jb.183.6.1928-1937.2001] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
13
Metzler DE, Metzler CM, Sauke DJ. Ribosomes and the Synthesis of Proteins. Biochemistry 2001. [DOI: 10.1016/b978-012492543-4/50032-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Hénaut A, Lisacek F, Nitschké P, Moszer I, Danchin A. Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes. Electrophoresis 1998;19:515-27. [PMID: 9588797 DOI: 10.1002/elps.1150190411] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
15
Arquès DG, Michel CJ. A code in the protein coding genes. Biosystems 1998;44:107-34. [PMID: 9429747 DOI: 10.1016/s0303-2647(97)00049-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
16
Farabaugh PJ. Programmed translational frameshifting. Annu Rev Genet 1996;30:507-28. [PMID: 8982463 DOI: 10.1146/annurev.genet.30.1.507] [Citation(s) in RCA: 176] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
17
Olsthoorn RC, Garde G, Dayhuff T, Atkins JF, Van Duin J. Nucleotide sequence of a single-stranded RNA phage from Pseudomonas aeruginosa: kinship to coliphages and conservation of regulatory RNA structures. Virology 1995;206:611-25. [PMID: 7831817 DOI: 10.1016/s0042-6822(95)80078-6] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
18
Hatfield DL, Levin JG, Rein A, Oroszlan S. Translational suppression in retroviral gene expression. Adv Virus Res 1992;41:193-239. [PMID: 1575083 PMCID: PMC7131785 DOI: 10.1016/s0065-3527(08)60037-8] [Citation(s) in RCA: 89] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
19
Tuohy TM, Thompson S, Gesteland RF, Hughes D, Atkins JF. The role of EF-Tu and other translation components in determining translocation step size. BIOCHIMICA ET BIOPHYSICA ACTA 1990;1050:274-8. [PMID: 2207156 DOI: 10.1016/0167-4781(90)90180-a] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
20
Atkins JF, Weiss RB, Gesteland RF. Ribosome gymnastics--degree of difficulty 9.5, style 10.0. Cell 1990;62:413-23. [PMID: 2199062 PMCID: PMC7133308 DOI: 10.1016/0092-8674(90)90007-2] [Citation(s) in RCA: 199] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
21
Hatfield DL, Smith DW, Lee BJ, Worland PJ, Oroszlan S. Structure and function of suppressor tRNAs in higher eukaryotes. Crit Rev Biochem Mol Biol 1990;25:71-96. [PMID: 2183969 DOI: 10.3109/10409239009090606] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
22
Weiss RB, Dunn DM, Atkins JF, Gesteland RF. Ribosomal frameshifting from -2 to +50 nucleotides. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1990;39:159-83. [PMID: 2247607 DOI: 10.1016/s0079-6603(08)60626-1] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
23
O'Mahony DJ, Hughes D, Thompson S, Atkins JF. Suppression of a -1 frameshift mutation by a recessive tRNA suppressor which causes doublet decoding. J Bacteriol 1989;171:3824-30. [PMID: 2472379 PMCID: PMC210131 DOI: 10.1128/jb.171.7.3824-3830.1989] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
24
Condreay JP, Wright SE, Molineux IJ. Nucleotide sequence and complementation studies of the gene 10 region of bacteriophage T3. J Mol Biol 1989;207:555-61. [PMID: 2760923 DOI: 10.1016/0022-2836(89)90464-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
25
Mutants of translational components that alter reading frame by two steps forward or one step back. J Biol Chem 1988. [DOI: 10.1016/s0021-9258(19)81328-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
26
Weiss R, Lindsley D, Falahee B, Gallant J. On the mechanism of ribosomal frameshifting at hungry codons. J Mol Biol 1988;203:403-10. [PMID: 3199440 DOI: 10.1016/0022-2836(88)90008-3] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
27
Wilson PG, Culbertson MR. SUF12 suppressor protein of yeast. A fusion protein related to the EF-1 family of elongation factors. J Mol Biol 1988;199:559-73. [PMID: 3280807 DOI: 10.1016/0022-2836(88)90301-4] [Citation(s) in RCA: 99] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
28
Buckley KJ, Hayashi M. Role of premature translational termination in the regulation of expression of the phi X174 lysis gene. J Mol Biol 1987;198:599-607. [PMID: 2963134 DOI: 10.1016/0022-2836(87)90203-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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