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For: Das G, Henning D, Reddy R. Structure, organization, and transcription of Drosophila U6 small nuclear RNA genes. J Biol Chem 1987;262:1187-93. [DOI: 10.1016/s0021-9258(19)75769-x] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Shen JY, Mao FH, Wang Q, Ou PP, Liu JK, Zhao Q, He QL. Efficient genome editing using CRISPR/Cas9 technology and its application for identifying Sesquiterpene synthases involved in the biosynthesis of Steperoxides in Steccherinum ochraceum. Fungal Genet Biol 2024;175:103944. [PMID: 39592077 DOI: 10.1016/j.fgb.2024.103944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 11/20/2024] [Accepted: 11/22/2024] [Indexed: 11/28/2024]
2
Zhang Z, Wang J, Li J, Liu X, Liu L, Zhao C, Tao W, Wang D, Wei J. Establishment of an Integrated CRISPR/Cas9 Plasmid System for Simple and Efficient Genome Editing in Medaka In Vitro and In Vivo. BIOLOGY 2023;12:biology12020336. [PMID: 36829610 PMCID: PMC9953409 DOI: 10.3390/biology12020336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/14/2023] [Accepted: 02/15/2023] [Indexed: 02/25/2023]
3
Guo R, Liu T, Guo C, Chen G, Fan J, Zhang Q. Carotenoid biosynthesis is associated with low-temperature adaptation in Rhodosporidium kratochvilovae. BMC Microbiol 2022;22:319. [PMID: 36564716 PMCID: PMC9789556 DOI: 10.1186/s12866-022-02728-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 12/08/2022] [Indexed: 12/25/2022]  Open
4
Garcia-Marques J, Espinosa-Medina I, Ku KY, Yang CP, Koyama M, Yu HH, Lee T. A programmable sequence of reporters for lineage analysis. Nat Neurosci 2020;23:1618-1628. [PMID: 32719561 DOI: 10.1038/s41593-020-0676-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 06/19/2020] [Indexed: 12/22/2022]
5
Canzler S, Stadler PF, Hertel J. U6 snRNA intron insertion occurred multiple times during fungi evolution. RNA Biol 2016;13:119-27. [PMID: 26828373 DOI: 10.1080/15476286.2015.1132139] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
6
Optimization of methods for the genetic modification of human T cells. Immunol Cell Biol 2015;93:896-908. [PMID: 26027856 PMCID: PMC4659746 DOI: 10.1038/icb.2015.59] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Revised: 05/06/2015] [Accepted: 05/13/2015] [Indexed: 12/18/2022]
7
Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9. Proc Natl Acad Sci U S A 2013;110:19012-7. [PMID: 24191015 DOI: 10.1073/pnas.1318481110] [Citation(s) in RCA: 302] [Impact Index Per Article: 25.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
8
Verma N, Hung KH, Kang JJ, Barakat NH, Stumph WE. Differential utilization of TATA box-binding protein (TBP) and TBP-related factor 1 (TRF1) at different classes of RNA polymerase III promoters. J Biol Chem 2013;288:27564-27570. [PMID: 23955442 DOI: 10.1074/jbc.c113.503094] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
9
Hung KH, Stumph WE. Regulation of snRNA gene expression by the Drosophila melanogaster small nuclear RNA activating protein complex (DmSNAPc). Crit Rev Biochem Mol Biol 2010;46:11-26. [PMID: 20925482 DOI: 10.3109/10409238.2010.518136] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
10
Of mice and men: human RNA polymerase III promoter U6 is more efficient than its murine homologue for shRNA expression from a lentiviral vector in both human and murine progenitor cells. Exp Hematol 2010;38:792-7. [PMID: 20685233 DOI: 10.1016/j.exphem.2010.05.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2010] [Revised: 04/27/2010] [Accepted: 05/17/2010] [Indexed: 11/22/2022]
11
Kim MK, Kang YS, Lai HT, Barakat NH, Magante D, Stumph WE. Identification of SNAPc subunit domains that interact with specific nucleotide positions in the U1 and U6 gene promoters. Mol Cell Biol 2010;30:2411-23. [PMID: 20212087 PMCID: PMC2863707 DOI: 10.1128/mcb.01508-09] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2009] [Revised: 12/15/2009] [Accepted: 02/25/2010] [Indexed: 11/20/2022]  Open
12
Boonanuntanasarn S, Panyim S, Yoshizaki G. Usage of putative zebrafish U6 promoters to express shRNA in Nile tilapia and shrimp cell extracts. Transgenic Res 2009;18:323-5. [PMID: 19225901 DOI: 10.1007/s11248-009-9249-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2008] [Accepted: 01/21/2009] [Indexed: 11/30/2022]
13
Boonanuntanasarn S, Panyim S, Yoshizaki G. Characterization and organization of the U6 snRNA gene in zebrafish and usage of their promoters to express short hairpin RNA. Mar Genomics 2008;1:115-21. [PMID: 21798162 DOI: 10.1016/j.margen.2008.10.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2008] [Accepted: 10/23/2008] [Indexed: 10/21/2022]
14
Barakat NH, Stumph WE. TBP recruitment to the U1 snRNA gene promoter is disrupted by substituting a U6 proximal sequence element A (PSEA) for the U1 PSEA. FEBS Lett 2008;582:2413-6. [PMID: 18547530 DOI: 10.1016/j.febslet.2008.06.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2008] [Revised: 05/28/2008] [Accepted: 06/01/2008] [Indexed: 11/19/2022]
15
Hernandez G, Valafar F, Stumph WE. Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity. Nucleic Acids Res 2006;35:21-34. [PMID: 17148477 PMCID: PMC1761439 DOI: 10.1093/nar/gkl982] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Li M, Rohrer B. Gene silencing in Xenopus laevis by DNA vector-based RNA interference and transgenesis. Cell Res 2006;16:99-105. [PMID: 16467881 DOI: 10.1038/sj.cr.7310013] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]  Open
17
Wakiyama M, Matsumoto T, Yokoyama S. Drosophila U6 promoter-driven short hairpin RNAs effectively induce RNA interference in Schneider 2 cells. Biochem Biophys Res Commun 2005;331:1163-70. [PMID: 15882998 DOI: 10.1016/j.bbrc.2005.03.240] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2005] [Indexed: 10/25/2022]
18
Otake LR, Scamborova P, Hashimoto C, Steitz JA. The divergent U12-type spliceosome is required for pre-mRNA splicing and is essential for development in Drosophila. Mol Cell 2002;9:439-46. [PMID: 11864616 DOI: 10.1016/s1097-2765(02)00441-0] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
19
McNamara-Schroeder KJ, Hennessey RF, Harding GA, Jensen RC, Stumph WE. The Drosophila U1 and U6 gene proximal sequence elements act as important determinants of the RNA polymerase specificity of small nuclear RNA gene promoters in vitro and in vivo. J Biol Chem 2001;276:31786-92. [PMID: 11431466 DOI: 10.1074/jbc.m101273200] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
20
Mount SM, Salz HK. Pre-messenger RNA processing factors in the Drosophila genome. J Cell Biol 2000;150:F37-44. [PMID: 10908584 PMCID: PMC2180228 DOI: 10.1083/jcb.150.2.f37] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
21
Takada S, Lis JT, Zhou S, Tjian R. A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell 2000;101:459-69. [PMID: 10850489 DOI: 10.1016/s0092-8674(00)80857-0] [Citation(s) in RCA: 92] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
22
Müller J, Benecke BJ. Analysis of transcription factors binding to the human 7SL RNA gene promoter. Biochem Cell Biol 1999. [DOI: 10.1139/o99-051] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
23
Wang Y, Stumph WE. Identification and topological arrangement of Drosophila proximal sequence element (PSE)-binding protein subunits that contact the PSEs of U1 and U6 small nuclear RNA genes. Mol Cell Biol 1998;18:1570-9. [PMID: 9488474 PMCID: PMC108872 DOI: 10.1128/mcb.18.3.1570] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
24
Jensen RC, Wang Y, Hardin SB, Stumph WE. The proximal sequence element (PSE) plays a major role in establishing the RNA polymerase specificity of Drosophila U-snRNA genes. Nucleic Acids Res 1998;26:616-22. [PMID: 9421524 PMCID: PMC147272 DOI: 10.1093/nar/26.2.616] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
25
Su Y, Song Y, Wang Y, Jessop L, Zhan L, Stumph WE. Characterization of a Drosophila proximal-sequence-element-binding protein involved in transcription of small nuclear RNA genes. EUROPEAN JOURNAL OF BIOCHEMISTRY 1997;248:231-7. [PMID: 9310383 DOI: 10.1111/j.1432-1033.1997.t01-1-00231.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
26
Sakallah SA, Norton DR, Zhang W, Marzluff WF. Isolation and characterization of the tandemly repeated U6 genes from the sea urchin Strongylocentrotus purpuratus. BIOCHIMICA ET BIOPHYSICA ACTA 1994;1218:439-42. [PMID: 8049270 DOI: 10.1016/0167-4781(94)90201-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
27
Garber ME, Vilalta A, Johnson DL. Induction of Drosophila RNA polymerase III gene expression by the phorbol ester 12-O-tetradecanoylphorbol-13-acetate (TPA) is mediated by transcription factor IIIB. Mol Cell Biol 1994;14:339-47. [PMID: 8264601 PMCID: PMC358383 DOI: 10.1128/mcb.14.1.339-347.1994] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
28
Guerineau F, Waugh R. The U6 small nuclear RNA gene family of potato. PLANT MOLECULAR BIOLOGY 1993;22:807-818. [PMID: 8358031 DOI: 10.1007/bf00027367] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
29
RNA polymerase III transcription of genes that lack internal control regions. BIOCHIMICA ET BIOPHYSICA ACTA 1991;1088:1-9. [PMID: 1989689 DOI: 10.1016/0167-4781(91)90146-d] [Citation(s) in RCA: 58] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
30
Moon IS, Krause MO. Common RNA polymerase I, II, and III upstream elements in mouse 7SK gene locus revealed by the inverse polymerase chain reaction. DNA Cell Biol 1991;10:23-32. [PMID: 1671331 DOI: 10.1089/dna.1991.10.23] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
31
Lührmann R, Kastner B, Bach M. Structure of spliceosomal snRNPs and their role in pre-mRNA splicing. BIOCHIMICA ET BIOPHYSICA ACTA 1990;1087:265-92. [PMID: 2147394 DOI: 10.1016/0167-4781(90)90001-i] [Citation(s) in RCA: 293] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
32
Bredow S, Kleinert H, Benecke BJ. Sequence and factor requirements for faithful in vitro transcription of human 7SL DNA. Gene 1990;86:217-25. [PMID: 2323574 DOI: 10.1016/0378-1119(90)90282-v] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
33
Zieve GW, Sauterer RA. Cell biology of the snRNP particles. Crit Rev Biochem Mol Biol 1990;25:1-46. [PMID: 2138975 DOI: 10.3109/10409239009090604] [Citation(s) in RCA: 121] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
34
Yuan Y, Reddy R. Genes for human U3 small nucleolar RNA contain highly conserved flanking sequences. BIOCHIMICA ET BIOPHYSICA ACTA 1989;1008:14-22. [PMID: 2719960 DOI: 10.1016/0167-4781(89)90164-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
35
Transcription of Xenopus selenocysteine tRNASer (formerly designated opal suppressor phosphoserine tRNA) gene is directed by multiple 5′-extragenic regulatory elements. J Biol Chem 1989. [DOI: 10.1016/s0021-9258(18)60586-1] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
36
Tani T, Ohshima Y. The gene for the U6 small nuclear RNA in fission yeast has an intron. Nature 1989;337:87-90. [PMID: 2909894 DOI: 10.1038/337087a0] [Citation(s) in RCA: 97] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
37
Yuan Y, Reddy R. Organization of spliceosomal U6 snRNA genes in the mouse genome. Mol Biol Rep 1989;13:159-64. [PMID: 3255051 DOI: 10.1007/bf00444312] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
38
Reddy R. Compilation of small nuclear RNA sequences. Methods Enzymol 1989;180:521-32. [PMID: 2693909 DOI: 10.1016/0076-6879(89)80121-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
39
Transcription of a U6 small nuclear RNA gene in vitro. Transcription of a mouse U6 small nuclear RNA gene in vitro by RNA polymerase III is dependent on transcription factor(s) different from transcription factors IIIA, IIIB, and IIIC. J Biol Chem 1988. [DOI: 10.1016/s0021-9258(18)37545-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
40
Brow DA, Guthrie C. Spliceosomal RNA U6 is remarkably conserved from yeast to mammals. Nature 1988;334:213-8. [PMID: 3041282 DOI: 10.1038/334213a0] [Citation(s) in RCA: 326] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
41
Kunkel GR, Pederson T. Upstream elements required for efficient transcription of a human U6 RNA gene resemble those of U1 and U2 genes even though a different polymerase is used. Genes Dev 1988;2:196-204. [PMID: 3360322 DOI: 10.1101/gad.2.2.196] [Citation(s) in RCA: 133] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
42
Cheng SC, Abelson J. Spliceosome assembly in yeast. Genes Dev 1987;1:1014-27. [PMID: 2962902 DOI: 10.1101/gad.1.9.1014] [Citation(s) in RCA: 312] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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