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For: Herrick J, Jun S, Bechhoefer J, Bensimon A. Kinetic model of DNA replication in eukaryotic organisms. J Mol Biol 2002;320:741-50. [PMID: 12095252 DOI: 10.1016/s0022-2836(02)00522-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Number Cited by Other Article(s)
1
Berkemeier F, Cook PR, Boemo MA. DNA replication timing reveals genome-wide features of transcription and fragility. Nat Commun 2025;16:4658. [PMID: 40389432 PMCID: PMC12089344 DOI: 10.1038/s41467-025-59991-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Accepted: 05/12/2025] [Indexed: 05/21/2025]  Open
2
Korsak S, Banecki KH, Buka K, Górski PJ, Plewczynski D. Chromatin as a Coevolutionary Graph: Modeling the Interplay of Replication with Chromatin Dynamics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.31.646315. [PMID: 40236036 PMCID: PMC11996380 DOI: 10.1101/2025.03.31.646315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/17/2025]
3
Haccard O, Ciardo D, Narrissamprakash H, Bronchain O, Kumagai A, Dunphy WG, Goldar A, Marheineke K. Rif1 restrains the rate of replication origin firing in Xenopus laevis. Commun Biol 2023;6:788. [PMID: 37516798 PMCID: PMC10387115 DOI: 10.1038/s42003-023-05172-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 07/24/2023] [Indexed: 07/31/2023]  Open
4
Birtwistle MR. Modeling the Dynamics of Eukaryotic DNA Synthesis in Remembrance of Tunde Ogunnaike. Ind Eng Chem Res 2023. [DOI: 10.1021/acs.iecr.2c02856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
5
Rhind N. f = m*a: A Framework for Investigating the Regulation of Replication Timing. Genes (Basel) 2022;13:249. [PMID: 35205293 PMCID: PMC8872135 DOI: 10.3390/genes13020249] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 01/21/2022] [Accepted: 01/24/2022] [Indexed: 12/04/2022]  Open
6
Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint. Genes (Basel) 2021;12:genes12081224. [PMID: 34440398 PMCID: PMC8394201 DOI: 10.3390/genes12081224] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 08/02/2021] [Accepted: 08/04/2021] [Indexed: 12/11/2022]  Open
7
Dynamics of DNA replication in a eukaryotic cell. Proc Natl Acad Sci U S A 2019;116:4973-4982. [PMID: 30718387 PMCID: PMC6421431 DOI: 10.1073/pnas.1818680116] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
8
Ciardo D, Goldar A, Marheineke K. On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway. Genes (Basel) 2019;10:E94. [PMID: 30700024 PMCID: PMC6410103 DOI: 10.3390/genes10020094] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 01/23/2019] [Accepted: 01/25/2019] [Indexed: 12/12/2022]  Open
9
Arbona JM, Goldar A, Hyrien O, Arneodo A, Audit B. The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation. eLife 2018;7:35192. [PMID: 29856315 PMCID: PMC6033540 DOI: 10.7554/elife.35192] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 05/31/2018] [Indexed: 01/22/2023]  Open
10
Zhang Q, Bassetti F, Gherardi M, Lagomarsino MC. Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics. Nucleic Acids Res 2017;45:8190-8198. [PMID: 28854733 PMCID: PMC5737480 DOI: 10.1093/nar/gkx556] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 06/19/2017] [Indexed: 11/13/2022]  Open
11
Néda Z, Járai-Szabó F, Boda S. Cell-size distribution and scaling in a one-dimensional Kolmogorov-Johnson-Mehl-Avrami lattice model with continuous nucleation. Phys Rev E 2017;96:042145. [PMID: 29347594 DOI: 10.1103/physreve.96.042145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Indexed: 06/07/2023]
12
Deciphering DNA replication dynamics in eukaryotic cell populations in relation with their averaged chromatin conformations. Sci Rep 2016;6:22469. [PMID: 26935043 PMCID: PMC4776152 DOI: 10.1038/srep22469] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 02/16/2016] [Indexed: 12/16/2022]  Open
13
Platel M, Goldar A, Wiggins JM, Barbosa P, Libeau P, Priam P, Narassimprakash H, Grodzenski X, Marheineke K. Tight Chk1 Levels Control Replication Cluster Activation in Xenopus. PLoS One 2015;10:e0129090. [PMID: 26046346 PMCID: PMC4457610 DOI: 10.1371/journal.pone.0129090] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Accepted: 05/05/2015] [Indexed: 12/03/2022]  Open
14
Gindin Y, Meltzer PS, Bilke S. Replicon: a software to accurately predict DNA replication timing in metazoan cells. Front Genet 2014;5:378. [PMID: 25404939 PMCID: PMC4217517 DOI: 10.3389/fgene.2014.00378] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Accepted: 10/13/2014] [Indexed: 02/05/2023]  Open
15
Baram J, Weissman H, Rybtchinski B. Supramolecular Polymer Transformation: A Kinetic Study. J Phys Chem B 2014;118:12068-73. [DOI: 10.1021/jp507945t] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
16
Gindin Y, Valenzuela MS, Aladjem MI, Meltzer PS, Bilke S. A chromatin structure-based model accurately predicts DNA replication timing in human cells. Mol Syst Biol 2014;10:722. [PMID: 24682507 PMCID: PMC4017678 DOI: 10.1002/msb.134859] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
17
Baker A, Bechhoefer J. Inferring the spatiotemporal DNA replication program from noisy data. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;89:032703. [PMID: 24730871 DOI: 10.1103/physreve.89.032703] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Indexed: 06/03/2023]
18
Masai H. A personal reflection on the replicon theory: from R1 plasmid to replication timing regulation in human cells. J Mol Biol 2013;425:4663-72. [PMID: 23579064 DOI: 10.1016/j.jmb.2013.03.039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2013] [Revised: 03/15/2013] [Accepted: 03/21/2013] [Indexed: 01/09/2023]
19
Hyrien O, Rappailles A, Guilbaud G, Baker A, Chen CL, Goldar A, Petryk N, Kahli M, Ma E, d'Aubenton-Carafa Y, Audit B, Thermes C, Arneodo A. From simple bacterial and archaeal replicons to replication N/U-domains. J Mol Biol 2013;425:4673-89. [PMID: 24095859 DOI: 10.1016/j.jmb.2013.09.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Revised: 09/15/2013] [Accepted: 09/19/2013] [Indexed: 10/26/2022]
20
Técher H, Koundrioukoff S, Azar D, Wilhelm T, Carignon S, Brison O, Debatisse M, Le Tallec B. Replication dynamics: biases and robustness of DNA fiber analysis. J Mol Biol 2013;425:4845-55. [PMID: 23557832 DOI: 10.1016/j.jmb.2013.03.040] [Citation(s) in RCA: 101] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2013] [Revised: 03/22/2013] [Accepted: 03/25/2013] [Indexed: 12/11/2022]
21
Loveland AB, Habuchi S, Walter JC, van Oijen AM. A general approach to break the concentration barrier in single-molecule imaging. Nat Methods 2012;9:987-92. [PMID: 22961247 PMCID: PMC3610324 DOI: 10.1038/nmeth.2174] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2012] [Accepted: 08/09/2012] [Indexed: 02/04/2023]
22
Bechhoefer J, Rhind N. Replication timing and its emergence from stochastic processes. Trends Genet 2012;28:374-81. [PMID: 22520729 DOI: 10.1016/j.tig.2012.03.011] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2012] [Revised: 03/21/2012] [Accepted: 03/22/2012] [Indexed: 01/28/2023]
23
Modeling inhomogeneous DNA replication kinetics. PLoS One 2012;7:e32053. [PMID: 22412853 PMCID: PMC3296702 DOI: 10.1371/journal.pone.0032053] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 01/20/2012] [Indexed: 11/19/2022]  Open
24
Karschau J, Blow JJ, de Moura APS. Optimal placement of origins for DNA replication. PHYSICAL REVIEW LETTERS 2012;108:058101. [PMID: 22400964 PMCID: PMC3476000 DOI: 10.1103/physrevlett.108.058101] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2011] [Indexed: 05/31/2023]
25
Study of the interaction of DNA and histones by spin-stretching and droplet evaporation. CHINESE SCIENCE BULLETIN-CHINESE 2011. [DOI: 10.1007/s11434-011-4422-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
26
Aletti G, Bongiorno EG, Capasso V. Integration in a dynamical stochastic geometric framework. ESAIM-PROBAB STAT 2011. [DOI: 10.1051/ps/2010009] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
27
Hirano K, Yoshida Y, Ishido T, Wada Y, Moriya N, Yamazaki N, Mizushina Y, Baba Y, Ishikawa M. Consecutive incorporation of fluorophore-labeled nucleotides by mammalian DNA polymerase beta. Anal Biochem 2010;405:160-7. [PMID: 20570644 DOI: 10.1016/j.ab.2010.06.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2010] [Revised: 05/31/2010] [Accepted: 06/02/2010] [Indexed: 11/19/2022]
28
S-phase progression in mammalian cells: modelling the influence of nuclear organization. Chromosome Res 2010;18:163-78. [PMID: 20155315 DOI: 10.1007/s10577-010-9114-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
29
Hyrien O, Goldar A. Mathematical modelling of eukaryotic DNA replication. Chromosome Res 2010;18:147-61. [PMID: 20205354 DOI: 10.1007/s10577-009-9092-4] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
30
Gauthier MG, Herrick J, Bechhoefer J. Defects and DNA replication. PHYSICAL REVIEW LETTERS 2010;104:218104. [PMID: 20867141 DOI: 10.1103/physrevlett.104.218104] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2009] [Indexed: 05/29/2023]
31
Herrick J. The dynamic replicon: adapting to a changing cellular environment. Bioessays 2010;32:153-64. [DOI: 10.1002/bies.200900129] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
32
Universal temporal profile of replication origin activation in eukaryotes. PLoS One 2009;4:e5899. [PMID: 19521533 PMCID: PMC2690853 DOI: 10.1371/journal.pone.0005899] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2009] [Accepted: 05/20/2009] [Indexed: 01/25/2023]  Open
33
Correction for Lygeros et al., Stochastic hybrid modeling of DNA replication across a complete genome. Proc Natl Acad Sci U S A 2009. [DOI: 10.1073/pnas.0905246106] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
34
Gauthier MG, Bechhoefer J. Control of DNA replication by anomalous reaction-diffusion kinetics. PHYSICAL REVIEW LETTERS 2009;102:158104. [PMID: 19518676 DOI: 10.1103/physrevlett.102.158104] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2008] [Indexed: 05/27/2023]
35
Yang SCH, Gauthier MG, Bechhoefer J. Computational methods to study kinetics of DNA replication. Methods Mol Biol 2009;521:555-73. [PMID: 19563129 DOI: 10.1007/978-1-60327-815-7_32] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
36
Herrick J, Bensimon A. Introduction to molecular combing: genomics, DNA replication, and cancer. Methods Mol Biol 2009;521:71-101. [PMID: 19563102 DOI: 10.1007/978-1-60327-815-7_5] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
37
Yang SCH, Bechhoefer J. How Xenopus laevis embryos replicate reliably: investigating the random-completion problem. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008;78:041917. [PMID: 18999465 DOI: 10.1103/physreve.78.041917] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2008] [Indexed: 05/27/2023]
38
Goldar A, Labit H, Marheineke K, Hyrien O. A dynamic stochastic model for DNA replication initiation in early embryos. PLoS One 2008;3:e2919. [PMID: 18682801 PMCID: PMC2488399 DOI: 10.1371/journal.pone.0002919] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2008] [Accepted: 07/16/2008] [Indexed: 12/14/2022]  Open
39
Sclafani RA, Holzen TM. Cell cycle regulation of DNA replication. Annu Rev Genet 2008;41:237-80. [PMID: 17630848 PMCID: PMC2292467 DOI: 10.1146/annurev.genet.41.110306.130308] [Citation(s) in RCA: 316] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
40
Montagnoli A, Valsasina B, Croci V, Menichincheri M, Rainoldi S, Marchesi V, Tibolla M, Tenca P, Brotherton D, Albanese C, Patton V, Alzani R, Ciavolella A, Sola F, Molinari A, Volpi D, Avanzi N, Fiorentini F, Cattoni M, Healy S, Ballinari D, Pesenti E, Isacchi A, Moll J, Bensimon A, Vanotti E, Santocanale C. A Cdc7 kinase inhibitor restricts initiation of DNA replication and has antitumor activity. Nat Chem Biol 2008;4:357-65. [PMID: 18469809 DOI: 10.1038/nchembio.90] [Citation(s) in RCA: 167] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2008] [Accepted: 04/11/2008] [Indexed: 12/30/2022]
41
Herrick J, Bensimon A. Global regulation of genome duplication in eukaryotes: an overview from the epifluorescence microscope. Chromosoma 2008;117:243-60. [PMID: 18197411 DOI: 10.1007/s00412-007-0145-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2007] [Revised: 12/14/2007] [Accepted: 12/17/2007] [Indexed: 01/15/2023]
42
Czajkowsky DM, Liu J, Hamlin JL, Shao Z. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. J Mol Biol 2007;375:12-9. [PMID: 17999930 DOI: 10.1016/j.jmb.2007.10.046] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2007] [Revised: 10/05/2007] [Accepted: 10/16/2007] [Indexed: 01/24/2023]
43
Herrick J, Sclavi B. Ribonucleotide reductase and the regulation of DNA replication: an old story and an ancient heritage. Mol Microbiol 2007;63:22-34. [PMID: 17229208 DOI: 10.1111/j.1365-2958.2006.05493.x] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
44
Bechhoefer J, Marshall B. How Xenopus laevis replicates DNA reliably even though its origins of replication are located and initiated stochastically. PHYSICAL REVIEW LETTERS 2007;98:098105. [PMID: 17359202 DOI: 10.1103/physrevlett.98.098105] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2006] [Indexed: 05/14/2023]
45
Rhind N. DNA replication timing: random thoughts about origin firing. Nat Cell Biol 2007;8:1313-6. [PMID: 17139278 PMCID: PMC2861037 DOI: 10.1038/ncb1206-1313] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
46
O'Malley L, Basham J, Yasi JA, Korniss G, Allstadt A, Caraco T. Invasive advance of an advantageous mutation: Nucleation theory. Theor Popul Biol 2006;70:464-78. [PMID: 16916527 DOI: 10.1016/j.tpb.2006.06.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2005] [Revised: 06/15/2006] [Accepted: 06/19/2006] [Indexed: 11/19/2022]
47
Zhang H, Bechhoefer J. Reconstructing DNA replication kinetics from small DNA fragments. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006;73:051903. [PMID: 16802963 DOI: 10.1103/physreve.73.051903] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2006] [Indexed: 05/10/2023]
48
Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N. DNA replication origins fire stochastically in fission yeast. Mol Biol Cell 2005;17:308-16. [PMID: 16251353 PMCID: PMC1345668 DOI: 10.1091/mbc.e05-07-0657] [Citation(s) in RCA: 159] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Korniss G, Caraco T. Spatial dynamics of invasion: the geometry of introduced species. J Theor Biol 2005;233:137-50. [PMID: 15615627 DOI: 10.1016/j.jtbi.2004.09.018] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2003] [Revised: 09/16/2004] [Accepted: 09/27/2004] [Indexed: 11/29/2022]
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Bhalla US. Models of cell signaling pathways. Curr Opin Genet Dev 2005;14:375-81. [PMID: 15261653 DOI: 10.1016/j.gde.2004.05.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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