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Moriyama Y, Takeda K. Critical Temperature of Secondary Structural Change of Myoglobin in Thermal Denaturation up to 130 °C and Effect of Sodium Dodecyl Sulfate on the Change. J Phys Chem B 2010; 114:2430-4. [DOI: 10.1021/jp908700j] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Yoshiko Moriyama
- Department of Applied Chemistry and Biotechnology, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
| | - Kunio Takeda
- Department of Applied Chemistry and Biotechnology, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama 700-0005, Japan
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Peng XB, Huang JW, Mei WJ, Ji LN. Synthesis of Chiral Amino Acid-Linked Porphyrin Protein Supramolecular Complexes and Their Novel Induced Circular Dichroism. ACTA ACUST UNITED AC 2008. [DOI: 10.1080/00945710009351799] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Xiao-Bin Peng
- a Department of Chemistry , Zhongshan University , Guangzhou, 510275, P. R. China
| | - Jin-Wang Huang
- a Department of Chemistry , Zhongshan University , Guangzhou, 510275, P. R. China
| | - Wen-Jie Mei
- a Department of Chemistry , Zhongshan University , Guangzhou, 510275, P. R. China
| | - Liang-Nian Ji
- a Department of Chemistry , Zhongshan University , Guangzhou, 510275, P. R. China
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Ulmer DD, Vallee BL. Extrinsic cotton effects and the mechanism of enzyme action. ADVANCES IN ENZYMOLOGY AND RELATED AREAS OF MOLECULAR BIOLOGY 2006; 27:37-104. [PMID: 4303033 DOI: 10.1002/9780470122723.ch2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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4
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Influence of counterion radius on the polyelectrolyte behavior of synthetic polypeptide solutions. Biopolymers 2004. [DOI: 10.1002/bip.1965.360030505] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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5
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Liu HY, Huang JW, Tian X, Jiao XD, Luo GT, Ji LN. The synthesis and spectroscopic characterization of a chiral zinc(II) porphyrin dimer containing an amino acid bridge: model complexes for the induced circular dichroism of porphyrin protein supramolecules. Inorganica Chim Acta 1998. [DOI: 10.1016/s0020-1693(97)05928-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Furusho Y, Kimura T, Mizuno Y, Aida T. Chirality-Memory Molecule: A D2-Symmetric Fully Substituted Porphyrin as a Conceptually New Chirality Sensor. J Am Chem Soc 1997. [DOI: 10.1021/ja970431q] [Citation(s) in RCA: 131] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yoshio Furusho
- Department of Chemistry and Biotechnology Graduate School of Engineering The University of Tokyo Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Takayuki Kimura
- Department of Chemistry and Biotechnology Graduate School of Engineering The University of Tokyo Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Yukitami Mizuno
- Department of Chemistry and Biotechnology Graduate School of Engineering The University of Tokyo Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Takuzo Aida
- Department of Chemistry and Biotechnology Graduate School of Engineering The University of Tokyo Hongo, Bunkyo-ku, Tokyo 113, Japan
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PERUTZ MF, BOLTON W, DIAMOND R, MUIRHEAD H, WATSON HC. STRUCTURE OF HAEMOGLOBIN. AN X-RAY EXAMINATION OF REDUCED HORSE HAEMOGLOBIN. Nature 1996; 203:687-90. [PMID: 14207261 DOI: 10.1038/203687a0] [Citation(s) in RCA: 108] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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8
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SAMEJIMA T, YANG JT. OPTICAL ROTATORY DISPERSION OF SPERM-WHALE MYOGLOBIN AND ITS DERIVATIVES. J Mol Biol 1996; 8:863-71. [PMID: 14187410 DOI: 10.1016/s0022-2836(64)80167-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Matile S, Berova N, Nakanishi K, Fleischhauer J, Woody RW. Structural Studies by Exciton Coupled Circular Dichroism over a Large Distance: Porphyrin Derivatives of Steroids, Dimeric Steroids, and Brevetoxin B. J Am Chem Soc 1996. [DOI: 10.1021/ja960126p] [Citation(s) in RCA: 201] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stefan Matile
- Contribution from the Department of Chemistry, Columbia University, New York, New York 10027, Institut für Organische Chemie, RWTH Aachen, 52074 Aachen, Germany, and Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870
| | - Nina Berova
- Contribution from the Department of Chemistry, Columbia University, New York, New York 10027, Institut für Organische Chemie, RWTH Aachen, 52074 Aachen, Germany, and Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870
| | - Koji Nakanishi
- Contribution from the Department of Chemistry, Columbia University, New York, New York 10027, Institut für Organische Chemie, RWTH Aachen, 52074 Aachen, Germany, and Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870
| | - Jörg Fleischhauer
- Contribution from the Department of Chemistry, Columbia University, New York, New York 10027, Institut für Organische Chemie, RWTH Aachen, 52074 Aachen, Germany, and Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870
| | - Robert W. Woody
- Contribution from the Department of Chemistry, Columbia University, New York, New York 10027, Institut für Organische Chemie, RWTH Aachen, 52074 Aachen, Germany, and Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870
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Hashimoto C, Muramatsu I. Synthesis and Circular Dichroism Spectra of Sperm Whale Myoglobin-(57-96)-Tetracontapeptide. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1993. [DOI: 10.1246/bcsj.66.181] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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12
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Ikeda S, Nezu T, Ebert G. Induced CD and interaction of some porphyrin derivatives with ?-helical polypeptides in aqueous solutions. Biopolymers 1991. [DOI: 10.1002/bip.360311103] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Secondary structure change of myoglobin induced by sodium dodecyl sulfate and its kinetic aspects. J Colloid Interface Sci 1988. [DOI: 10.1016/0021-9797(88)90079-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Kliger DS, Lewis JW. Recent advances in time resolved circular dichroism spectroscopy. ACTA ACUST UNITED AC 1987. [DOI: 10.1007/bf03055509] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Nakano M, Iwamaru H, Tobita T, Yang JT. Influence of hemin on the conformation of cyanogen bromide-cleaved peptides of apomyoglobin. Biopolymers 1982; 21:805-15. [PMID: 7082766 DOI: 10.1002/bip.360210407] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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16
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Wagnière G, Iseli M, Geiger R, Gans W. MO-calculation of the optical activity of oligopeptides. I. Computational procedure and application to small helices. Helv Chim Acta 1977; 60:1831-44. [PMID: 914628 DOI: 10.1002/hlca.19770600602] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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17
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Greenfield NJ. Enzyme ligand complexes: spectroscopic studies. CRC CRITICAL REVIEWS IN BIOCHEMISTRY 1975; 3:71-110. [PMID: 238788 DOI: 10.3109/10409237509102553] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Herskovits TT, Solli NJ. Studies of the conformation of apomyoglobin in aqueous solutions and denaturing organic solvents. Biopolymers 1975; 14:319-34. [PMID: 1174664 DOI: 10.1002/bip.1975.360140207] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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19
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Adler AJ, Greenfield NJ, Fasman GD. Circular dichroism and optical rotatory dispersion of proteins and polypeptides. Methods Enzymol 1973; 27:675-735. [PMID: 4797940 DOI: 10.1016/s0076-6879(73)27030-1] [Citation(s) in RCA: 397] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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20
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Vodrázka Z, Hrkal Z, Kodícek MB, Jandová D. Comparison of the conformation of mammalian globins in solution. EUROPEAN JOURNAL OF BIOCHEMISTRY 1972; 31:296-9. [PMID: 4675036 DOI: 10.1111/j.1432-1033.1972.tb02532.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Schneider R, Mayer A, Schmatz W, Schelten J, Franzel R, Eicher H. X-ray and neutron small-angle scattering from hemoglobin in aqueous solution and in crystal. EUROPEAN JOURNAL OF BIOCHEMISTRY 1971; 20:179-82. [PMID: 5560403 DOI: 10.1111/j.1432-1033.1971.tb01376.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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23
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Grant EH, South GP, Takashima S, Ichimura H. Dielectric dispersion in aqueous solutions of oxyhaemoglobin and carboxyhaemoglobin. Biochem J 1971; 122:691-9. [PMID: 5129265 PMCID: PMC1176838 DOI: 10.1042/bj1220691] [Citation(s) in RCA: 35] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The relative permittivity and conductivity of aqueous solutions of oxyhaemoglobin and carboxyhaemoglobin were measured over the frequency range 150kHz-100MHz. To minimize errors of measurement the investigations were carried out with three different samples of each type of haemoglobin, independent apparatus being used in two different laboratories. The dielectric increment and relaxation time were calculated at each of several temperatures from the results. These lead to a dipole moment of 400 Debyes and an activation enthalpy of 17.6+/-1.4kJ.mol(-1), both of which were found to be independent of temperature to within experimental error over the range 3-35 degrees C. The value of the dipole moment shows that the distribution of charge throughout the haemoglobin molecule is nearly symmetrical with respect to the centre of charge. The magnitude of the activation enthalpy is similar to that of the viscosity of water, in accord with the common observation that dielectric relaxation and viscosity are related phenomena. No significant differences are found between the dielectric parameters of oxyhaemoglobin and carboxyhaemoglobin. Combining the results with those obtained from X-ray diffraction of the solid a hydration value of 0.45g of water/g of protein is suggested, subject to the limitations of the model used. Finally, the results indicate the presence of a subsidiary dispersion, which could be attributed to the above quantity of bound water having a static permittivity of about 100 and a relaxation frequency in the region 100-200MHz.
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Kim YD, Ke B. Conformational stability of the bacteriochlorophyll-protein complex isolated from the green photosynthetic bacterium Chloropseudomonas ethylicum. I. The conformational states at acid, neutral, and alkaline pH values. Arch Biochem Biophys 1970; 140:341-53. [PMID: 5472679 DOI: 10.1016/0003-9861(70)90075-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Yong FC, King TE, Oldham S, Mason HS. Redox-dependent conformational changes of rabbit liver cytochrome P-450. Arch Biochem Biophys 1970; 138:96-100. [PMID: 5446352 DOI: 10.1016/0003-9861(70)90288-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Perrin JH, Hart PA. Small molecule-macromolecular interactions as studied by optical rotatory dispersion--circular dichroism. J Pharm Sci 1970; 59:431-48. [PMID: 4315400 DOI: 10.1002/jps.2600590402] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Oriol-Audit C, Landon MF, Robin Y, van Thoai N. Étude de la conformation de diverses phosphagène phosphotransférases par dispersion optique rotatoire. ACTA ACUST UNITED AC 1969. [DOI: 10.1016/0005-2795(69)90052-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Abstract
As judged from the midpoints of the denaturation transition of 31 water-miscible alcohols, ureas, and amides, the effectiveness of these denaturing agents on sperm-whale myoglobin increases with increasing chain length and hydrocarbon content, as expected in view of the disorganization of the hydrophobic interior of this protein. Increase in the hydroxyl content, blocking of the functional amino groups of the ureas and amides by alkyl substitution, and branching of the hydrocarbon portion of the denaturants are of less importance in determining the effectiveness of the denaturants.
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Epand RM, Scheraga HA. The influence of long-range interactions on the structure of myoglobin. Biochemistry 1968; 7:2864-72. [PMID: 5691142 DOI: 10.1021/bi00848a024] [Citation(s) in RCA: 139] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Formanek H, Engel J. Optical rotatory dispersion of a respiratory hemeprotein of Chironomus thummi. BIOCHIMICA ET BIOPHYSICA ACTA 1968; 160:151-8. [PMID: 5658119 DOI: 10.1016/0005-2795(68)90081-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Sugita Y, Dohi Y, Yoneyama Y. Circular dichroism of lamprey and human hemoglobins. Biochem Biophys Res Commun 1968; 31:447-52. [PMID: 5653656 DOI: 10.1016/0006-291x(68)90497-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Abstract
Circular dichroism, the unequal absorption of right and left circularly polarized light, is a manifestation of optical activity in the vicinity of absorption bands. To the experimental scientist interested in the conformation of macromolecules and in the sensitive response of optical activity to conformational alteration, it offers a relatively new and powerful means of understanding the environment of chromophoric residues. As a tool in the elucidation of electronic spectra, it should be useful to the theoretical scientist in identifying weakly allowed absorption bands as well as in providing rotational parameters which can be compared with the developing theory of optical activity. I have stressed application of circular dichroism, to experimental aspects of protein and nucleic acid conformation in solution. Much is still uncertain in particular quantitative details. However, even these early results shed new light and yield new information on the conformation of these molecules.
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Tomimatsu Y, Vitello L, Gaffield W. Effect of aggregation on the optical rotatory dispersion of poly(?,L-glutamic acid). Biopolymers 1966. [DOI: 10.1002/bip.1966.360040605] [Citation(s) in RCA: 57] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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45
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Smillie LB, Enenkel AG, Kay CM. Physicochemical Properties and Amino Acid Composition of Chymotrypsinogen B. J Biol Chem 1966. [DOI: 10.1016/s0021-9258(18)96671-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Hardman KD, Eylar EH, Ray DK, Banaszak LJ, Gurd FR. Isolation of Sperm Whale Myoglobin by Low Temperature Fractionation with Ethanol and Metallic Ions. J Biol Chem 1966. [DOI: 10.1016/s0021-9258(18)96936-x] [Citation(s) in RCA: 80] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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49
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Havsteen BH. A study of the correlation between the amino acid composition and the helical content of proteins. J Theor Biol 1966; 10:1-10. [PMID: 5965094 DOI: 10.1016/0022-5193(66)90174-3] [Citation(s) in RCA: 39] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Bayley PM, Radda GK. Conformational changes and the regulation of glutamate-dehydrogenase activity. Biochem J 1966; 98:105-11. [PMID: 4287181 PMCID: PMC1264801 DOI: 10.1042/bj0980105] [Citation(s) in RCA: 68] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
1. The effect of NADH and the non-competitive inhibitor GTP on the optical-rotatory-dispersion properties of glutamate dehydrogenase has been studied. 2. Analysis of the data in terms of the a(0) and b(0) parameters of the Moffitt-Yang equation indicates that a conformational change is induced either by NADH or by GTP in the presence of small amounts of NADH. 3. Sedimentation measurements under comparable conditions showed that the enzyme reversibly dissociates into sub-units but that this dissociation is only secondary to the conformational changes. 4. Fluorescence measurements showed that the binding constant of NADH and the number of binding sites on the enzyme increased in the presence of GTP. 5. This is confirmed by studies of fluorescence polarization, which in addition showed that the movement of NADH on the enzyme surface is more restricted in the presence of GTP. 6. The relation of these results to possible regulatory mechanisms is discussed.
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