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For: Di Giulio M. The ancestor of the Bacteria domain was a hyperthermophile. J Theor Biol 2003;224:277-83. [PMID: 12941586 DOI: 10.1016/s0022-5193(03)00164-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Number Cited by Other Article(s)
1
Felipe Benites L, Stephens TG, Van Etten J, James T, Christian WC, Barry K, Grigoriev IV, McDermott TR, Bhattacharya D. Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Commun Biol 2024;7:312. [PMID: 38594478 PMCID: PMC11003980 DOI: 10.1038/s42003-024-05931-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 02/16/2024] [Indexed: 04/11/2024]  Open
2
Leng H, Wang Y, Zhao W, Sievert SM, Xiao X. Identification of a deep-branching thermophilic clade sheds light on early bacterial evolution. Nat Commun 2023;14:4354. [PMID: 37468486 DOI: 10.1038/s41467-023-39960-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 07/06/2023] [Indexed: 07/21/2023]  Open
3
Di Giulio M. On Earth, there would be a number of fundamental kinds of primary cells – cellular domains – greater than or equal to four. J Theor Biol 2018;443:10-17. [DOI: 10.1016/j.jtbi.2018.01.025] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2017] [Revised: 01/10/2018] [Accepted: 01/19/2018] [Indexed: 11/15/2022]
4
Giovannelli D, Sievert SM, Hügler M, Markert S, Becher D, Schweder T, Vetriani C. Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans. eLife 2017;6. [PMID: 28436819 PMCID: PMC5441870 DOI: 10.7554/elife.18990] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Accepted: 04/23/2017] [Indexed: 01/10/2023]  Open
5
Seligmann H. Translation of mitochondrial swinger RNAs according to tri-, tetra- and pentacodons. Biosystems 2015;140:38-48. [PMID: 26723232 DOI: 10.1016/j.biosystems.2015.11.009] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Revised: 11/08/2015] [Accepted: 11/23/2015] [Indexed: 10/22/2022]
6
Budd A, Devos DP. Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum. Front Microbiol 2012;3:401. [PMID: 23189077 PMCID: PMC3505017 DOI: 10.3389/fmicb.2012.00401] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 10/31/2012] [Indexed: 12/26/2022]  Open
7
van Niftrik L, Jetten MSM. Anaerobic ammonium-oxidizing bacteria: unique microorganisms with exceptional properties. Microbiol Mol Biol Rev 2012;76:585-96. [PMID: 22933561 PMCID: PMC3429623 DOI: 10.1128/mmbr.05025-11] [Citation(s) in RCA: 139] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
8
Chistoserdova L. Modularity of methylotrophy, revisited. Environ Microbiol 2011;13:2603-22. [DOI: 10.1111/j.1462-2920.2011.02464.x] [Citation(s) in RCA: 277] [Impact Index Per Article: 19.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
9
Caldwell SL, Liu Y, Ferrera I, Beveridge T, Reysenbach AL. Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring. Int J Syst Evol Microbiol 2009;60:338-343. [PMID: 19651724 DOI: 10.1099/ijs.0.010496-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
10
House CH. The tree of life viewed through the contents of genomes. Methods Mol Biol 2009;532:141-161. [PMID: 19271183 DOI: 10.1007/978-1-60327-853-9_8] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
11
Flores GE, Liu Y, Ferrera I, Beveridge TJ, Reysenbach AL. Sulfurihydrogenibium kristjanssonii sp. nov., a hydrogen- and sulfur-oxidizing thermophile isolated from a terrestrial Icelandic hot spring. Int J Syst Evol Microbiol 2008;58:1153-8. [DOI: 10.1099/ijs.0.65570-0] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
12
Extreme Views on Prokaryote Evolution. SOIL BIOLOGY 2008. [DOI: 10.1007/978-3-540-74231-9_3] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
13
Branciamore S, Barion S, Gallori E, Di Giulio M. The first lines of divergence in the Bacteria domain seem to be the hyperthermophilic organisms: a check using an outgroup of sequences from mesophiles in phylogenetic analysis. ANN MICROBIOL 2007. [DOI: 10.1007/bf03175367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]  Open
14
Becerra A, Delaye L, Lazcano A, Orgel LE. Protein disulfide oxidoreductases and the evolution of thermophily: was the last common ancestor a heat-loving microbe? J Mol Evol 2007;65:296-303. [PMID: 17726569 DOI: 10.1007/s00239-007-9005-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2007] [Accepted: 06/04/2007] [Indexed: 12/13/2022]
15
Xu Y, Labedan B, Glansdorff N. Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms. Microbiol Mol Biol Rev 2007;71:36-47. [PMID: 17347518 PMCID: PMC1847373 DOI: 10.1128/mmbr.00032-06] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Fuchsman CA, Rocap G. Whole-genome reciprocal BLAST analysis reveals that planctomycetes do not share an unusually large number of genes with Eukarya and Archaea. Appl Environ Microbiol 2006;72:6841-4. [PMID: 17021241 PMCID: PMC1610313 DOI: 10.1128/aem.00429-06] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Syst Biol 2006;55:441-53. [PMID: 16861208 DOI: 10.1080/10635150600697416] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]  Open
18
Membrane-bounded Nucleoids and Pirellulosomes of Planctomycetes. ACTA ACUST UNITED AC 2006. [DOI: 10.1007/7171_026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
19
Barion S, Franchi M, Gallori E, Di Giulio M. The first lines of divergence in the Bacteria domain were the hyperthermophilic organisms, the Thermotogales and the Aquificales, and not the mesophilic Planctomycetales. Biosystems 2006;87:13-9. [PMID: 16757099 DOI: 10.1016/j.biosystems.2006.02.011] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2005] [Revised: 02/27/2006] [Accepted: 02/28/2006] [Indexed: 11/20/2022]
20
Teeling H, Gloeckner FO. RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits. BMC Bioinformatics 2006;7:66. [PMID: 16476165 PMCID: PMC1421441 DOI: 10.1186/1471-2105-7-66] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2005] [Accepted: 02/13/2006] [Indexed: 11/28/2022]  Open
21
Fuerst JA. INTRACELLULAR COMPARTMENTATION IN PLANCTOMYCETES. Annu Rev Microbiol 2005;59:299-328. [PMID: 15910279 DOI: 10.1146/annurev.micro.59.030804.121258] [Citation(s) in RCA: 190] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
22
Jetten MSM, Cirpus I, Kartal B, van Niftrik L, van de Pas-Schoonen KT, Sliekers O, Haaijer S, van der Star W, Schmid M, van de Vossenberg J, Schmidt I, Harhangi H, van Loosdrecht M, Gijs Kuenen J, Op den Camp H, Strous M. 1994-2004: 10 years of research on the anaerobic oxidation of ammonium. Biochem Soc Trans 2005;33:119-23. [PMID: 15667281 DOI: 10.1042/bst0330119] [Citation(s) in RCA: 103] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
23
Bauer M, Lombardot T, Teeling H, Ward NL, Amann RI, Glöckner FO. Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum. J Mol Evol 2005;59:571-86. [PMID: 15693614 DOI: 10.1007/s00239-004-2643-6] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
24
Strous M, Jetten MSM. Anaerobic Oxidation of Methane and Ammonium. Annu Rev Microbiol 2004;58:99-117. [PMID: 15487931 DOI: 10.1146/annurev.micro.58.030603.123605] [Citation(s) in RCA: 142] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
25
Teeling H, Lombardot T, Bauer M, Ludwig W, Glöckner FO. Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int J Syst Evol Microbiol 2004;54:791-801. [PMID: 15143026 DOI: 10.1099/ijs.0.02913-0] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Butler MK, Fuerst JA. Comparative analysis of ribonuclease P RNA of the planctomycetes. Int J Syst Evol Microbiol 2004;54:1333-1344. [PMID: 15280311 DOI: 10.1099/ijs.0.03013-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
27
Cowen DA. The upper temperature of life--where do we draw the line? Trends Microbiol 2004;12:58-60. [PMID: 15040324 DOI: 10.1016/j.tim.2003.12.002] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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