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Cohen MJ, Philippe B, Lipke PN. Endocytic tethers modulate unconventional GAPDH secretion. Cell Surf 2025; 13:100138. [PMID: 39830088 PMCID: PMC11742311 DOI: 10.1016/j.tcsw.2024.100138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Revised: 12/16/2024] [Accepted: 12/20/2024] [Indexed: 01/22/2025] Open
Abstract
Yeast cell walls contain both classically-secreted and unconventionally-secreted proteins. The latter class lacks the signal sequence for translocation into the ER, therefore these proteins are transported to the wall by uncharacterized mechanisms. One such protein is the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH) which is abundant in the cytosol, but also found in the yeast cell wall where it is enzymatically active. We screened diploid Saccharomyces cerevisiae homozygous gene deletions for changes in cell wall GAPDH activity. Deletions targeting endocytic tethers in the endolysosomal system had the largest effects on GAPDH secretion, including vps21, bro1, vps41, and pep12. The predominant GAPDH isoform Tdh3 was partially localized to endolysosomal compartments, including multivesicular bodies, which are common entry points to unconventional protein secretion pathways. Yeast lacking the endosomal Rab5-GTPase Vps21 had defects in GAPDH secretion as well as delayed entry into to the endolysosomal compartments. Therefore, we conclude that entry into the endolysosomal compartment facilitates non-conventional secretion of GAPDH.
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Affiliation(s)
- Michael J. Cohen
- Biology Department, Brooklyn College of the City University of New York, Brooklyn, NY 11210, USA
- The Graduate Center of the City University of New York, New York, NY 10016, USA
| | - Brianne Philippe
- Biology Department, Brooklyn College of the City University of New York, Brooklyn, NY 11210, USA
| | - Peter N. Lipke
- Biology Department, Brooklyn College of the City University of New York, Brooklyn, NY 11210, USA
- The Graduate Center of the City University of New York, New York, NY 10016, USA
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Hou L, Wang J, Li T, Zhang B, Yan K, Zhang Z, Geng X, Chang M, Meng J. Transcriptome Analysis Revealed That Cell Wall Regulatory Pathways Are Involved in the Tolerance of Pleurotus ostreatus Mycelia to Different Heat Stresses. J Fungi (Basel) 2025; 11:266. [PMID: 40278087 PMCID: PMC12028245 DOI: 10.3390/jof11040266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Revised: 03/23/2025] [Accepted: 03/28/2025] [Indexed: 04/26/2025] Open
Abstract
Pleurotus ostreatus is the third largest cultivated species in China's edible mushroom industry; however, its agricultural cultivation method is easily affected by high-temperature environments. To understand the response mechanism of mycelia to heat stress, the mycelia of P. ostreatus, which had been grown at 28 °C for 4 days, were subjected to heat stress at 32 °C and 36 °C for 2 days, followed by RNA-seq analysis. These results indicate that, under heat stress, mycelial growth was significantly inhibited, the cell membrane was disrupted, the cell walls became thicker, and chitinase and β-1,3-glucanase activities decreased. Transcriptome analysis revealed 2118 differentially expressed genes (DEGs) under 36 °C heat stress, and 458 DEGs were identified under 32 °C heat stress. A total of 328 DEGs were upregulated or downregulated under heat stress at 36 °C and 32 °C. The functional enrichment analysis of these genes revealed significant enrichment in genes related to hydrogen peroxide metabolism, oxidoreductase activity, ATP hydrolysis, and cell wall structure composition. There was a total of 80 DEGs specific to heat stress at 32 °C, and they were significantly enriched in catalase activity, the cell wall, the aminoglycan catabolic process, and oxidoreductase activity. However, 817 DEGs specific to heat stress at 36 °C were significantly enriched in the cell wall, integral components of the membrane, and oxidoreductase activity. The identification of cell wall-related genes revealed that hydrophobic proteins, Cerato plateau proteins, laccases, and glycoside hydrolases may respond to stress. The results of qRT-PCR for cell wall-related genes are consistent with the RNA-seq data. This study revealed several potential candidate genes for high-temperature thermal response, laying the foundation for the study of the thermal response mechanism of P. ostreatus.
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Affiliation(s)
- Ludan Hou
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
- Shanxi Key Laboratory of Edible Fungi for Loess Plateau, Taigu, Jinzhong 030801, China
| | - Jingyi Wang
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
| | - Tonglou Li
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
| | - Baosheng Zhang
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
| | - Kexing Yan
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
| | - Zehua Zhang
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
- Shanxi Key Laboratory of Edible Fungi for Loess Plateau, Taigu, Jinzhong 030801, China
| | - Xueran Geng
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
- Shanxi Key Laboratory of Edible Fungi for Loess Plateau, Taigu, Jinzhong 030801, China
| | - Mingchang Chang
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
- Shanxi Research Center for Engineering Technology of Edible Fungi, Taigu, Jinzhong 030801, China
| | - Junlong Meng
- College of Food Science and Engineering, Shanxi Agricultural University, Taigu, Jinzhong 030801, China; (J.W.); (T.L.); (B.Z.); (K.Y.); (Z.Z.); (X.G.); (M.C.)
- Shanxi Research Center for Engineering Technology of Edible Fungi, Taigu, Jinzhong 030801, China
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Karitani Y, Yamada R, Matsumoto T, Ogino H. Improvement of cell growth in green algae Chlamydomonas reinhardtii through co-cultivation with yeast Saccharomyces cerevisiae. Biotechnol Lett 2024; 46:431-441. [PMID: 38578514 DOI: 10.1007/s10529-024-03483-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 02/20/2024] [Accepted: 03/12/2024] [Indexed: 04/06/2024]
Abstract
PURPOSE CO2 fixation methods using green algae have attracted considerable attention because they can be applied for the fixation of dilute CO2 in the atmosphere. However, green algae generally exhibit low CO2 fixation efficiency under atmospheric conditions. Therefore, it is a challenge to improve the CO2 fixation efficiency of green algae under atmospheric conditions. Co-cultivation of certain microalgae with heterotrophic microorganisms can increase the growth potential of microalgae under atmospheric conditions. The objective of this study was to determine the culture conditions under which the growth potential of green algae Chlamydomonas reinhardtii is enhanced by co-culturing with the yeast Saccharomyces cerevisiae, and to identify the cause of the enhanced growth potential. RESULTS When C. reinhardtii and S. cerevisiae were co-cultured with an initial green algae to yeast inoculum ratio of 1:3, the cell concentration of C. reinhardtii reached 133 × 105 cells/mL on day 18 of culture, which was 1.5 times higher than that of the monoculture. Transcriptome analysis revealed that the expression levels of 363 green algae and 815 yeast genes were altered through co-cultivation. These included genes responsible for ammonium transport and CO2 enrichment mechanism in green algae and the genes responsible for glycolysis and stress responses in yeast. CONCLUSION We successfully increased C. reinhardtii growth potential by co-culturing it with S. cerevisiae. The main reasons for this are likely to be an increase in inorganic nitrogen available to green algae via yeast metabolism and an increase in energy available for green algae growth instead of CO2 enrichment.
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Affiliation(s)
- Yukino Karitani
- Department of Chemical Engineering, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531, Japan
| | - Ryosuke Yamada
- Department of Chemical Engineering, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531, Japan.
| | - Takuya Matsumoto
- Department of Chemical Engineering, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531, Japan
| | - Hiroyasu Ogino
- Department of Chemical Engineering, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531, Japan
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Mark M, Klein O, Zhang Y, Das K, Elbaz A, Hazan RN, Lichtenstein M, Lehming N, Schuldiner M, Pines O. Systematic Approaches to Study Eclipsed Targeting of Proteins Uncover a New Family of Mitochondrial Proteins. Cells 2023; 12:1550. [PMID: 37296670 PMCID: PMC10252432 DOI: 10.3390/cells12111550] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 05/25/2023] [Accepted: 05/31/2023] [Indexed: 06/12/2023] Open
Abstract
Dual localization or dual targeting refers to the phenomenon by which identical, or almost identical, proteins are localized to two (or more) separate compartments of the cell. From previous work in the field, we had estimated that a third of the mitochondrial proteome is dual-targeted to extra-mitochondrial locations and suggested that this abundant dual targeting presents an evolutionary advantage. Here, we set out to study how many additional proteins whose main activity is outside mitochondria are also localized, albeit at low levels, to mitochondria (eclipsed). To do this, we employed two complementary approaches utilizing the α-complementation assay in yeast to uncover the extent of such an eclipsed distribution: one systematic and unbiased and the other based on mitochondrial targeting signal (MTS) predictions. Using these approaches, we suggest 280 new eclipsed distributed protein candidates. Interestingly, these proteins are enriched for distinctive properties compared to their exclusively mitochondrial-targeted counterparts. We focus on one unexpected eclipsed protein family of the Triose-phosphate DeHydrogenases (TDH) and prove that, indeed, their eclipsed distribution in mitochondria is important for mitochondrial activity. Our work provides a paradigm of deliberate eclipsed mitochondrial localization, targeting and function, and should expand our understanding of mitochondrial function in health and disease.
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Affiliation(s)
- Maayan Mark
- Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel; (M.M.); (K.D.); (A.E.); (R.N.H.)
| | - Ofir Klein
- Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel; (O.K.); (M.S.)
| | - Yu Zhang
- CREATE-NUS-HUJ Program and Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 138602, Singapore; (Y.Z.); (N.L.)
| | - Koyeli Das
- Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel; (M.M.); (K.D.); (A.E.); (R.N.H.)
| | - Adi Elbaz
- Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel; (M.M.); (K.D.); (A.E.); (R.N.H.)
| | - Reut Noa Hazan
- Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel; (M.M.); (K.D.); (A.E.); (R.N.H.)
| | - Michal Lichtenstein
- Department of Biochemistry and Molecular Biology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel;
| | - Norbert Lehming
- CREATE-NUS-HUJ Program and Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 138602, Singapore; (Y.Z.); (N.L.)
| | - Maya Schuldiner
- Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel; (O.K.); (M.S.)
| | - Ophry Pines
- Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem 9112102, Israel; (M.M.); (K.D.); (A.E.); (R.N.H.)
- CREATE-NUS-HUJ Program and Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 138602, Singapore; (Y.Z.); (N.L.)
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Sánchez-Alonzo K, Silva-Mieres F, Arellano-Arriagada L, Parra-Sepúlveda C, Bernasconi H, Smith CT, Campos VL, García-Cancino A. Nutrient Deficiency Promotes the Entry of Helicobacter pylori Cells into Candida Yeast Cells. BIOLOGY 2021; 10:426. [PMID: 34065788 PMCID: PMC8151769 DOI: 10.3390/biology10050426] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 05/02/2021] [Accepted: 05/04/2021] [Indexed: 12/14/2022]
Abstract
Helicobacter pylori, a Gram-negative bacterium, has as a natural niche the human gastric epithelium. This pathogen has been reported to enter into Candida yeast cells; however, factors triggering this endosymbiotic relationship remain unknown. The aim of this work was to evaluate in vitro if variations in nutrient concentration in the cultured medium trigger the internalization of H. pylori within Candida cells. We used H. pylori-Candida co-cultures in Brucella broth supplemented with 1%, 5% or 20% fetal bovine serum or in saline solution. Intra-yeast bacteria-like bodies (BLBs) were observed using optical microscopy, while intra-yeast BLBs were identified as H. pylori using FISH and PCR techniques. Intra-yeast H. pylori (BLBs) viability was confirmed using the LIVE/DEAD BacLight Bacterial Viability kit. Intra-yeast H. pylori was present in all combinations of bacteria-yeast strains co-cultured. However, the percentages of yeast cells harboring bacteria (Y-BLBs) varied according to nutrient concentrations and also were strain-dependent. In conclusion, reduced nutrients stresses H. pylori, promoting its entry into Candida cells. The starvation of both H. pylori and Candida strains reduced the percentages of Y-BLBs, suggesting that starving yeast cells may be less capable of harboring stressed H. pylori cells. Moreover, the endosymbiotic relationship between H. pylori and Candida is dependent on the strains co-cultured.
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Affiliation(s)
- Kimberly Sánchez-Alonzo
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
| | - Fabiola Silva-Mieres
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
| | - Luciano Arellano-Arriagada
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
| | - Cristian Parra-Sepúlveda
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
| | | | - Carlos T. Smith
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
| | - Víctor L. Campos
- Laboratory of Environmental Microbiology, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepción, Concepción 4070386, Chile;
| | - Apolinaria García-Cancino
- Laboratory of Bacterial Pathogenicity, Department of Microbiology, Faculty of Biological Sciences, Universidad de Concepcion, Concepción 4070386, Chile; (K.S.-A.); (F.S.-M.); (L.A.-A.); (C.P.-S.); (C.T.S.)
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Abstract
In yeast, many proteins are found in both the cytoplasmic and extracellular compartments, and consequently it can be difficult to distinguish nonconventional secretion from cellular leakage. Therefore, we monitored the extracellular glyceraldehyde-3-phosphate dehydrogenase (GAPDH) activity of intact cells as a specific marker for nonconventional secretion. Extracellular GAPDH activity was proportional to the number of cells assayed, increased with incubation time, and was dependent on added substrates. Preincubation of intact cells with 100 μM dithiothreitol increased the reaction rate, consistent with increased access of the enzyme after reduction of cell wall disulfide cross-links. Such treatment did not increase cell permeability to propidium iodide, in contrast to effects of higher concentrations of reducing agents. An amine-specific membrane-impermeant biotinylation reagent specifically inactivated extracellular GAPDH. The enzyme was secreted again after a 30- to 60-min lag following the inactivation, and there was no concomitant increase in propidium iodide staining. There were about 4 × 104 active GAPDH molecules per cell at steady state, and secretion studies showed replenishment to that level 1 h after inactivation. These results establish conditions for specific quantitative assays of cell wall proteins in the absence of cytoplasmic leakage and for subsequent quantification of secretion rates in intact cells.IMPORTANCE Eukaryotic cells secrete many proteins, including many proteins that do not follow the classical secretion pathway. Among these, the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is unexpectedly found in the walls of yeasts and other fungi and in extracellular space in mammalian cell cultures. It is difficult to quantify extracellular GAPDH, because leakage of just a little of the very large amount of cytoplasmic enzyme can invalidate the determinations. We used enzymatic assays of intact cells while also maintaining membrane integrity. The results lead to estimates of the amount of extracellular enzyme and its rate of secretion to the wall in intact cells. Therefore, enzyme assays under controlled conditions can be used to investigate nonconventional secretion more generally.
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Martin-Yken H, Bedekovic T, Brand AC, Richard ML, Znaidi S, d'Enfert C, Dague E. A conserved fungal hub protein involved in adhesion and drug resistance in the human pathogen Candida albicans. Cell Surf 2018; 4:10-19. [PMID: 32743132 PMCID: PMC7389261 DOI: 10.1016/j.tcsw.2018.10.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 10/19/2018] [Accepted: 10/22/2018] [Indexed: 11/30/2022] Open
Abstract
Drug resistance and cellular adhesion are two key elements of both dissemination and prevalence of the human fungal pathogen Candida albicans. Smi1 belongs to a family of hub proteins conserved among the fungal kingdom whose functions in cellular signaling affect morphogenesis, cell wall synthesis and stress resistance. The data presented here indicate that C. albicans SMI1 is a functional homolog of Saccharomyces cerevisiae KNR4 and is involved in the regulation of cell wall synthesis. Expression of SMI1 in S. cerevisiae knr4Δ null mutants rescued their sensitivity to caspofungin and to heat stress. Deletion of SMI1 in C. albicans resulted in sensitivity to the cell-wall-perturbing compounds Calcofluor White and Caspofungin. Analysis of wild-type and mutant cells by Atomic Force Microscopy showed that the Young's Modulus (stiffness) of the cell wall was reduced by 85% upon deletion of SMI1, while cell surface adhesion measured by Force Spectroscopy showed that the surface expression of adhesive molecules was also reduced in the mutant. Over-expression of SMI1, on the contrary, increased cell surface adhesion by 6-fold vs the control strain. Finally, Smi1-GFP localized as cytoplasmic patches and concentrated spots at the sites of new cell wall synthesis including the tips of growing hyphae, consistent with a role in cell wall regulation. Thus, Smi1 function appears to be conserved across fungi, including the yeast S. cerevisiae, the yeast and hyphal forms of C. albicans and the filamentous fungus Neurospora crassa.
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Affiliation(s)
- Hélène Martin-Yken
- LISBP, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France
- LAAS CNRS UPR 8001, Université de Toulouse, Toulouse, France
| | - Tina Bedekovic
- MRC Centre for Medical Mycology, School of Medicine, Medical Sciences & Nutrition, University of Aberdeen, Aberdeen, United Kingdom
| | - Alexandra C. Brand
- MRC Centre for Medical Mycology, School of Medicine, Medical Sciences & Nutrition, University of Aberdeen, Aberdeen, United Kingdom
| | | | - Sadri Znaidi
- Institut Pasteur de Tunis, Laboratoire de Microbiologie Moléculaire, Vaccinologie et Développement Biotechnologique, 13 Place Pasteur, Tunis-Belvédère, Tunisia
- Institut Pasteur, INRA USC2019, Unité Biologie et Pathogénicité Fongiques, 25 rue du Docteur Roux, Paris, France
| | - Christophe d'Enfert
- Institut Pasteur, INRA USC2019, Unité Biologie et Pathogénicité Fongiques, 25 rue du Docteur Roux, Paris, France
| | - Etienne Dague
- LAAS CNRS UPR 8001, Université de Toulouse, Toulouse, France
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Branco P, Kemsawasd V, Santos L, Diniz M, Caldeira J, Almeida MG, Arneborg N, Albergaria H. Saccharomyces cerevisiae accumulates GAPDH-derived peptides on its cell surface that induce death of non-Saccharomyces yeasts by cell-to-cell contact. FEMS Microbiol Ecol 2017; 93:3753550. [DOI: 10.1093/femsec/fix055] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 04/21/2017] [Indexed: 11/13/2022] Open
Affiliation(s)
- Patrícia Branco
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia (LNEG), Estrada do Paço do Lumiar 22, 1649-038 Lisboa, Portugal
- LEAF, Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda 1349-017 Lisboa, Portugal
| | - Varongsiri Kemsawasd
- Department of Food Science, Faculty of Science, University of Copenhagen, Rolighedsvej 26, 1958 Frederiksberg C, Denmark
| | - Lara Santos
- Instituto Superior de Saúde Egas Moniz, Campus Universitário, Quinta da Granja, 2829-511 Monte Caparica, Portugal
| | - Mário Diniz
- Instituto Superior de Saúde Egas Moniz, Campus Universitário, Quinta da Granja, 2829-511 Monte Caparica, Portugal
| | - Jorge Caldeira
- Instituto Superior de Saúde Egas Moniz, Campus Universitário, Quinta da Granja, 2829-511 Monte Caparica, Portugal
- REQUIMTE- Dept. Química, Faculdade de Ciências e Tecnologia (UNL), 2829-516 Monte Caparica, Portugal
| | - Maria Gabriela Almeida
- Instituto Superior de Saúde Egas Moniz, Campus Universitário, Quinta da Granja, 2829-511 Monte Caparica, Portugal
- REQUIMTE- Dept. Química, Faculdade de Ciências e Tecnologia (UNL), 2829-516 Monte Caparica, Portugal
| | - Nils Arneborg
- Department of Food Science, Faculty of Science, University of Copenhagen, Rolighedsvej 26, 1958 Frederiksberg C, Denmark
| | - Helena Albergaria
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia (LNEG), Estrada do Paço do Lumiar 22, 1649-038 Lisboa, Portugal
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Branco P, Francisco D, Monteiro M, Almeida MG, Caldeira J, Arneborg N, Prista C, Albergaria H. Antimicrobial properties and death-inducing mechanisms of saccharomycin, a biocide secreted by Saccharomyces cerevisiae. Appl Microbiol Biotechnol 2016; 101:159-171. [PMID: 27502415 DOI: 10.1007/s00253-016-7755-6] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 07/07/2016] [Accepted: 07/19/2016] [Indexed: 11/26/2022]
Abstract
We recently found that Saccharomyces cerevisiae (strain CCMI 885) secretes antimicrobial peptides (AMPs) derived from the glycolytic enzyme glyceraldehyde 3-phosphate dehydrogenase (GAPDH) that are active against various wine-related yeast and bacteria. Here, we show that several other S. cerevisiae strains also secrete natural biocide fractions during alcoholic fermentation, although at different levels, which correlates with the antagonistic effect exerted against non-Saccharomyces yeasts. We, therefore, term this biocide saccharomycin. The native AMPs were purified by gel-filtration chromatography and its antimicrobial activity was compared to that exhibited by chemically synthesized analogues (AMP1 and AMP2/3). Results show that the antimicrobial activity of the native AMPs is significantly higher than that of the synthetic analogues (AMP1 and AMP2/3), but a conjugated action of the two synthetic peptides is observed. Moreover, while the natural AMPs are active at pH 3.5, the synthetic peptides are not, since they are anionic and cannot dissolve at this acidic pH. These findings suggest that the molecular structure of the native biocide probably involves the formation of aggregates of several peptides that render them soluble under acidic conditions. The death mechanisms induced by the AMPs were also evaluated by means of epifluorescence microscopy-based methods. Sensitive yeast cells treated with the synthetic AMPs show cell membrane disruption, apoptotic molecular markers, and internalization of the AMPs. In conclusion, our work shows that saccharomycin is a natural biocide secreted by S. cerevisiae whose activity depends on the conjugated action of GAPDH-derived peptides. This study also reveals that S. cerevisiae secretes GAPDH-derived peptides as a strategy to combat other microbial species during alcoholic fermentations.
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Affiliation(s)
- Patrícia Branco
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia, Estrada do Paço do Lumiar 22, 1649-038, Lisbon, Portugal
- Research Center Linking Landscape, Environment, Agriculture and Food (LEAF), Tapada da Ajuda, 1349-017, Lisbon, Portugal
| | - Diana Francisco
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia, Estrada do Paço do Lumiar 22, 1649-038, Lisbon, Portugal
| | - Margarida Monteiro
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia, Estrada do Paço do Lumiar 22, 1649-038, Lisbon, Portugal
| | - Maria Gabriela Almeida
- UCIBIO REquimte, Depart. Química, Faculdade de Ciências e Tecnologia (UNL), 2829-516, Monte Caparica, Portugal
- Centro de investigação interdisciplinar Egas Moniz ISCSEM, Quinta da Granja, 2829-511, Monte Caparica, Portugal
| | - Jorge Caldeira
- UCIBIO REquimte, Depart. Química, Faculdade de Ciências e Tecnologia (UNL), 2829-516, Monte Caparica, Portugal
- Centro de investigação interdisciplinar Egas Moniz ISCSEM, Quinta da Granja, 2829-511, Monte Caparica, Portugal
| | - Nils Arneborg
- Department of Food Science, Faculty of Life Sciences, University of Copenhagen, Rolighedsvej 30, 1958, Frederiksberg C, Denmark
| | - Catarina Prista
- Research Center Linking Landscape, Environment, Agriculture and Food (LEAF), Tapada da Ajuda, 1349-017, Lisbon, Portugal
| | - Helena Albergaria
- Unit of Bioenergy, Laboratório Nacional de Energia e Geologia, Estrada do Paço do Lumiar 22, 1649-038, Lisbon, Portugal.
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Narayanan A, Pullepu D, Reddy PK, Uddin W, Kabir MA. Defects in Protein Folding Machinery Affect Cell Wall Integrity and Reduce Ethanol Tolerance in S. cerevisiae. Curr Microbiol 2016; 73:38-45. [DOI: 10.1007/s00284-016-1024-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Accepted: 02/05/2016] [Indexed: 11/28/2022]
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11
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Kim TS, Yoo JH, Kim SY, Pan CH, Kalia VC, Kang YC, Lee JK. Screening and characterization of an Agrobacterium tumefaciens mutant strain producing high level of coenzyme Q10. Process Biochem 2015. [DOI: 10.1016/j.procbio.2014.10.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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12
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Giardina BJ, Stanley BA, Chiang HL. Glucose induces rapid changes in the secretome of Saccharomyces cerevisiae. Proteome Sci 2014; 12:9. [PMID: 24520859 PMCID: PMC3927832 DOI: 10.1186/1477-5956-12-9] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Accepted: 01/31/2014] [Indexed: 12/14/2022] Open
Abstract
Background Protein secretion is a fundamental process in all living cells. Proteins can either be secreted via the classical or non-classical pathways. In Saccharomyces cerevisiae, gluconeogenic enzymes are in the extracellular fraction/periplasm when cells are grown in media containing low glucose. Following a transfer of cells to high glucose media, their levels in the extracellular fraction are reduced rapidly. We hypothesized that changes in the secretome were not restricted to gluconeogenic enzymes. The goal of the current study was to use a proteomic approach to identify extracellular proteins whose levels changed when cells were transferred from low to high glucose media. Results We performed two iTRAQ experiments and identified 347 proteins that were present in the extracellular fraction including metabolic enzymes, proteins involved in oxidative stress, protein folding, and proteins with unknown functions. Most of these proteins did not contain typical ER-Golgi signal sequences. Moreover, levels of many of these proteins decreased upon a transfer of cells from media containing low to high glucose media. Using an extraction procedure and Western blotting, we confirmed that the metabolic enzymes (glyceraldehyde-3-phosphate dehydrogenase, 3-phosphoglycerate kinase, glucose-6-phosphate dehydrogenase, pyruvate decarboxylase), proteins involved in oxidative stress (superoxide dismutase and thioredoxin), and heat shock proteins (Ssa1p, Hsc82p, and Hsp104p) were in the extracellular fraction during growth in low glucose and that the levels of these extracellular proteins were reduced when cells were transferred to media containing high glucose. These proteins were associated with membranes in vesicle-enriched fraction. We also showed that small vesicles were present in the extracellular fraction in cells grown in low glucose. Following a transfer from low to high glucose media for 30 minutes, 98% of these vesicles disappeared from the extracellular fraction. Conclusions Our data indicate that transferring cells from low to high glucose media induces a rapid decline in levels of a large number of extracellular proteins and the disappearance of small vesicles from the extracellular fraction. Therefore, we conclude that the secretome undergoes dynamic changes during transition from glucose-deficient to glucose-rich media. Most of these extracellular proteins do not contain typical ER signal sequences, suggesting that they are secreted via the non-classical pathway.
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Affiliation(s)
| | | | - Hui-Ling Chiang
- Department of Cellular and Molecular Physiology, Penn State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA.
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13
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Giardina BJ, Chiang HL. Fructose-1,6-bisphosphatase, Malate Dehydrogenase, Isocitrate Lyase, Phosphoenolpyruvate Carboxykinase, Glyceraldehyde-3-phosphate Dehydrogenase, and Cyclophilin A are secreted in Saccharomyces cerevisiae grown in low glucose. Commun Integr Biol 2013; 6:e27216. [PMID: 24563717 DOI: 10.4161/cib.27216] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Revised: 11/14/2013] [Accepted: 11/15/2013] [Indexed: 12/31/2022] Open
Abstract
Our previous studies demonstrated that the key gluconeogenic enzyme fructose-1,6-bisphosphatase is secreted when Saccharomyces cerevisiae are starved of glucose for a prolonged period of time. In this study, we showed that malate dehydrogenase, isocitrate lyase, phosphoenolpyruvate carboxykinase, glyceraldehyde-3-phosphate dehydrogenase, and cyclophilin A are also secreted in glucose-starved cells. Thus, both gluconeogenic and non-gluconeogenic enzymes are secreted via the non-classical pathway.
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Affiliation(s)
- Bennett J Giardina
- Department of Cellular and Molecular Physiology; Penn State University College of Medicine; Hershey, PA USA
| | - Hui-Ling Chiang
- Department of Cellular and Molecular Physiology; Penn State University College of Medicine; Hershey, PA USA
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14
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Identification of novel GAPDH-derived antimicrobial peptides secreted by Saccharomyces cerevisiae and involved in wine microbial interactions. Appl Microbiol Biotechnol 2013; 98:843-53. [DOI: 10.1007/s00253-013-5411-y] [Citation(s) in RCA: 116] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2013] [Revised: 11/04/2013] [Accepted: 11/10/2013] [Indexed: 10/26/2022]
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15
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Lau SKP, Tse H, Chan JSY, Zhou AC, Curreem SOT, Lau CCY, Yuen KY, Woo PCY. Proteome profiling of the dimorphic fungus Penicillium marneffei extracellular proteins and identification of glyceraldehyde-3-phosphate dehydrogenase as an important adhesion factor for conidial attachment. FEBS J 2013; 280:6613-26. [PMID: 24128375 DOI: 10.1111/febs.12566] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2013] [Revised: 09/26/2013] [Accepted: 10/04/2013] [Indexed: 12/18/2022]
Abstract
Despite being the most important thermal dimorphic fungus causing systemic mycosis in Southeast Asia, the pathogenic mechanisms of Penicillium marneffei remain largely unknown. By comparing the extracellular proteomes of P. marneffei in mycelial and yeast phases, we identified 12 differentially expressed proteins among which glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and heat shock protein 60 (HSP60) were found to be upregulated in mycelial and yeast phases respectively. Based on previous findings in other pathogens, we hypothesized that these two extracellular proteins may be involved in adherence during P. marneffei-host interaction. Using inhibition assays with recombinant GAPDH (rGAPDH) proteins and anti-rGAPDH sera, we demonstrated that adhesion of P. marneffei conidia to fibronectin and laminin was inhibited by rGAPDH or rabbit anti-rGAPDH serum in a dose-dependent manner. Similarly, a dose-dependent inhibition of conidial adherence to A549 pneumocytes by rGAPDH or rabbit anti-rGAPDH serum was observed, suggesting that P. marneffei GAPDH can mediate binding of conidia to human extracellular matrix proteins and pneumocytes. However, HSP60 did not exhibit similar inhibition on conidia adherence, and neither GAPDH norHSP60 exhibited inhibition on adherence to J774 or THP-1 macrophage cell lines. This report demonstrates GAPDH as an adherence factor in P. marneffei by mediating conidia adherence to host bronchoalveolar epithelium during the early establishment phase of infection.
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Affiliation(s)
- Susanna K P Lau
- State Key Laboratory of Emerging Infectious Diseases, Research Centre of Infection and Immunology and Carol Yu Centre for Infection, University of Hong Kong, China; Department of Microbiology, University of Hong Kong, China
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16
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Giardina BJ, Chiang HL. The key gluconeogenic enzyme fructose-1,6-bisphosphatase is secreted during prolonged glucose starvation and is internalized following glucose re-feeding via the non-classical secretory and internalizing pathways in Saccharomyces cerevisiae. PLANT SIGNALING & BEHAVIOR 2013; 8:24936. [PMID: 23673352 PMCID: PMC3999075 DOI: 10.4161/psb.24936] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 05/03/2013] [Accepted: 05/04/2013] [Indexed: 06/02/2023]
Abstract
In Saccharomyces cerevisia, the key gluconeogenic enzyme fructose-1,6-bisphosphatase is secreted into the periplasm during prolonged glucose starvation and is internalized into Vid/endosomes following glucose re-feeding. Fructose-1,6-bisphosphatase does not contain signal sequences required for the classical secretory and endocytic pathways. Hence, the secretion and internalization are mediated via the non-classical pathways.
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17
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Braconi D, Amato L, Bernardini G, Arena S, Orlandini M, Scaloni A, Santucci A. Surfome analysis of a wild-type wine Saccharomyces cerevisiae strain. Food Microbiol 2011; 28:1220-30. [PMID: 21645823 DOI: 10.1016/j.fm.2011.04.009] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2010] [Revised: 04/18/2011] [Accepted: 04/27/2011] [Indexed: 11/20/2022]
Abstract
The yeast Saccharomyces cerevisiae, besides being an eukaryotic cell model, plays a fundamental role in the production of fermented foods. In the winemaking industry, yeast cell walls may be involved in numerous processes and contribute substantially to the final chemical and sensorial profiles of wines. Nonetheless, apart from mannoproteins, little is known on the protein components of the yeast cell wall and their changes during the fermentation of must into wine. In this work, we performed a dynamic analysis of the cell surface proteome (surfome) of an autochthonous wine yeast strain (previously selected as a wine fermentation starter) by shaving intact cells with trypsin and identifying tryptic peptides by means of nLC-ESI-LIT-MS/MS. Out of the 42 identified proteins, 16 and 14 were found to be specifically expressed in wine yeast surfome at the beginning and at the end of fermentation, respectively. The molecular functions of these specifically expressed proteins might help in explaining their roles in the cell wall as a response to the alcoholic fermentation-related stresses. Additionally, we provided the identification of 20 new potential cell wall related proteins. Globally, our results might provide new useful data for the selection and characterization of yeast strains to be used in the winemaking industry.
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Affiliation(s)
- Daniela Braconi
- Dipartimento di Biotecnologie, Università degli Studi di Siena, via Fiorentina 1, 53100 Siena (SI), Italy
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18
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Dumke R, Hausner M, Jacobs E. Role of Mycoplasma pneumoniae glyceraldehyde-3-phosphate dehydrogenase (GAPDH) in mediating interactions with the human extracellular matrix. Microbiology (Reading) 2011; 157:2328-2338. [DOI: 10.1099/mic.0.048298-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
In different, phylogenetically unrelated micro-organisms, glycolytic enzymes play a dual role. In the cytosol they are involved in metabolic reactions whereas the surface-localized fraction of the enzymes contributes to adhesion and virulence. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a typical member of this group of multifunctional proteins. In this study, we characterized the GAPDH of Mycoplasma pneumoniae, a common pathogen of the human respiratory mucosa. Full-length GAPDH of M. pneumoniae was successfully expressed and used to produce a polyclonal antiserum. By immunofluorescence, colony blot and ELISA experiments with different fractions of the M. pneumoniae proteins, GAPDH was demonstrated to be present in the cytosol and at even higher concentrations at the surface of mycoplasmas. Nevertheless, antibodies against recombinant GAPDH were not detected in sera of immunized animals or of patients with confirmed M. pneumoniae infection. Recombinant GAPDH bound to different human cell lines in a concentration-dependent manner, and binding was inhibited by specific anti-GAPDH serum. In contrast, this antiserum did not significantly influence the adherence of M. pneumoniae to HeLa cells. When different human extracellular matrix proteins were tested in Western blot assays, GAPDH bound to fibrinogen. The results showed that the GAPDH of M. pneumoniae is a member of the family of cytosol-localized glycolytic enzymes, which also occur at the surface of the bacterium, and mediates interactions with the extracellular matrix proteins of the human host. Thus, the surface-exposed fraction of GAPDH may be a factor that contributes to the successful colonization of the human respiratory tract by M. pneumoniae.
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Affiliation(s)
- Roger Dumke
- Dresden University of Technology, Medical Faculty Carl Gustav Carus, Institute of Medical Microbiology and Hygiene, Fetscherstrasse 74, D-01307 Dresden, Germany
| | - Marius Hausner
- Dresden University of Technology, Medical Faculty Carl Gustav Carus, Institute of Medical Microbiology and Hygiene, Fetscherstrasse 74, D-01307 Dresden, Germany
| | - Enno Jacobs
- Dresden University of Technology, Medical Faculty Carl Gustav Carus, Institute of Medical Microbiology and Hygiene, Fetscherstrasse 74, D-01307 Dresden, Germany
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19
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van Eunen K, Bouwman J, Lindenbergh A, Westerhoff HV, Bakker BM. Time-dependent regulation analysis dissects shifts between metabolic and gene-expression regulation during nitrogen starvation in baker's yeast. FEBS J 2009; 276:5521-36. [PMID: 19691496 DOI: 10.1111/j.1742-4658.2009.07235.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Time-dependent regulation analysis is a new methodology that allows us to unravel, both quantitatively and dynamically, how and when functional changes in the cell are brought about by the interplay of gene expression and metabolism. In this first experimental implementation, we dissect the initial and late response of baker's yeast upon a switch from glucose-limited growth to nitrogen starvation. During nitrogen starvation, unspecific bulk degradation of cytosolic proteins and small organelles (autophagy) occurs. If this is the primary cause of loss of glycolytic capacity, one would expect the cells to regulate their glycolytic capacity through decreasing simultaneously and proportionally the capacities of the enzymes in the first hour of nitrogen starvation. This should lead to regulation of the flux which is initially dominated by changes in the enzyme capacity. However, metabolic regulation is also known to act fast. To analyse the interplay between autophagy and metabolism, we examined the first 4 h of nitrogen starvation in detail using time-dependent regulation analysis. Some enzymes were initially regulated more by a breakdown of enzyme capacity and only later through metabolic regulation. However, other enzymes were regulated metabolically in the first hours and then shifted towards regulation via enzyme capacity. We conclude that even initial regulation is subtle and governed by different molecular levels.
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Affiliation(s)
- Karen van Eunen
- Department of Molecular Cell Physiology, Vrije Universiteit Amsterdam, The Netherlands
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20
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Abstract
The Candida albicans cell wall maintains the structural integrity of the organism in addition to providing a physical contact interface with the environment. The major components of the cell wall are fibrillar polysaccharides and proteins. The proteins of the cell wall are the focus of this review. Three classes of proteins are present in the candidal cell wall. One group of proteins attach to the cell wall via a glycophosphatidylinositol remnant or by an alkali-labile linkage. A second group of proteins with N-terminal signal sequences but no covalent attachment sequences are secreted by the classical secretory pathway. These proteins may end up in the cell wall or in the extracellular space. The third group of proteins lack a secretory signal, and the pathway(s) by which they become associated with the surface is unknown. Potential constituents of the first two classes have been predicted from analysis of genome sequences. Experimental analyses have identified members of all three classes. Some members of each class selected for consideration of confirmed or proposed function, phenotypic analysis of a mutant, and regulation by growth conditions and transcription factors are discussed in more detail.
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21
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Lin WY, Ting YC, Pan TM. Proteomic response to intracellular proteins of Monascus pilosus grown under phosphate-limited complex medium with different growth rates and pigment production. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2007; 55:467-74. [PMID: 17227081 DOI: 10.1021/jf0622937] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Monascus pigments are important colorings in food applications. Rice containing potassium phosphate and sodium nitrate was reported as a good pigment-producing medium for Monascus in previous studies. We found that the lack of potassium phosphate in this medium depressed red pigment production in cultivated Monascus pilosus. However, the influence of phosphate limitation on the biochemical metabolisms concerning culture growth and pigment production in Monascus remains unknown. Here, we used proteomic analysis by two-dimensional gel electrophoresis, matrix-assisted laser desorption ionization time-of-flight/time-of-flight mass spectrometry (MALDI-TOF/TOF MS), tandem mass spectrometry (MS/MS), and database interrogation to separate and identify the proteins of M. pilosus grown between the lack of potassium phosphate and the control media. Phosphate limitation to this complex medium induced an up-regulation of aldehyde dehydrogenase and several glycolytic enzymes in Monascus relative to the control. In contrast, the metabolic enzymes such as glucosamine:fructose-6-phosphate aminotransferase and ADP-ribosylation factor 1 were up-regulated in the control.
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Affiliation(s)
- Wun-Yuan Lin
- Institute of Microbiology and Biochemistry, National Taiwan University, Taipei, Taiwan, Republic of China
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22
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Paradis-Bleau C, Beaumont M, Boudreault L, Lloyd A, Sanschagrin F, Bugg TDH, Levesque RC. Selection of peptide inhibitors against the Pseudomonas aeruginosa MurD cell wall enzyme. Peptides 2006; 27:1693-700. [PMID: 16517013 DOI: 10.1016/j.peptides.2006.01.017] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/15/2005] [Revised: 01/20/2006] [Accepted: 01/23/2006] [Indexed: 11/24/2022]
Abstract
The purified Pseudomonas aeruginosa cell wall biosynthesis MurD amide ligase enzyme was used to screen C-7-C and 12 mers peptides from phage display libraries using competitive biopanning approaches with the specific substrates D-glutamate and ATP. From the 60 phage-encoded peptides identified, DNA was sequenced, deduced amino acid sequences aligned and two peptides were synthesized from consensus sequences identified. The UDP-N-acetylmuramyl-L-alanine MurD substrate was synthesized, purified and used to develop a spectrophotometric assay. One peptide synthesized was found to specifically inhibit ATPase activity of MurD. The IC50 value was estimated at 4 microM for the C-7-C MurDp1 peptide. The loop conformation of MurDp1 was shown to be important for the inhibition of the UDP-N-acetylmuramyl-L-alanine:D-glutamate MurD ligase. The linear 12 mers MurD2 peptide has an IC50 value of 15 mM. A conserved amino acid motif was found between MurDp2 and the bacterial glyceraldehyde 3-phosphate dehydrogenase indicating that MurDp2 binds at a protein-protein interacting site. The approach proposed and results obtained suggest that efficient peptide inhibitors as well as protein-protein interaction domains can be identified by phage display.
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Affiliation(s)
- Catherine Paradis-Bleau
- CREFSIP, Département de Biologie Médicale, Faculté de Médecine, Université Laval, Sainte-Foy, Québec, Canada G1K 7P4.
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23
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Barbosa MS, Báo SN, Andreotti PF, de Faria FP, Felipe MSS, dos Santos Feitosa L, Mendes-Giannini MJS, Soares CMDA. Glyceraldehyde-3-phosphate dehydrogenase of Paracoccidioides brasiliensis is a cell surface protein involved in fungal adhesion to extracellular matrix proteins and interaction with cells. Infect Immun 2006; 74:382-9. [PMID: 16368993 PMCID: PMC1346668 DOI: 10.1128/iai.74.1.382-389.2006] [Citation(s) in RCA: 153] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The pathogenic fungus Paracoccidioides brasiliensis causes paracoccidioidomycosis, a pulmonary mycosis acquired by inhalation of fungal airborne propagules, which may disseminate to several organs and tissues, leading to a severe form of the disease. Adhesion to and invasion of host cells are essential steps involved in the infection and dissemination of pathogens. Furthermore, pathogens use their surface molecules to bind to host extracellular matrix components to establish infection. Here, we report the characterization of the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) of P. brasiliensis as an adhesin, which can be related to fungus adhesion and invasion. The P. brasiliensis GAPDH was overexpressed in Escherichia coli, and polyclonal antibody against this protein was obtained. By immunoelectron microscopy and Western blot analysis, GAPDH was detected in the cytoplasm and the cell wall of the yeast phase of P. brasiliensis. The recombinant GAPDH was found to bind to fibronectin, laminin, and type I collagen in ligand far-Western blot assays. Of special note, the treatment of P. brasiliensis yeast cells with anti-GAPDH polyclonal antibody and the incubation of pneumocytes with the recombinant protein promoted inhibition of adherence and internalization of P. brasiliensis to those in vitro-cultured cells. These observations indicate that the cell wall-associated form of the GAPDH in P. brasiliensis could be involved in mediating binding of fungal cells to fibronectin, type I collagen, and laminin, thus contributing to the adhesion of the microorganism to host tissues and to the dissemination of infection.
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Affiliation(s)
- Mônica Santiago Barbosa
- Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiānia, Goiás, Brazil 74001-970
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