1
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Castillo-Blas C, Chester AM, Keen DA, Bennett TD. Thermally activated structural phase transitions and processes in metal-organic frameworks. Chem Soc Rev 2024; 53:3606-3629. [PMID: 38426588 DOI: 10.1039/d3cs01105d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
The structural knowledge of metal-organic frameworks is crucial to the understanding and development of new efficient materials for industrial implementation. This review classifies and discusses recent advanced literature reports on phase transitions that occur during thermal treatments on metal-organic frameworks and their characterisation. Thermally activated phase transitions and procceses are classified according to the temperaturatures at which they occur: high temperature (reversible and non-reversible) and low temperature. In addition, theoretical calculations and modelling approaches employed to better understand these structural phase transitions are also reviewed.
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Affiliation(s)
- Celia Castillo-Blas
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge, CB30FS, UK.
| | - Ashleigh M Chester
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge, CB30FS, UK.
| | - David A Keen
- ISIS Facility, Rutherford Appleton Laboratory, Harwell Campus, OX11 0DE, Didcot, Oxfordshire, UK
| | - Thomas D Bennett
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge, CB30FS, UK.
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2
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Hemmer K, Kronawitter SM, Grover N, Twamley B, Cokoja M, Fischer RA, Kieslich G, Senge MO. Understanding and Controlling Molecular Compositions and Properties in Mixed-Linker Porphyrin Metal-Organic Frameworks. Inorg Chem 2024; 63:2122-2130. [PMID: 38205788 DOI: 10.1021/acs.inorgchem.3c03943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
Abstract
Porphyrin-based metal-organic frameworks (MOFs) are attractive materials for photo- and thermally activated catalysis due to their unique structural features related to the porphyrin moiety, guest-accessible porosity, and high chemical tunability. In this study, we report the synthetic incorporation of nonplanar β-ethyl-functionalized porphyrin linkers into the framework structure of PCN-222, obtaining a solid-solution series of materials with different modified linker contents. Comprehensive analysis by a combination of characterization techniques, such as NMR, UV-vis and IR spectroscopy, powder X-ray diffraction, and N2 sorption analysis, allows for the confirmation of linker incorporation. A detailed structural analysis of intrinsic material properties, such as the thermal response of the different materials, underlines the complexity of synthesizing and understanding such materials. This study presents a blueprint for synthesizing and analyzing porphyrin-based mixed-linker MOF systems and highlights the hurdles of characterizing such materials.
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Affiliation(s)
- Karina Hemmer
- TUM School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Silva M Kronawitter
- TUM School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Nitika Grover
- School of Chemistry, Chair of Organic Chemistry, Trinity Biomedical Sciences Institute, 152-160 Pearse Street, Trinity College Dublin, The University of Dublin, Dublin D02R590, Ireland
| | - Brendan Twamley
- School of Chemistry, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
| | - Mirza Cokoja
- TUM School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Roland A Fischer
- TUM School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Gregor Kieslich
- TUM School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Mathias O Senge
- School of Chemistry, Chair of Organic Chemistry, Trinity Biomedical Sciences Institute, 152-160 Pearse Street, Trinity College Dublin, The University of Dublin, Dublin D02R590, Ireland
- Institute for Advanced Study (TUM-IAS), Focus Group - Molecular and Interfacial Engineering of Organic Nanosystems, Technical University of Munich, Lichtenberg-Str. 2a, 85748 Garching, Germany
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3
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Samperisi L, Zou X, Huang Z. How to get maximum structure information from anisotropic displacement parameters obtained by three-dimensional electron diffraction: an experimental study on metal-organic frameworks. IUCRJ 2022; 9:480-491. [PMID: 35844475 PMCID: PMC9252158 DOI: 10.1107/s2052252522005632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
Three-dimensional electron diffraction (3D ED) has been used for ab initio structure determination of various types of nanocrystals, such as metal-organic frameworks (MOFs), zeolites, metal oxides and organic crystals. These crystals are often obtained as polycrystalline powders, which are too small for single-crystal X-ray diffraction (SCXRD). While it is now possible to obtain accurate atomic positions of nanocrystals by adopting kinematical refinement against 3D ED data, most new structures are refined with isotropic displacement parameters (U eq), which limits the detection of possible structure disorders and atomic motions. Anisotropic displacement parameters (ADPs, Uij ) obtained by anisotropic structure refinement, on the other hand, provide information about the average displacements of atoms from their mean positions in a crystal, which can provide insights with respect to displacive disorder and flexibility. Although ADPs have been obtained from some 3D ED studies of MOFs, they are seldom mentioned or discussed in detail. We report here a detailed study and interpretation of structure models refined anisotropically against 3D ED data. Three MOF samples with different structural complexity and symmetry, namely ZIF-EC1, MIL-140C and Ga(OH)(1,4-ndc) (1,4-ndcH2 is naphthalene-1,4-dicarboxylic acid), were chosen for the studies. We compare the ADPs refined against individual data sets and how they are affected by different data-merging strategies. Based on our results and analysis, we propose strategies for obtaining accurate structure models with interpretable ADPs based on kinematical refinement against 3D ED data. The ADPs of the obtained structure models provide clear and unambiguous information about linker motions in the MOFs.
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Affiliation(s)
- Laura Samperisi
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden 106 91, Sweden
| | - Xiaodong Zou
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden 106 91, Sweden
| | - Zhehao Huang
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden 106 91, Sweden
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4
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Kamencek T, Schrode B, Resel R, Ricco R, Zojer E. Understanding the Origin of the Particularly Small and Anisotropic Thermal Expansion of MOF‐74. ADVANCED THEORY AND SIMULATIONS 2022. [DOI: 10.1002/adts.202200031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tomas Kamencek
- Institute of Solid State Physics Graz University of Technology NAWI Graz Petersgasse 16 Graz 8010 Austria
- Institute of Physical and Theoretical Chemistry Graz University of Technology NAWI Graz Stremayrgasse 9 Graz 8010 Austria
| | | | - Roland Resel
- Institute of Solid State Physics Graz University of Technology NAWI Graz Petersgasse 16 Graz 8010 Austria
| | - Raffaele Ricco
- Institute of Physical and Theoretical Chemistry Graz University of Technology NAWI Graz Stremayrgasse 9 Graz 8010 Austria
- School of Engineering and Technology Asian Institute of Technology 58 Moo 9 Khlong Luang Pathum Thani 12120 Thailand
| | - Egbert Zojer
- Institute of Solid State Physics Graz University of Technology NAWI Graz Petersgasse 16 Graz 8010 Austria
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5
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Li Q, Lin K, Liu Z, Hu L, Cao Y, Chen J, Xing X. Chemical Diversity for Tailoring Negative Thermal Expansion. Chem Rev 2022; 122:8438-8486. [PMID: 35258938 DOI: 10.1021/acs.chemrev.1c00756] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Negative thermal expansion (NTE), referring to the lattice contraction upon heating, has been an attractive topic of solid-state chemistry and functional materials. The response of a lattice to the temperature field is deeply rooted in its structural features and is inseparable from the physical properties. For the past 30 years, great efforts have been made to search for NTE compounds and control NTE performance. The demands of different applications give rise to the prominent development of new NTE systems covering multifarious chemical substances and many preparation routes. Even so, the intelligent design of NTE structures and efficient tailoring for lattice thermal expansion are still challenging. However, the diverse chemical routes to synthesize target compounds with featured structures provide a large number of strategies to achieve the desirable NTE behaviors with related properties. The chemical diversity is reflected in the wide regulating scale, flexible ways of introduction, and abundant structure-function insights. It inspires the rapid growth of new functional NTE compounds and understanding of the physical origins. In this review, we provide a systematic overview of the recent progress of chemical diversity in the tailoring of NTE. The efficient control of lattice and deep structural deciphering are carefully discussed. This comprehensive summary and perspective for chemical diversity are helpful to promote the creation of functional zero-thermal-expansion (ZTE) compounds and the practical utilization of NTE.
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Affiliation(s)
- Qiang Li
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Kun Lin
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Zhanning Liu
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Lei Hu
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Yili Cao
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Jun Chen
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
| | - Xianran Xing
- Beijing Advanced Innovation Center for Materials Genome Engineering, Institute of Solid State Chemistry, University of Science and Technology Beijing, Beijing 100083, China
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6
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Vandenhaute S, Rogge SMJ, Van Speybroeck V. Large-Scale Molecular Dynamics Simulations Reveal New Insights Into the Phase Transition Mechanisms in MIL-53(Al). Front Chem 2021; 9:718920. [PMID: 34513797 PMCID: PMC8429608 DOI: 10.3389/fchem.2021.718920] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/13/2021] [Indexed: 01/16/2023] Open
Abstract
Soft porous crystals have the ability to undergo large structural transformations upon exposure to external stimuli while maintaining their long-range structural order, and the size of the crystal plays an important role in this flexible behavior. Computational modeling has the potential to unravel mechanistic details of these phase transitions, provided that the models are representative for experimental crystal sizes and allow for spatially disordered phenomena to occur. Here, we take a major step forward and enable simulations of metal-organic frameworks containing more than a million atoms. This is achieved by exploiting the massive parallelism of state-of-the-art GPUs using the OpenMM software package, for which we developed a new pressure control algorithm that allows for fully anisotropic unit cell fluctuations. As a proof of concept, we study the transition mechanism in MIL-53(Al) under various external pressures. In the lower pressure regime, a layer-by-layer mechanism is observed, while at higher pressures, the transition is initiated at discrete nucleation points and temporarily induces various domains in both the open and closed pore phases. The presented workflow opens the possibility to deduce transition mechanism diagrams for soft porous crystals in terms of the crystal size and the strength of the external stimulus.
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Affiliation(s)
| | - Sven M J Rogge
- Center for Molecular Modeling (CMM), Ghent University, Ghent, Belgium
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7
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Allendorf MD, Stavila V, Witman M, Brozek CK, Hendon CH. What Lies beneath a Metal-Organic Framework Crystal Structure? New Design Principles from Unexpected Behaviors. J Am Chem Soc 2021; 143:6705-6723. [PMID: 33904302 DOI: 10.1021/jacs.0c10777] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The rational design principles established for metal-organic frameworks (MOFs) allow clear structure-property relationships, fueling expansive growth for energy storage and conversion, catalysis, and beyond. However, these design principles are based on the assumption of compositional and structural rigidity, as measured crystallographically. Such idealization of MOF structures overlooks subtle chemical aspects that can lead to departures from structure-based chemical intuition. In this Perspective, we identify unexpected behavior of MOFs through literature examples. Based on this analysis, we conclude that departures from ideality are not uncommon. Whereas linker topology and metal coordination geometry are useful starting points for understanding MOF properties, we anticipate that deviations from the idealized crystal representation will be necessary to explain important and unexpected behaviors. Although this realization reinforces the notion that MOFs are highly complex materials, it should also stimulate a broader reexamination of the literature to identify corollaries to existing design rules and reveal new structure-property relationships.
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Affiliation(s)
- Mark D Allendorf
- Chemistry, Combustion, and Materials Science Center, Sandia National Laboratories, Livermore, California 94551, United States
| | - Vitalie Stavila
- Chemistry, Combustion, and Materials Science Center, Sandia National Laboratories, Livermore, California 94551, United States
| | - Matthew Witman
- Chemistry, Combustion, and Materials Science Center, Sandia National Laboratories, Livermore, California 94551, United States
| | - Carl K Brozek
- Department of Chemistry and Biochemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403, United States.,Oregon Center for Electrochemistry, University of Oregon, Eugene, Oregon 97403, United States
| | - Christopher H Hendon
- Department of Chemistry and Biochemistry and Materials Science Institute, University of Oregon, Eugene, Oregon 97403, United States
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8
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Juneja N, Unruh DK, Groeneman RH, Hutchins KM. Positive thermal expansion facilitates the formation of argentophilic forces following an order–disorder phase transition. NEW J CHEM 2021. [DOI: 10.1039/d1nj00312g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Variable-temperature studies of the 0D silver-based complex [Ag2(CF3SO3)2(4-SB)4] reveal formation of argentophilic forces upon warming due to a phase transition.
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Affiliation(s)
- Navkiran Juneja
- Department of Chemistry and Biochemistry
- Texas Tech University
- Lubbock
- USA
| | - Daniel K. Unruh
- Department of Chemistry and Biochemistry
- Texas Tech University
- Lubbock
- USA
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9
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Andreeva AB, Le KN, Chen L, Kellman ME, Hendon CH, Brozek CK. Soft Mode Metal-Linker Dynamics in Carboxylate MOFs Evidenced by Variable-Temperature Infrared Spectroscopy. J Am Chem Soc 2020; 142:19291-19299. [DOI: 10.1021/jacs.0c09499] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Anastasia B. Andreeva
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Khoa N. Le
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Lihaokun Chen
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Michael E. Kellman
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Christopher H. Hendon
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Carl K. Brozek
- Department of Chemistry and Biochemistry, Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
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10
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Kollias L, Cantu DC, Glezakou V, Rousseau R, Salvalaglio M. On the Role of Enthalpic and Entropic Contributions to the Conformational Free Energy Landscape of MIL‐101(Cr) Secondary Building Units. ADVANCED THEORY AND SIMULATIONS 2020. [DOI: 10.1002/adts.202000092] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Loukas Kollias
- Thomas Young Centre and Department of Chemical Engineering University College London London WC1E 7JE UK
| | - David C. Cantu
- Chemical and Materials Engineering Department University of Nevada Reno Reno NV 89557 USA
| | | | - Roger Rousseau
- Basic and Applied Molecular Foundations Pacific Northwest National Laboratory Richland WA 99352 USA
| | - Matteo Salvalaglio
- Thomas Young Centre and Department of Chemical Engineering University College London London WC1E 7JE UK
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11
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Wang J, Wang Y, Hu H, Yang Q, Cai J. From metal-organic frameworks to porous carbon materials: recent progress and prospects from energy and environmental perspectives. NANOSCALE 2020; 12:4238-4268. [PMID: 32039421 DOI: 10.1039/c9nr09697c] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Metal-organic frameworks (MOFs) have emerged as promising materials in the areas of gas storage, magnetism, luminescence, and catalysis owing to their superior property of having highly crystalline structures. However, MOF stability toward heat or humidity is considerably less as compared to carbons because they are constructed from the assembly of ligands with metal ions or clusters via coordination bonds. Transforming MOFs into carbons is bringing the novel potential for MOFs to achieve industrialization, and carbons with controlled pore sizes and surface doping are one of the most important porous materials. By selecting MOFs as a precursor or template, carbons with heteroatom doping and well-developed pores can be achieved. In this review, we discussed the state-of-art study progress made in the new development of MOF-derived metal-free porous carbons. In particular, the potential use of metal-free carbons from environmental and energy perspectives, such as adsorption, supercapacitors, and catalysts, were analyzed in detail. Moreover, an outlook for the sustainable development of MOF-derived porous carbons in the future was also presented.
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Affiliation(s)
- Jing Wang
- School of Chemical Engineering, Xiangtan University, Xiangtan 411105, China.
| | - Yuelin Wang
- School of Chemical Engineering, Xiangtan University, Xiangtan 411105, China.
| | - Hongbo Hu
- School of Chemical Engineering, Xiangtan University, Xiangtan 411105, China.
| | - Qipeng Yang
- Department of Chemical Engineering, Imperial College London, London SW7 2AZ, UK
| | - Jinjun Cai
- School of Chemical Engineering, Xiangtan University, Xiangtan 411105, China. and School of Engineering Materials & Science, Queen Mary University of London, London E1 4NS, UK
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12
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Wieme J, Vandenbrande S, Lamaire A, Kapil V, Vanduyfhuys L, Van Speybroeck V. Thermal Engineering of Metal-Organic Frameworks for Adsorption Applications: A Molecular Simulation Perspective. ACS APPLIED MATERIALS & INTERFACES 2019; 11:38697-38707. [PMID: 31556593 PMCID: PMC6818952 DOI: 10.1021/acsami.9b12533] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 09/26/2019] [Indexed: 05/29/2023]
Abstract
Thermal engineering of metal-organic frameworks for adsorption-based applications is very topical in view of their industrial potential, in particular, since heat management and thermal stability have been identified as important obstacles. Hence, a fundamental understanding of the structural and chemical features underpinning their intrinsic thermal properties is highly sought-after. Herein, we investigate the nanoscale behavior of a diverse set of frameworks using molecular simulation techniques and critically compare properties such as thermal conductivity, heat capacity, and thermal expansion with other classes of materials. Furthermore, we propose a hypothetical thermodynamic cycle to estimate the temperature rise associated with adsorption for the most important greenhouse and energy-related gases (CO2 and CH4). This macroscopic response on the heat of adsorption connects the intrinsic thermal properties with the adsorption properties and allows us to evaluate their importance.
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Affiliation(s)
- Jelle Wieme
- Center for Molecular
Modeling, Ghent University, Tech Lane Ghent Science Park Campus
A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Steven Vandenbrande
- Center for Molecular
Modeling, Ghent University, Tech Lane Ghent Science Park Campus
A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Aran Lamaire
- Center for Molecular
Modeling, Ghent University, Tech Lane Ghent Science Park Campus
A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Venkat Kapil
- Laboratory
of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Louis Vanduyfhuys
- Center for Molecular
Modeling, Ghent University, Tech Lane Ghent Science Park Campus
A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Veronique Van Speybroeck
- Center for Molecular
Modeling, Ghent University, Tech Lane Ghent Science Park Campus
A, Technologiepark 46, 9052 Zwijnaarde, Belgium
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13
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Lama P, Hazra A, Barbour LJ. Accordion and layer-sliding motion to produce anomalous thermal expansion behaviour in 2D-coordination polymers. Chem Commun (Camb) 2019; 55:12048-12051. [PMID: 31535685 DOI: 10.1039/c9cc06634a] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solvent-free (1) and solvated (2) 2D-coordination polymers have been synthesised by varying the amount of solvent during crystallisation. 1 undergoes a unique accordion motion of 2D zig-zag interwoven layers whereas 2 experiences layer-sliding within 2D layers to produce anomalous thermal expansion behaviour.
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Affiliation(s)
- Prem Lama
- School of Chemical Sciences, Goa University, Taleigao Plateau, Taleigao 403206, Goa, India.
| | - Arpan Hazra
- Department of Chemistry and Polymer Science, University of Stellenbosch, Matieland 7602, Stellenbosch, South Africa.
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, University of Stellenbosch, Matieland 7602, Stellenbosch, South Africa.
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14
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Dubbeldam D, Walton KS, Vlugt TJH, Calero S. Design, Parameterization, and Implementation of Atomic Force Fields for Adsorption in Nanoporous Materials. ADVANCED THEORY AND SIMULATIONS 2019. [DOI: 10.1002/adts.201900135] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- David Dubbeldam
- Van 't Hoff Institute for Molecular SciencesUniversity of AmsterdamScience Park 904 1098XH Amsterdam The Netherlands
| | - Krista S. Walton
- School of Chemical & Biomolecular EngineeringGeorgia Institute of Technology311 Ferst Dr. NW Atlanta GA 30332‐0100 USA
| | - Thijs J. H. Vlugt
- Delft University of TechnologyProcess & Energy DepartmentLeeghwaterstraat 39 2628CB Delft The Netherlands
| | - Sofia Calero
- Department of PhysicalChemical and Natural SystemsUniversity Pablo de OlavideSevilla 41013 Spain
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15
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Baxter SJ, Schneemann A, Ready AD, Wijeratne P, Wilkinson AP, Burtch NC. Tuning Thermal Expansion in Metal–Organic Frameworks Using a Mixed Linker Solid Solution Approach. J Am Chem Soc 2019; 141:12849-12854. [DOI: 10.1021/jacs.9b06109] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Samuel J. Baxter
- Sandia National Laboratory, Livermore, California 94550, United States
| | | | - Austin D. Ready
- Sandia National Laboratory, Livermore, California 94550, United States
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16
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Liu MM, Feng YR, Wang YX, Yu YZ, Sun L, Zhang XM. Conformational flexibility Tuned positive thermal expansion in Li-based 3D metal−organic framework. INORG CHEM COMMUN 2019. [DOI: 10.1016/j.inoche.2019.04.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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17
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Schneider C, Bodesheim D, Ehrenreich MG, Crocellà V, Mink J, Fischer RA, Butler KT, Kieslich G. Tuning the Negative Thermal Expansion Behavior of the Metal–Organic Framework Cu3BTC2 by Retrofitting. J Am Chem Soc 2019; 141:10504-10509. [DOI: 10.1021/jacs.9b04755] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christian Schneider
- Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, Garching D-85748, Germany
| | - David Bodesheim
- Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, Garching D-85748, Germany
| | - Michael G. Ehrenreich
- Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, Garching D-85748, Germany
| | - Valentina Crocellà
- Department of Chemistry, NIS and INSTM Centre of Reference, University of Turin, Via Quarello 15, Torino I-10135, Italy
| | - János Mink
- Institute of Materials and Environmental Chemistry, Research Center of Natural Sciences, Hungarian Academy of Sciences, Budapest H-1519, Hungary
- Research Institute for Biomolecular and Chemical Engineering, University of Pannonia, Veszprém H-8200, Hungary
| | - Roland A. Fischer
- Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, Garching D-85748, Germany
| | - Keith T. Butler
- Scientific Computing Department, Rutherford Appleton Laboratory, Harwell Campus, Didcot OX11 0QX, United Kingdom
| | - Gregor Kieslich
- Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, Garching D-85748, Germany
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18
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Eckhoff M, Behler J. From Molecular Fragments to the Bulk: Development of a Neural Network Potential for MOF-5. J Chem Theory Comput 2019; 15:3793-3809. [PMID: 31091097 DOI: 10.1021/acs.jctc.8b01288] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The development of first-principles-quality reactive atomistic potentials for organic-inorganic hybrid materials is still a substantial challenge because of the very different physics of the atomic interactions-from covalent via ionic bonding to dispersion-that have to be described in an accurate and balanced way. In this work we used a prototypical metal-organic framework, MOF-5, as a benchmark case to investigate the applicability of high-dimensional neural network potentials (HDNNPs) to this class of materials. In HDNNPs, which belong to the class of machine learning potentials, the energy is constructed as a sum of environment-dependent atomic energy contributions. We demonstrate that by the use of this approach it is possible to obtain a high-quality potential for the periodic MOF-5 crystal using density functional theory (DFT) reference calculations of small molecular fragments only. The resulting HDNNP, which has a root-mean-square error (RMSE) of 1.6 meV/atom for the energies of molecular fragments not included in the training set, is able to provide the equilibrium lattice constant of the bulk MOF-5 structure with an error of about 0.1% relative to DFT, and also, the negative thermal expansion behavior is accurately predicted. The total energy RMSE of periodic structures that are completely absent in the training set is about 6.5 meV/atom, with errors on the order of 2 meV/atom for energy differences. We show that in contrast to energy differences, achieving a high accuracy for total energies requires careful variation of the stoichiometries of the training structures to avoid energy offsets, as atomic energies are not physical observables. The forces, which have RMSEs of about 94 meV/ a0 for the molecular fragments and 130 meV/ a0 for bulk structures not included in the training set, are insensitive to such offsets. Therefore, forces, which are the relevant properties for molecular dynamics simulations, provide a realistic estimate of the accuracy of atomistic potentials.
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Affiliation(s)
- Marco Eckhoff
- Universität Göttingen , Institut für Physikalische Chemie, Theoretische Chemie , Tammannstraße 6 , D-37077 Göttingen , Germany
| | - Jörg Behler
- Universität Göttingen , Institut für Physikalische Chemie, Theoretische Chemie , Tammannstraße 6 , D-37077 Göttingen , Germany
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19
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Kapil V, Wieme J, Vandenbrande S, Lamaire A, Van Speybroeck V, Ceriotti M. Modeling the Structural and Thermal Properties of Loaded Metal–Organic Frameworks. An Interplay of Quantum and Anharmonic Fluctuations. J Chem Theory Comput 2019; 15:3237-3249. [DOI: 10.1021/acs.jctc.8b01297] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Venkat Kapil
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
| | - Jelle Wieme
- Center for Molecular Modeling, Ghent University, Tech Lane Ghent Science Park Campus A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Steven Vandenbrande
- Center for Molecular Modeling, Ghent University, Tech Lane Ghent Science Park Campus A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Aran Lamaire
- Center for Molecular Modeling, Ghent University, Tech Lane Ghent Science Park Campus A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Veronique Van Speybroeck
- Center for Molecular Modeling, Ghent University, Tech Lane Ghent Science Park Campus A, Technologiepark 46, 9052 Zwijnaarde, Belgium
| | - Michele Ceriotti
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland
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20
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Gonzalez-Nelson A, Coudert FX, van der Veen MA. Rotational Dynamics of Linkers in Metal⁻Organic Frameworks. NANOMATERIALS (BASEL, SWITZERLAND) 2019; 9:E330. [PMID: 30832298 PMCID: PMC6474009 DOI: 10.3390/nano9030330] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 02/14/2019] [Accepted: 02/18/2019] [Indexed: 02/07/2023]
Abstract
Among the numerous fascinating properties of metal⁻organic frameworks (MOFs), their rotational dynamics is perhaps one of the most intriguing, with clear consequences for adsorption and separation of molecules, as well as for optical and mechanical properties. A closer look at the rotational mobility in MOF linkers reveals that it is not only a considerably widespread phenomenon, but also a fairly diverse one. Still, the impact of these dynamics is often understated. In this review, we address the various mechanisms of linker rotation reported in the growing collection of literature, followed by a highlight of the methods currently used in their study, and we conclude with the impacts that such dynamics have on existing and future applications.
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Affiliation(s)
- Adrian Gonzalez-Nelson
- Catalysis Engineering, Department of Chemical Engineering, Delft University of Technology, 2629 Delft, The Netherlands.
- DPI, P.O. Box 902, 5600 AX Eindhoven, The Netherlands.
| | - François-Xavier Coudert
- Chimie ParisTech, PSL University, CNRS, Institut de Recherche de Chimie Paris, 75005 Paris, France.
| | - Monique A van der Veen
- Catalysis Engineering, Department of Chemical Engineering, Delft University of Technology, 2629 Delft, The Netherlands.
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21
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Rogacka J, Formalik F, Triguero AL, Firlej L, Kuchta B, Calero S. Intermediate states approach for adsorption studies in flexible metal–organic frameworks. Phys Chem Chem Phys 2019; 21:3294-3303. [DOI: 10.1039/c8cp06817h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Adsorption studies in flexible metal–organic frameworks are challenging and time-consuming.
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Affiliation(s)
- Justyna Rogacka
- Group of Bioprocess and Biomedical Engineering
- Faculty of Chemistry
- Wroclaw University of Science and Technology
- 50-370 Wroclaw
- Poland
| | - Filip Formalik
- Group of Bioprocess and Biomedical Engineering
- Faculty of Chemistry
- Wroclaw University of Science and Technology
- 50-370 Wroclaw
- Poland
| | - Azahara L. Triguero
- Department of Physical, Chemical, and Natural Systems
- Universidad Pablo de Olavide
- Seville
- Spain
| | - Lucyna Firlej
- Laboratoire Charles Coulomb, UMR 5221
- Université de Montpellier, CNRS
- Montpellier
- France
| | - Bogdan Kuchta
- Group of Bioprocess and Biomedical Engineering
- Faculty of Chemistry
- Wroclaw University of Science and Technology
- 50-370 Wroclaw
- Poland
| | - Sofia Calero
- Department of Physical, Chemical, and Natural Systems
- Universidad Pablo de Olavide
- Seville
- Spain
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22
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Liu Z, Jiang X, Wang C, Liu C, Lin Z, Deng J, Chen J, Xing X. Near-zero thermal expansion coordinated with geometric flexibility and π⋯π interaction in anisotropic [Zn8(SiO4)(m-BDC)6]n. Inorg Chem Front 2019. [DOI: 10.1039/c9qi00354a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
A MOF material with intrinsic volumetric near-ZTE over a wide temperature range has been reported. The near-ZTE behavior derives from the synergistic effect of geometric deformation and π⋯π interaction.
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Affiliation(s)
- Zhanning Liu
- Beijing Advanced Innovation Center for Materials Genome Engineering
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Xingxing Jiang
- Key Lab of Functional Crystals and Laser Technology
- Technical Institute of Physics and Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- China
| | - Chiming Wang
- Beijing Key Laboratory for Science and Application of Function Molecular and Crystalline Materials
- University of Science and Technology Beijing
- Beijing
- China
| | - Chenxi Liu
- Beijing Key Laboratory for Science and Application of Function Molecular and Crystalline Materials
- University of Science and Technology Beijing
- Beijing
- China
| | - Zheshuai Lin
- Key Lab of Functional Crystals and Laser Technology
- Technical Institute of Physics and Chemistry
- Chinese Academy of Sciences
- Beijing 100190
- China
| | - Jinxia Deng
- Beijing Advanced Innovation Center for Materials Genome Engineering
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Jun Chen
- Beijing Advanced Innovation Center for Materials Genome Engineering
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Xianran Xing
- Beijing Advanced Innovation Center for Materials Genome Engineering
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
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23
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Gładysiak A, Moosavi SM, Sarkisov L, Smit B, Stylianou KC. Guest-dependent negative thermal expansion in a lanthanide-based metal–organic framework. CrystEngComm 2019. [DOI: 10.1039/c9ce00941h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A lanthanide-based metal–organic framework (MOF) named SION-2, displays strong and tuneable uniaxial negative thermal expansion (NTE).
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Affiliation(s)
- Andrzej Gładysiak
- Laboratory of Molecular Simulation (LSMO)
- Institut des Sciences et Ingénierie Chimiques (ISIC)
- École Polytechnique Fédérale de Lausanne (EPFL) Valais
- 1951 Sion
- Switzerland
| | - Seyed Mohamad Moosavi
- Laboratory of Molecular Simulation (LSMO)
- Institut des Sciences et Ingénierie Chimiques (ISIC)
- École Polytechnique Fédérale de Lausanne (EPFL) Valais
- 1951 Sion
- Switzerland
| | - Lev Sarkisov
- Institute for Materials and Processes
- School of Engineering
- The University of Edinburgh
- UK
| | - Berend Smit
- Laboratory of Molecular Simulation (LSMO)
- Institut des Sciences et Ingénierie Chimiques (ISIC)
- École Polytechnique Fédérale de Lausanne (EPFL) Valais
- 1951 Sion
- Switzerland
| | - Kyriakos C. Stylianou
- Laboratory of Molecular Simulation (LSMO)
- Institut des Sciences et Ingénierie Chimiques (ISIC)
- École Polytechnique Fédérale de Lausanne (EPFL) Valais
- 1951 Sion
- Switzerland
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24
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Heinen J, Dubbeldam D. On flexible force fields for metal-organic frameworks: Recent developments and future prospects. WILEY INTERDISCIPLINARY REVIEWS. COMPUTATIONAL MOLECULAR SCIENCE 2018; 8:e1363. [PMID: 30008812 PMCID: PMC6032946 DOI: 10.1002/wcms.1363] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2017] [Revised: 12/11/2017] [Accepted: 12/15/2017] [Indexed: 11/09/2022]
Abstract
Classical force field simulations can be used to study structural, diffusion, and adsorption properties of metal-organic frameworks (MOFs). To account for the dynamic behavior of the material, parameterization schemes have been developed to derive force constants and the associated reference values by fitting on ab initio energies, vibrational frequencies, and elastic constants. Here, we review recent developments in flexible force field models for MOFs. Existing flexible force field models are generally able to reproduce the majority of experimentally observed structural and dynamic properties of MOFs. The lack of efficient sampling schemes for capturing stimuli-driven phase transitions, however, currently limits the full predictive potential of existing flexible force fields from being realized. This article is categorized under: Structure and Mechanism > Computational Materials ScienceMolecular and Statistical Mechanics > Molecular Mechanics.
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Affiliation(s)
- Jurn Heinen
- Van ’t Hoff Institute for Molecular SciencesUniversity of AmsterdamAmsterdamThe Netherlands
| | - David Dubbeldam
- Van ’t Hoff Institute for Molecular SciencesUniversity of AmsterdamAmsterdamThe Netherlands
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25
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Mondal S, Mazumdar C, Ranganathan R. Transverse vibration driven large uniaxial negative and zero thermal expansion in boron bridged REPt 3B framework materials. Phys Chem Chem Phys 2018; 20:14876-14883. [PMID: 29781481 DOI: 10.1039/c8cp00934a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work anomalous uniaxial thermal expansion behaviour at low temperatures along the c-direction of the tetragonal phase of different members of the antiperovskite REPt3B (RE = Sm, Gd-Tm) compounds is reported. Negative or zero thermal expansion (NTE/ZTE) behaviour in these compounds arises due to the transverse vibration of boron atoms in the linear Pt-B-Pt linkage. The coefficient of thermal expansion along the c-axis tends to become more negative in annealed compounds in comparison to those estimated for as-cast samples. While the as-cast TmPt3B and HoPt3B exhibit essentially ZTE behaviour, the NTE coefficient of annealed GdPt3B (∼-28 ppm K-1) is found to be even larger than that of the well known framework material ZrW2O8 (∼-9 ppm K-1) reported in the literature.
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Affiliation(s)
- Sudipta Mondal
- Condensed Matter Physics Division, Saha Institute of Nuclear Physics, 1/AF Bidhannagar, Kolkata 700064, India.
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26
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Luna-Triguero A, Vicent-Luna JM, Calero S. Phase Transition Induced by Gas Adsorption in Metal-Organic Frameworks. Chemistry 2018; 24:8530-8534. [DOI: 10.1002/chem.201801157] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Indexed: 11/05/2022]
Affiliation(s)
- Azahara Luna-Triguero
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. Utrera Km 1 ES-41013 Seville Spain
| | - Jose Manuel Vicent-Luna
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. Utrera Km 1 ES-41013 Seville Spain
| | - Sofia Calero
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. Utrera Km 1 ES-41013 Seville Spain
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27
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Bueno-Perez R, Balestra SRG, Camblor MA, Min JG, Hong SB, Merkling PJ, Calero S. Influence of Flexibility on the Separation of Chiral Isomers in STW-Type Zeolite. Chemistry 2018; 24:4121-4132. [DOI: 10.1002/chem.201705627] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Indexed: 02/07/2023]
Affiliation(s)
- Rocio Bueno-Perez
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. de Utrera, km.1 41013 Seville Spain
| | - Salvador R. G. Balestra
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. de Utrera, km.1 41013 Seville Spain
| | - Miguel A. Camblor
- Instituto de Ciencia de Materiales de Madrid (ICMM); Consejo Superior de Investigaciones Científicas (CSIC); Sor Juana Inés de la Cruz 3 28049 Madrid Spain
| | - Jung Gi Min
- Division of Environmental Science and Engineering; Center for Ordered Nanoporous Materials Synthesis, POSTECH; 37673 Pohang Korea
| | - Suk Bong Hong
- Division of Environmental Science and Engineering; Center for Ordered Nanoporous Materials Synthesis, POSTECH; 37673 Pohang Korea
| | - Patrick J. Merkling
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. de Utrera, km.1 41013 Seville Spain
| | - Sofia Calero
- Department of Physical, Chemical and Natural Systems; Universidad Pablo de Olavide; Ctra. de Utrera, km.1 41013 Seville Spain
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28
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Saha BK, Rather SA, Saha A. Dimensionality of a Coordination Polymer as a Tool To Control Thermal Expansion in a Polymorphic Coordination Compound. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700457] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Binoy K. Saha
- Department of Chemistry; Pondicherry University; 605014 Puducherry India
| | - Sumair A. Rather
- Department of Chemistry; Pondicherry University; 605014 Puducherry India
| | - Arijit Saha
- Department of Chemistry; Pondicherry University; 605014 Puducherry India
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29
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Liu Z, Liu C, Li Q, Chen J, Xing X. Spring-like motion caused large anisotropic thermal expansion in nonporous M(eim)2(M = Zn, Cd). Phys Chem Chem Phys 2017; 19:24436-24439. [DOI: 10.1039/c7cp03937a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Spring-like thermal motion caused large anisotropic thermal expansion in nonporous coordination polymers.
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Affiliation(s)
- Zhanning Liu
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Chenxi Liu
- Beijing Key Laboratory for Science and Application of Function Molecular and Crystalline Materials
- University of Science and Technology Beijing
- Beijing
- China
| | - Qiang Li
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Jun Chen
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
| | - Xianran Xing
- Department of Physical Chemistry
- University of Science and Technology Beijing
- Beijing
- China
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