1
|
Hinojosa-Alvarez S, Mendoza-Portillo V, Chavez-Santoscoy RA, Hernández-Pérez J, Felix-Ceniceros A, Magallón-Gayón E, Mar-Silva AF, Ochoa-Zavala M, Díaz-Jaimes P. The draft genome assembly of the cosmopolitan pelagic fish dolphinfish Coryphaena hippurus. G3 (BETHESDA, MD.) 2025; 15:jkaf059. [PMID: 40102961 PMCID: PMC12060228 DOI: 10.1093/g3journal/jkaf059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 02/27/2025] [Accepted: 03/01/2025] [Indexed: 03/20/2025]
Abstract
For the first time, the complete genome assembly of the dolphinfish (Coryphaena hippurus), a tropical cosmopolitan species with commercial fishing importance was sequenced. Using a combination of Illumina and Nanopore sequencing technologies, a draft genome of 497.8 Mb was assembled into 6,044 contigs, with an N50 of 200.9 kb and a BUSCO genome completeness score of 89%. This high-quality genome assembly provides a valuable resource to study adaptive evolutionary processes and supports conservation and management strategies for this ecologically and economically significant species.
Collapse
Affiliation(s)
- Silvia Hinojosa-Alvarez
- Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Campus Monterrey, Ave. Eugenio Garza Sada 2501 Sur, Monterrey 64849, México
| | - Verónica Mendoza-Portillo
- Unidad Académica de Ecología y Biodiversidad Acuática, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Circuito Interior s/n, Ciudad Universitaria, Ciudad de México, C.P. 04510, México
| | - Rocío Alejandra Chavez-Santoscoy
- Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Campus Monterrey, Ave. Eugenio Garza Sada 2501 Sur, Monterrey 64849, México
| | - Jesús Hernández-Pérez
- Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Campus Monterrey, Ave. Eugenio Garza Sada 2501 Sur, Monterrey 64849, México
| | - Andrea Felix-Ceniceros
- Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Campus Monterrey, Ave. Eugenio Garza Sada 2501 Sur, Monterrey 64849, México
| | - Erika Magallón-Gayón
- Tecnologico de Monterrey, Escuela de Ingenieria y Ciencias, Campus Monterrey, Ave. Eugenio Garza Sada 2501 Sur, Monterrey 64849, México
| | - Adan Fernando Mar-Silva
- Unidad Académica de Ecología y Biodiversidad Acuática, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Circuito Interior s/n, Ciudad Universitaria, Ciudad de México, C.P. 04510, México
| | - Maried Ochoa-Zavala
- Escuela Nacional de Estudios Superiores, Unidad Morelia, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro No. 8701. Col. Ex Hacienda de San José de la Huerta. Morelia, Michoacán C.P. 58190, México
| | - Píndaro Díaz-Jaimes
- Unidad Académica de Ecología y Biodiversidad Acuática, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Circuito Interior s/n, Ciudad Universitaria, Ciudad de México, C.P. 04510, México
| |
Collapse
|
2
|
Blewett TA, Ackerly KL, Schlenker LS, Martin S, Nielsen KM. Implications of biotic factors for toxicity testing in laboratory studies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168220. [PMID: 37924878 DOI: 10.1016/j.scitotenv.2023.168220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 10/25/2023] [Accepted: 10/28/2023] [Indexed: 11/06/2023]
Abstract
There is an emerging call from scientists globally to advance the environmental relevance of laboratory studies, particularly within the field of ecotoxicology. To answer this call, we must carefully examine and elucidate the shortcomings of standardized toxicity testing methods that are used in the derivation of toxicity values and regulatory criteria. As a consequence of rapidly accelerating climate change, the inclusion of abiotic co-stressors are increasingly being incorporated into toxicity studies, with the goal of improving the representativeness of laboratory-derived toxicity values used in ecological risk assessments. However, much less attention has been paid to the influence of biotic factors that may just as meaningfully impact our capacity to evaluate and predict risks within impacted ecosystems. Therefore, the overarching goal is to highlight key biotic factors that should be taken into consideration during the experimental design and model selection phase. SYNOPSIS: Scientists are increasingly finding that lab reared results in toxicology might not be reflective of the external wild environment, we highlight in this review some key considerations when working between the lab and field.
Collapse
Affiliation(s)
- Tamzin A Blewett
- University of Alberta, Department of Biological Sciences, Canada.
| | - Kerri Lynn Ackerly
- The University of Texas at Austin, Marine Science Institute, United States of America
| | - Lela S Schlenker
- East Carolina University, Department of Biology, United States of America
| | - Sidney Martin
- University of Alberta, Department of Biological Sciences, Canada
| | - Kristin M Nielsen
- The University of Texas at Austin, Marine Science Institute, United States of America
| |
Collapse
|
3
|
Zhao J, Cao L, Wang X, Huo H, Lin H, Wang Q, Yang X, Vogel F, Li W, Lin Z, Zhang P. MOF@Polydopamine-incorporated membrane with high permeability and mechanical property for efficient fouling-resistant and oil/water separation. ENVIRONMENTAL RESEARCH 2023; 236:116685. [PMID: 37467944 DOI: 10.1016/j.envres.2023.116685] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 07/06/2023] [Accepted: 07/15/2023] [Indexed: 07/21/2023]
Abstract
Metal organic frameworks (MOFs) have demonstrated great potential for their favorable impacts on the performance of water treatment membranes. Herein, the novel nanoparticles based on both nanoporous MOFs and organic PDA layer was exploited as a novel dopant for the fabrication of PES ultrafiltration (UF) membranes. The PDA was synthesized via oxidative self-polymerization under alkaline conditions and formed adhesive coatings on dispersed MOF. The properties of resulting membranes on the porosity, membrane morphology, hydrophilicity, permeability and anti-fouling performance were adequately investigated. The membranes incorporated with MOF@PDA exhibited exceptionally high permeability (209.02 L m-2·h-1), which is approximately 6 times higher than that of the pure PES membrane, and high BSA rejection (99.12%). Notably, the mechanical property and hydrophilicity of the PES membrane were both enhanced by MOF@PDA, and it has been demonstrated that greater hydrophilicity prevents fouling under practical conditions, which results in significant improvements in flux recovery ratio (FRR) (82%). In addition, the modified PES membranes were used to purify the oil/water emulsion, and the results indicates that the membranes have high permeability and rejection of oil/water emulsion, showing its great promise in practical oily sewage remediation.
Collapse
Affiliation(s)
- Jiahui Zhao
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Lin Cao
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Xiao Wang
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Haoling Huo
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Huaijun Lin
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Qiwei Wang
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Xusheng Yang
- Department of Industrial and Systems Engineering, Research Institute for Advanced Manufacturing, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Florian Vogel
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Wei Li
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China
| | - Zhidan Lin
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China.
| | - Peng Zhang
- Institute of Advanced Wear & Corrosion Resistant and Functional Materials, Jinan University, Guangzhou, 510632, China.
| |
Collapse
|
4
|
Sun J, Li R, Wang X, Zhao C, Song Q, Liu F, Wang Z, Liu C, Zhang X. Marine oil spill remediation by Candelilla wax modified coal fly ash cenospheres. CHEMOSPHERE 2023; 330:138619. [PMID: 37031841 DOI: 10.1016/j.chemosphere.2023.138619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 03/24/2023] [Accepted: 04/04/2023] [Indexed: 05/14/2023]
Abstract
Biodegradable candelilla wax (CW) was creatively used for hydrophobic modification of coal fly ash cenospheres (FACs), a waste product from thermal power plants, and a new spherical hollow particulate adsorbent with fast oil adsorption rate and easy agglomeration was prepared. CW was confirmed to physically coat FACs and the optimum mass of wax added to 3 g of FACs was 0.05 g. From a series of batch scale experiments, CW-FACs were found to adsorb oil, reaching adsorption efficiency of 80.6% within 10 s, and aggregate into floating clumps which were easily removed from the water's surface. The oil adsorption efficiency was highly dependent on hydrophobicity of the used adsorbent, the adsorption of Venezuela oil onto CW-FACs was found to be a homogenous monolayer, and the capacity and intensity of the adsorption decreased as temperature increased from 10 to 40 °C. The Langmuir isotherm model was the best fit, with the maximum adsorption capacity achieved at 649.38 mg/g. CW-FACs were also found to be highly stable in concentrated acid, alkaline and salt solutions, as well as for spills of different oil products. Furthermore, the retention rate of the oil adsorption capacity of the CW-FACs after 6 cycles of adsorption-extraction was as high as 93.2%. Therefore, CW-FACs can be widely used, easily recycled, and reused for marine oil spill remediation, which is also a good alternative disposal solution for FACs.
Collapse
Affiliation(s)
- Juan Sun
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China.
| | - Ran Li
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Xiaoyang Wang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Chaocheng Zhao
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Quanwei Song
- State Key Laboratory of Petroleum Pollution Control, Beijing, 102206, China; CNPC Safety and Environmental Protection Technology Research Institute, Beijing, 102206, China
| | - Fang Liu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Zihao Wang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Chunshuang Liu
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| | - Xiuxia Zhang
- College of Chemistry and Chemical Engineering, China University of Petroleum (East China), Qingdao, 266580, China
| |
Collapse
|