Regulation of the Nutrient Cycle Pathway and the Microbial Loop Structure by Different Types of Dissolved Organic Matter Decomposition in Lakes

Photolysis triggers multiple microbial responses: New insights of phosphorus compensation for algal blooms

Photolysis and microbial degradation enabling the rapid mineralization of organic phosphorus constitute the crucial mechanism for phosphorus compensation during algal bloom outbreaks in shallow lakes. This study explored the key pathways of microbial degradation of algae-derived organic phosphorus (ADOP) exacerbated by photolysis through molecular biology techniques. The results showed that photolysis could exacerbate microbial degradation, and the effects on microbial degradation were multifaceted. The photolysis process changes the composition of dissolved organic matter (DOM) in the environment and generates DOM components required for microbial activity, among which the saturated compounds significantly promote the increase of microbial biomass. Differential analysis showed that the photolysis process mainly affected the distribution of bacteria and fungi. The saturated compounds and highly aromatic compounds accompanying the photolysis process stimulated the increase of the abundance of phosphorus-cycling functional bacteria and related functional genes. Simultaneously, photolysis also promoted the growth of extracellular reactive oxygen species (ROS)-producing bacteria, and enhanced biological metabolism by stimulating the significant upregulation and differentiation of multiple enzyme protein subunits in cells. In summary, various changes in microorganisms caused by photolysis enhanced their mineralization of ADOP. These results bring new insights into the mechanism of the persistence of algal blooms.

Long-term trends and rising levels of refractory dissolved organic matter in a suburban plateau lake: Impacts of hydrological changes

Dissolved organic matter (DOM) characteristics and concentrations in lakes are strongly associated with terrestrial input, phytoplankton dynamics, and physicochemical environment. Hydrological conditions can affect multiple aspects of the lake environment, thereby interfering with DOM cycling. This study investigates the long-term trends and drivers of DOM accumulation in Lake Erhai, a subtropical plateau lake in southwestern China, focusing on the role of hydrological processes in driving its accumulation and persistence. By analyzing data from 1992 to 2023-including bulk chemical analysis, 3D-EEM fluorescence spectroscopy, degradation experiments and bayesian structural equation modeling (BSEM), it is concluded that a 174 % increase in water residence time (WRT), from 2.8 years to 7.8 years, driven by reduced inflow and outflow volumes, has promoted the accumulation of refractory DOM (RDOM), raising chemical oxygen demand (CODMn) and presenting substantial challenges challenges to water quality management. Degradation experiments revealed limited biodegradability of DOM (15 % over 28 days) and minimal photodegradation (13.5 % over 72 h), with more than 80 % remaining in a refractory state. Spectroscopic analyses revealed compositional shifts in DOM with prolonged WRT, characterized by decreased humic-like substances and increased protein-like compounds, indicating a progressive transition from allochthonous to autochthonous DOM dominance. BSEM analysis identified a significant temporal shift in DOM drivers: during the initial phase (1992-2010), human activity pressure (HAP) and riverine input quality (RIQ) collectively explained 70 % of the variance, with natural drivers contributing less than 20 %; whereas in the subsequent phase (2010-2023), anthropogenic influences diminished as hydrological and climatic factors became predominant, with hydrological regime (HR) and climatic factors (CF) jointly accounting for 87 % of RDOM variance, reflecting a transition from anthropogenic to climate-hydrological driven accumulation patterns. This research underscores the critical role of hydrological residence time in determining DOM composition, sources, and persistence in plateau lakes following partial decoupling of external pollution sources. The findings highlight the dual influence of climate and hydrology on lakes experiencing significant pressures from reduced water resources and increasing water demand, challenging conventional management strategies focused exclusively on external nutrient control. The case of Lake Erhai demonstrates the necessity for integrated management approaches that address both external and internal DOM dynamics to support sustainable water quality and ecosystem integrity.

Characteristics of nitrogen and phosphorus migration at sediment-water interface in seasonal frozen lakes and the mechanism of microbial driven cycling: a case study of Lake Daihai

Nitrogen and phosphorus play pivotal roles in determining the eutrophic conditions and nutrient provision in lakes. However, the mechanisms and processes of nutrient release at the sediment-water interface of shallow lakes in cold regions remain unclear, especially under the complex environmental conditions of freezing and open-water periods. Therefore, Diffusive Gradients in Thin-films (DGT) and High-resolution Peeper technologies (HR-Peeper) were used to investigate the nitrogen and phosphorus characteristics of the sediment water interface, and the process of bacteria affecting the nitrogen and phosphorus cycle was clarified by the high-throughput sequencing technology. The results indicated that sediment phosphorus (PO43-) flux ranged from -1.39 to 3.6 mg/m2·d, with the interstitial water-Soluble Reactive PO43- presenting notable fluidity and potential bioavailability. The ammonia nitrogen (NH4+-N) flux varied from -4.71 to 3.65 mg/m2·d. The nitrate nitrogen (NO3--N) flux varied from -11.64 to 1.18 mg/m2·d, exhibiting an opposite trend to NH4+-N, which was released into water bodies during the freezing period and migrated to the sediments in the open water period. Common metabolic pathways and functional genes for nitrogen and phosphorus were identified in Methylomicrobium, Marinobacter, and Psychrobacter. The dissimilatory nitrate reduction to ammonium (DNRA) facilitated the transformation of polyphosphates and the release of phosphorus. Water temperature indirectly regulated the fluxes of nitrogen and phosphorus at the sediment-water interface (SWI) by modulating the microbial abundance and dissolved oxygen (DO) content.

Cascading microbial regulation of autochthonous DOM stability in a picocyanobacteria-dominated estuarine reservoir

Estuaries serve as vital interfaces in the global carbon cycle by mediating land-ocean exchange and regulating dissolved organic matter (DOM) dynamics. However, the role of microbial communities in regulating autochthonous DOM under phosphorus-limited estuarine conditions remains insufficiently understood. This study explored the biogeochemical parameters, inorganic carbon dynamics, DOM optical properties, and algal-bacterial community composition in a picocyanobacteria-dominated estuarine reservoir subject to seasonal salinity and nutrient fluctuations. Samples were classified into three groups based on DOM compositional features: pristine autochthonous group (PG), high allochthonous group (HG), and balanced group (BG). In BG, picocyanobacteria, particularly Cyanobium PCC-6307, promoted the accumulation of labile tryptophan-like DOM (component C4), which was associated with the lowest autochthonous DOM stability ratios (AuSR). In HG, terrestrial runoff led to a decline in C4 and an increase in DOM stability, reflecting rapid microbial degradation and partial transformation. In BG, colder temperatures and elevated microbial α-diversity facilitated the conversion of DOM into more humified forms, as indicated by higher proportions of humic-like components and AuSR. Key microbial taxa showed substrate-specific metabolic traits related to amino acid, polysaccharide, and one-carbon compound processing. By integrating DOM-defined groupings, fluorescence-derived stability metrics, and microbial marker analysis, this study reveals a sequential cascade of microbial regulation in DOM production, transformation, and stabilization. These findings offer the first detailed evidence of such processes in a phosphorus-limited estuarine system and provide a new framework for linking DOM properties with microbial ecological functions in dynamic aquatic environments.

Unraveling the interaction of dissolved organic matter and microorganisms with internal phosphorus cycling in the floodplain lake ecosystem

Internal nutrient cycling, especially phosphorus (P), is of great influence in lake eutrophication. Dissolved organic matter (DOM) and microorganisms are ubiquitous in the sediments and closely associated with P-cycling. However, the underlying interactions of DOM, microorganisms and P in floodplain lake area with different hydrological characteristics remain scarce. This study evaluated the P and DOM properties, P functional genes and microbial community ranging from channel to stagnant to grass area (CA, SA, GA) in a floodplain lake, respectively. The results showed that sediments dissolved organic carbon (DOC) and total P (TP) gradually decreased from GA to SA to CA. Organic P (64.44%) and Fe-bound P (34.86%) were primary bioavailable P fractions in three areas. Water Chl-a, DO, DOC and fulvic-like C1 component were essential driving factors affecting the distribution of P in sediments (p < 0.05). Microbial diversity, community structure and P-cycling function were significantly different in three areas and closely associated with sediment P and DOM (p < 0.05). The co-occurrence network analysis revealed that the interconnection of microbial communities, DOM components and P fractions decreased from CA (node: 123, edge: 1399) to SA (node: 122, edge: 667) to GA (node: 119, edge: 521). Sediment microbial communities enhanced P cycling via mineralizing organic P and dissolving inorganic P (Ca-P) in CA and coupling DOM mineralization and Fe-P dissolution in SA, while sediment in GA owned the significant potential of P and DOM storage and the abundant P-cycling genes. This finding provides further understanding that underlying mechanisms of internal P-cycling in floodplain lake ecosystem.

Dissolved organic carbon can alter coastal sediment phosphorus dynamic: Effects of different carbon forms and concentrations

Coastal waters are receiving increasing loads of dissolved organic carbon (DOC), differing in structural complexity and molecular weights with potential different effects on the phosphorus (P) dynamics in these waters. This study conducted an in-situ investigation in Xiangshan Harbor, China, to explore the patterns of P release in response to DOC inputs. To further elucidate the underlying mechanisms behind the DOC-affected sediment P release, a two-month mesocosm experiment was undertaken with coastal sediment (Xiangshan Harbor) to which acetate, glucose, and humic acid (representing the fermentation product, the simple available carbon, and the refractory humic-like carbon sources, respectively) were separately added to the overlying water at dosages of 0, 5, 10, and 20 mg C L-1. We found that: i) sediment P release showed a non-linear increase with DOC input, a pattern likely due to the diverse forms of DOC in coastal zones, which had varying impacts on P release; ⅱ) significant P release for labile DOC (acetate- and glucose-amended) treatments but retention for humic acid treatments, and the magnitude of P changes mainly depended on the amount of DOC addition; ⅲ) acetate and glucose shared similar P-release-promotion mechanisms, i.e., decreased dissolved oxygen, increased ppk genes in water, and increased P bacteria and alkaline phosphatase activity were the dominant factors behind the P release for both carbon sources, as indicated by piecewise structural equation modelling; ⅳ) humic acid-inhibitory effects on sediment P release, which likely reflect increasing "P-humic acid" complexes that favor P adsorption and sedimentation and form stable "humic acid-enzyme" complexes that reduce the catalytic activity of alkaline phosphatase. Our findings provide new understanding of relationships between loading of DOC with different form/concentration and sediment P dynamics in coastal areas.

Effects of perfluoroalkyl acids on nitrogen release, transformation and microbial community during the debris decomposition of Alisma orientale and Iris pseudacorus

The release of nutrients into water during debris decomposition is a serious concern, leading to severe environmental pollution. To understand the effects of extensively present emerging contaminants (such as perfluoroalkyl acids (PFAAs)) on the nitrogen (N) release and transformation, the concentration dynamics of different N species in surrounding water and changes in microbial communities on biofilm during the 70-days decomposition of two typical submerged macrophyte (Alisma orientale and Iris pseudacorus) debris were studied. The results showed that large amounts of N species (especially organic and ammonium N) were released during decomposition. PFAAs with a low concentration (1 μg/L) could stimulate total N (TN) release, whereas PFAAs with a high concentration (≥ 10 μg/L) might have inhibited TN release. Higher intensities of ammonification, nitrosification, and denitrification, but lower intensities of nitrification were observed in water in the presence of PFAAs. Microbiota associated with organic matter hydrolysis, nitrification and denitrification, as well as PFAA degrading/tolerant bacteria, were beneficial and might have occupied dominant states. Redundancy analysis showed that PFAAs were positively associated with the amounts of nitrate, denitrifiers, and azotobacteria but negatively correlated with the TN, ammonia, nitrite, organic N, and nitrosobacteria amounts (p = 0.0002). The complete N metabolism pathway was identified using PICRUSt and KEGG. Functional genes related to ammonification (0.76‰-2.16‰), N reduction (3.43‰-5.05‰), and assimilation (0.81‰-2.16‰) were more abundant than others in all treatments. This study provides a more comprehensive understanding of N cycling during debris decomposition under the increasingly intractable threat of emerging contaminants in aquatic ecosystems.

Exploring the variations in molecular characteristics of dissolved organic matter driven by aquaculture types

In recent decades, global aquaculture has expanded rapidly, raising concerns about coastal environmental degradation due to unregulated or poorly regulated discharge of aquaculture tailwater. Despite the crucial role of dissolved organic matter (DOM) in biogeochemical processes and aquatic biodiversity, the influence of aquaculture type on the molecular characteristics of DOM remains largely unexplored. Herein, this study investigated the variations in chemical and spectroscopic properties as well as molecular characteristics and composition of DOM across different aquaculture types including crustacean, fish and shellfish. Our findings revealed notable differences in DOM quantities among different aquaculture types, with crustacean and fish aquaculture water containing higher DOM amount compared to shellfish aquaculture water. This disparity can be attributed to the more frequent formulated feeds of crustacean and fish in contrast to shellfish aquaculture. Furthermore, distinct differences were also observed in the characteristics and composition of DOM among the different aquaculture waters. Specifically, DOM in shellfish aquaculture water exhibited a higher abundance of unsaturated and reduced molecules as well as increased aromaticity compared to the other two aquaculture waters. Conversely, DOM from fish aquaculture water showed a greater contribution from terrestrial origin characterized by elevated levels of plant-based components such as lignin-like and tannin-like compounds. Interestingly, DOM from shellfish aquaculture water contained lower levels of microbial-derived components such as lipid-like and protein-like compounds, likely due to reduced microorganism populations resulting from lower nutrients availability and higher salinity. Overall, these significant variations in characteristics and composition of DOM underscore the potential impacts of aquaculture type on the DOM biogeochemical cycle and the environmental quality in aquatic ecosystems.

Water temperature and salt ions respectively drive the community assembly of bacterial generalists and specialists in diverse plateau lakes

Plateau lakes (e.g., freshwater and saltwater lakes) are formed through intricate processes and harbor diverse microorganisms that mediate aquatic ecosystem functions. The adaptive mechanisms of lake microbiota to environmental changes and the ecological impacts of such changes on microbial community assembly are still poorly understood in plateau regions. This study investigated the structure and assembly of planktonic bacterial communities in 24 lakes across the Qinghai-Tibetan and Inner Mongolia Plateaus, with particular focus on habitat generalists, opportunists, and specialists. High-throughput sequencing of the 16S ribosomal RNA genes revealed that bacterial generalists had a lower species number (2196) but higher alpha diversity than the specialist and opportunist counterparts. Taxonomic dissimilarity and phylogenetic diversity analyses unraveled less pronounced difference in the community composition of bacterial generalists compared to the specialist and opportunist counterparts. Geographical scale (14.4 %) and water quality (12.6 %) emerged as major ecological variables structuring bacterial communities. Selection by water temperature and related variables, including mean annual temperature, elevation, longitude, and latitude, mainly shaped the assembly of bacterial generalists. Ecological drift coupled with selection by salt ions and related variables, including total phosphorus, chlorophyll a, and salinity, predominantly drove the assembly of bacterial specialists and opportunists. This study uncovers distinct bacterial responses to interacting ecological variables in diverse plateau lakes and the ecological processes structuring bacterial communities across various lake habitats under anthropogenic disturbance or climate change.

Spatial distribution of sediment dissolved organic matter in oligotrophic lakes and its binding characteristics with Pb(II) and Cu(II)

Dissolved organic matter (DOM), the most active component in interstitial waters, determines the stability of heavy metals and secondary release in sediments. However, little is known about the composition and metal-binding patterns of DOM in interstitial water from oligotrophic lakes affected by different anthropogenic perturbations. Here, 18 interstitial water samples were prepared from sediments in agricultural, residential, tourist, and forest regions in an oligotrophic lake (Shengzhong Lake in Sichuan Province, China) watershed. Interstitial water quality and DOM composition, properties, and Cu(II)- and Pb(II)-binding characteristics were measured via physicochemical analysis, UV-vis spectroscopic, fluorescence excitation-emission matrix-parallel factor analysis (EEM-PARAFAC), and fluorescence titration methods. The DOM, which was produced mainly by microbial activities, had low molecular weights, humification degrees, and aromaticity. Based on EEM-PARAFAC results, the DOM was generally composed of tryptophan- (57.7%), terrestrial humic- (18.7%), microbial humic- (15.6%), and tyrosine-like (8.0%) substances. The DOM in the metal complexes was primarily composed of tryptophan-like substances, which accounted for ~42.6% of the DOM-Cu(II) complexes and ~72.0% of the DOM-Pb(II) complexes; however, microbial humic-like substances primarily contributed to the stability of DOM-Cu(II) (logKCu = 3.7-4.6) and DOM-Pb(II) (logKPb = 4.3-4.8). Water quality parameters did not significantly affect the stability of DOM-metal complexes. We demonstrated that the metal-binding patterns of DOM in interstitial water from oligotrophic lakes are highly dependent on microbial DOM composition and are affected by anthropogenic perturbations to a lesser extent.

Differential Adsorption of Dissolved Organic Matter and Phosphorus on Clay Mineral in Water-Sediment System

Lake sediments connection to the biogeochemical cycling of phosphorus (P) and carbon (C) influences streamwater quality. However, it is unclear whether and how the type of sediment controls P and C cycling in water. Here, the adsorption behavior of montmorillonite (Mt) with different interlayer cations (Na+, Ca2+, or Fe3+) on dissolved organic matter (DOM) and P was investigated to understand the role of Mt in regulating the organic carbon-to-phosphate (OC/P) ratio within freshwater systems. The adsorption capacity of Fe-Mt for P was 3.2-fold higher than that of Ca-Mt, while it was 1/3 lower for DOM. This dissimilarity in adsorption led to an increased OC/P in Fe-Mt-dominated water and a decreased OC/P in Ca-Mt-dominated water. Moreover, an in situ atomic force microscope and high-resolution mass spectrometry revealed molecular fractionation mechanisms and adsorptive processes. It was observed that DOM inhibited the nucleation and crystallization processes of P on the Mt surface, and P affected the binding energy of DOM on Mt through competitive adsorption, thereby governing the interfacial P/DOM dynamics on Mt substrates at a molecular level. These findings have important implications for water quality management, by highlighting the role of clay minerals as nutrient sinks and providing new strategies for controlling P and C dynamics in freshwater systems.

Instability in a carbon pool driven by multiple dissolved organic matter sources in a eutrophic lake basin: Potential factors for increased greenhouse gas emissions

Lakes serve as vital reservoirs of dissolved organic matter (DOM) and play pivotal roles in biogeochemical carbon cycles. However, the sources and compositions of DOM in freshwater lakes and their potential effects on lake sediment carbon pools remain unclear. In this study, seven inflowing rivers in the Lake Taihu basin were selected to explore the potential effects of multi-source DOM inputs on the stability of the lake sediment carbon pool. The results showed the high concentrations of dissolved organic carbon in the Lake Taihu basin, accompanied by a high complexity level. Lignins constituted the majority of DOM compounds, surpassing 40% of the total, while the organic carbon content was predominantly composed of humic acids (1.02-3.01 g kg-1). The high amounts of lignin oxidative cleavage led to CHO being the main molecular structure in the DOM of the seven rivers. The carbon constituents within the sediment carbon reservoir exhibited a positive correlation with dissolved CH4 and CO2, with a notable emphasis on humic acid and dissolved CH4 (R2 = 0.86). The elevated concentration of DOM, coupled with its intricate composition, contributed to the increases in dissolved greenhouse gases (GHGs). Experiments showed that the mixing of multi-source DOM can accelerate the organic carbon mineralization processes. The unit carbon emission efficiency was highest in the mixed group, reaching reached 160.9 μmol∙Cg-1, which also exhibited a significantly different carbon pool. The mixed decomposition of DOM from different sources influenced the roles of the lake carbon pool as source and sink, indicating that the multi-source DOM of this lake basin was a potential driving factor for increased carbon emissions. These findings have improved our understanding of the sources and compositions of DOM in lake basins and revealed their impacts on carbon emissions, thereby providing a theoretical basis for improving assessments of lake carbon emissions.

Microbial interaction patterns and nitrogen cycling regularities in lake sediments under different trophic conditions

Exploring how nitrogen (N) cycling microbes interact in eutrophic lake sediments and how biogenic elements influence the nitrogen cycle is crucial for understanding biogeochemical cycles and nitrogen accumulation mechanisms. In this study, sediment samples were collected from various areas of Taihu Lake with different trophic conditions in all four seasons from 2015 to 2017. Using high-throughput sequencing and molecular ecological network analysis, we investigated the microbial interaction patterns and the role of nitrogen cycling in sediments from lakes with different trophic conditions. The results showed distinct structures of sediment microbial networks between lake areas with different trophic conditions. In the more eutrophic region, network indices indicate higher transfer efficiency of energy, material, and information, more significant competition, and weaker niche differentiation of the microbial community. The sedimentary environment in the moderately eutrophic area exhibited greater potential for denitrification, nitrification, and anammox compared to the mesotrophic area, but the inhibition between N functional microbes and limitations in N removal processes were also more likely to occur. The topological structure of the networks showed that the carbon (C), sulfur (S), and iron (Fe) cycles had a strong influence on the nitrogen cycle in both lake areas. In the moderately eutrophic lake area, C- and S-cycling functional bacteria facilitated a closed cycle of the coupled N fixation-nitrification-DNRA (dissimilatory nitrate reduction to ammonium) process and reduced N removal. In the mesotrophic lake area, C- and S-cycling functional bacteria promoted both N fixation and mineralization, and Fe-cycling functional bacteria coupled with denitrifiers enhanced the nitrogen removal process of products from nitrogen fixation and mineralization. This study improved the understanding of the nitrogen cycling mechanism in lake sediments under different trophic conditions.

Applying fluorescence spectroscopy and DNA pyrosequencing with 2D-COS and co-occurrence network to deconstruct dynamical DOM degradation of air-land-water sources in an urban river

In an urban river, comprehending the interplay between dissolved organic matter (DOM) and atmospheric, terrestrial, and aquatic sources is crucial. This encompassed investigating temporal variations in DOM and its association with the bacterioplankton community to gain profound insights into the biogeochemical dynamics and biodegradability of DOM. DOM was extracted from PM2.5, soil, sediment, bait, and terrestrial/aquatic plant residuals collected along the Wenyuhe River in Beijing, China - a region predominantly supplied with reclaimed water. Subsequently, mixed microbial communities from the river were introduced into DOM samples originating from each source and incubated for 10 days. Principal component analysis (PCA) applied to reassembled excitation-emission matrix (EEM) data revealed two distinct clusters: cluster 1 comprising soil, sediment, and PM2.5 samples; and cluster 2 consisting of bait as well as terrestrial/aquatic plant residuals. According to parallel factor analysis, C1 (microbial humic-like) and C2-C3 (fulvic-like) dominated the DOM from soil, sediment, and PM2.5. These components were continuously degraded during incubation, except for PM2.5. DOM from bait and terrestrial/aquatic plants contained representative components of C6 (phenolic-like) and C7 (tryptophan-like), which underwent extensive decomposition. Interestingly, DOM in PM2.5 contained aliphatic compounds and polycyclic aromatic hydrocarbons (PAHs) but exhibited weak degradation with the complete disappearance of C6 and C7. Rhodococcus was a unique species capable of degrading PAHs, which might be particularly important considering the specificity of PM2.5 pollution. Based on two-dimensional correlation spectroscopy (2D-COS), variations in DOM components such as C6, and C7 were significantly larger compared to those of C1, C2, C3, and C5 (terrestrial humic-like) from bait samples, sediments, and residual terrestrial plants. MW-2D-COS analysis revealed that DOM from bait samples and terrestrial/aquatic plants experienced substantial degradation by the second day while DOM from soil or sediment decomposed mainly on the fourth day. Notably, the decomposition of DOM fractions in PM2.5 occurred throughout the entire four-day period. Co-occurrence network analysis classified sources of DOM into two clusters similar to PCA results: cluster 1 showed significant microbial degradation of fulvic-like compounds while cluster 2 demonstrated deep microbial decomposition of tyrosine-like and phenolic compounds. Therefore, the artificial loading of DOM into rivers not only expands the chemical diversity within DOM but also perturbs bacterioplankton diversities.