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Zhou S, Li Y, Yang S, Lin L, Deng T, Gan C, An W, Xu M. The role of electroactive biofilms in enhanced para-chlorophenol transformation collaborated with biosynthetic palladium nanoparticles. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2025; 375:126312. [PMID: 40288628 DOI: 10.1016/j.envpol.2025.126312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 04/21/2025] [Accepted: 04/24/2025] [Indexed: 04/29/2025]
Abstract
Bioremediation is a cost-effective strategy for decomposition of chlorinated organic contaminants, but its application is often hindered by the generation of toxic chlorinated byproducts. Though the design of functional biofilms, incorporating microbially-inspired catalytic materials, has emerged as a promising solution for tackling the byproducts issues, the microbial mechanisms driving these processes remain inadequately understood. This study demonstrates a hybrid electroactive biofilm (EAB)-palladium nanoparticles (Pd NPs) system that effectively separates the dechlorination and mineralization of para-chlorophenol (4-CP), and most importantly, it provides new insights into the microbial and genetic roles of EABs in this process. Under an applied potential of -0.6 V, Pd NPs via palladate reduction were biogenically synthesized and deposited on the cytomembranes within the biofilm, achieving an 82 % decrease in 4-CP concentration within 48 h. The ultra-performance liquid chromatogram and mass spectrum confirmed that 4-CP was initially dechlorinated to phenol by the biogenic Pd NPs before undergoing further degradation by the biofilm, effectively preventing toxic chlorinated byproducts. The Dechloromonas, Pseudomonas, and Geobacter were identified as predominant genera in the system and the metagenomics analysis noted increased relative abundance of ring-cleavage genes like pcaG, dmpB/xylE, and catA. Importantly, the abundance of dmpB/xylE was primarily associated with Dechloromonas and Pseudomonas, further highlighted that the dmpB/xylE-pathway was important for rapid 4-CP decomposition in the system. This study advances the understanding of EAB-Pd NPs synergy, showcasing an innovative and sustainable approach for the efficient removal of halogenated pollutants.
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Affiliation(s)
- Shaofeng Zhou
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Yanjing Li
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Shan Yang
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Lizhou Lin
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Tongchu Deng
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Cuifen Gan
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Wenwen An
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China
| | - Meiying Xu
- Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, China.
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Wang J, Li X, Jin H, Cui Y, Jiang L, Huang S, Shi K, Yan J. Enhanced resilience to oxygen exposure and toxicity of chlorinated solvents in immobilized Dehalococcoides mccartyi. JOURNAL OF HAZARDOUS MATERIALS 2025; 490:137769. [PMID: 40022933 DOI: 10.1016/j.jhazmat.2025.137769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2025] [Revised: 02/25/2025] [Accepted: 02/25/2025] [Indexed: 03/04/2025]
Abstract
Members of Dehalococcoides mccartyi (Dhc) are strictly anaerobic and play crucial roles in the restoration of many industrial sites impacted by chlorinated solvents, such as tetrachloroethene (PCE) and trichloroethene (TCE). In situ bioremediation with Dhc involves intricate procedures intended to minimize oxygen intrusion, and achieving optimal dechlorination performance in aquifers near the dense non-aqueous phase liquids source zone is challenging. Here, we respectively embedded Dhc strain 195 and the biomass of a Dhc-containing, PCE-dechlorinating consortium in poly(vinyl alcohol)-alginate hydrogel beads. The ethene-forming potential was well-retained in immobilized Dhc following a prolonged oxygen exposure spanning from 12 hours to 7 days, with dechlorination rates ranging from 54.6 ± 4.2-101.9 ± 13.5 µM Cl- released day-1. In contrast, suspended strain 195 and the Dhc-containing biomass exposed to oxygen for a shorter duration were completely deactivated, or suffered a substantial reduction in dechlorination potential. Cell immobilization also significantly improved the ability of Dhc to tolerate the toxic effects of chlorinated solvents. When exposed to 300 mg L-1 TCE or free-phase PCE, an immobilized Dhc inoculum enabled more rapid recovery of dechlorination activity with shorter lag phases and up to 2.1-fold higher dechlorination rate compared to the use of their suspended counterparts. Our results demonstrate the effectiveness of cell immobilization for shielding Dhc from various environmental stresses (e.g., oxygen exposure).
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Affiliation(s)
- Jingjing Wang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China; Key Laboratory of Eco-restoration of Regional Contaminated Environment, Ministry of Education, Shenyang University, Shenyang, Liaoning 110044, China
| | - Xiuying Li
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China
| | - Huijuan Jin
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China
| | - Yiru Cui
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China
| | - Lisi Jiang
- College of Life Science, Shenyang Normal University, Shenyang, Liaoning 110034, China
| | - Siqi Huang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ke Shi
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Yan
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China.
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Kao CM, Chen KF, Kuo PS, Chien CC, Lu CW, Chen SC. Mechanistic insights into chloroethene dechlorination by Dehalococcoides mccartyi strain CWV2: A multi-omics perspective. WATER RESEARCH 2025; 277:123347. [PMID: 40020353 DOI: 10.1016/j.watres.2025.123347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 02/12/2025] [Accepted: 02/20/2025] [Indexed: 03/03/2025]
Abstract
This study provides an in-depth investigation of the novel Dehalococcoides mccartyi (Dhc) strain CWV2, isolated from Taiwan, for its effectiveness in dechlorinating various chloroethenes, including PCE, TCE, DCEs, and VC, to ethene. Through multi-omics analyses, including genomic, transcriptomic, translatomic and proteomic profiling, we uncovered the mechanisms behind TCE dechlorination by strain CWV2. The genomic analysis identified key reductive dehalogenase (RDase) genes, pceA and vcrA, which enhance our understanding of the versatile dechlorination pathways in Dhc. Ribosome profiling provided detailed insights into the translational regulation of vcrA, revealing sophisticated genetic control over protein synthesis. Complementary BN-PAGE and proteomic analyses identified key RDase VcrA, offering further insights into the activity of the organohalide respiration (OHR) complex within CWV2 and its metabolic pathways. Multi-omics analyses provide a comprehensive understanding of the mechanisms behind TCE dechlorination and organohalide respiration, offering valuable insights to advance bioremediation strategies for chloroethene-contaminated environments.
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Affiliation(s)
- Chih-Ming Kao
- Institute of Environmental Engineering, National Sun Yat-Sen University, Kaohsiung, 80424, Taiwan
| | - Ku-Fan Chen
- Department of Civil Engineering, National Chi Nan University, Puli, Nantou, 545301, Taiwan
| | - Po-Sheng Kuo
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan
| | - Chih-Ching Chien
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Chung-Li City, Taoyuan, 32000, Taiwan
| | - Che-Wei Lu
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan; Research and Development Department, Overchlorine Corporation, Taoyuan, 32001, Taiwan.
| | - Ssu-Ching Chen
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan.
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Chen X, Li Z, Zhang Z, Nan J, Zhao G, Ho SH, Liang B, Wang A. How Pseudomonas conducts reductive dechlorination of 2,4,6-trichlorophenol: Insights into metabolic performance and organohalide respiration process. WATER RESEARCH 2025; 273:123014. [PMID: 39719803 DOI: 10.1016/j.watres.2024.123014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 12/16/2024] [Accepted: 12/18/2024] [Indexed: 12/26/2024]
Abstract
Organohalide-respiring bacteria (OHRB) play a key role in facilitating the detoxification of halogenated organics, but their slow growth and harsh growth conditions often limit their application in field remediation. In this study, we investigated the metabolic performance and organohalide respiration process of a non-obligate OHRB, Pseudomonas sp. CP-1, demonstrating favorable anaerobic reductive dechlorination ability of 2,4,6-trichlorophenol to 4-chlorophenol with a removal rate constant (k) of 0.46 d-1. Due to its facultative anaerobic nature, strain CP-1 exhibited unique metabolic properties. In aerobic conditions, strain CP-1 preferentially utilized oxygen for rapid proliferation, and anaerobic reductive dechlorination was initiated once the oxygen was depleted. The aerobic proliferation facilitated the subsequent reductive dechlorination process. Through multi-tool analysis, a modified tricarboxylic acid cycle was proposed to be linked to organohalide respiration when acetate served as the sole carbon source. A predictive model for the electron transport chain (ETC) for reductive dechlorination was constructed, with complex Ⅰ, complex Ⅱ, ubiquinone, complex Fix (flavoprotein), and reductive dehalogenase (RDase) as the major components. A specific RDase facilitating reductive dechlorination was identified. It shared a 64.35 % amino acid similarity with biochemically characterized RDases and was designated CprA-2. Its ortho-dechlorination catalytic process was proposed through molecular docking. The discovery of highly adaptable Pseudomonas with favorable dechlorination activity and the elucidation of its metabolic properties provide valuable insights into the understanding of non-obligate OHRBs and their application regulation.
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Affiliation(s)
- Xueqi Chen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Zhiling Li
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China.
| | - Zimeng Zhang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Jun Nan
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Guanshu Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China
| | - Bin Liang
- State Key Laboratory of Urban Water Resource and Environment, School of Civil and Environmental Engineering, Harbin Institute of Technology Shenzhen, Shenzhen, 518055, PR China
| | - Aijie Wang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, PR China; State Key Laboratory of Urban Water Resource and Environment, School of Civil and Environmental Engineering, Harbin Institute of Technology Shenzhen, Shenzhen, 518055, PR China.
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Yang K, Zhang L, Ruiz-Valencia A, Song X, Vogel TM, Zhang X. Heterogeneity in the Composition and Catabolism of Indigenous Microbiomes in Subsurface Soils Cocontaminated with BTEX and Chlorinated Aliphatic Hydrocarbons. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025; 59:4540-4550. [PMID: 39993154 DOI: 10.1021/acs.est.4c10071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
Abstract
The effectiveness of in situ bioremediation can be affected by an insufficient understanding of high site/soil heterogeneity, especially in cocontaminated soils and sediments. In this study, samples from multiple locations within a relatively small area (20 × 20 m2) contaminated with benzene, toluene, ethylbenzene, and xylene (BTEX) and chlorinated aliphatic hydrocarbons (CAHs) were compared to examine their physicochemical and microbial properties. Unsupervised clustering analysis of 16S rRNA gene amplicon and metagenome shotgun sequencing data indicates that the indigenous community differentiated into three distinct patterns. In Cluster 1, Pseudomonas, with multiple monooxygenases and glutathione S-transferase (GST), was enriched in samples contaminated with high concentrations of BTEX and CAHs. Cluster 2 contained a high fraction of cometabolic degraders. Cluster 3 was dominated by Ralstonia and organohalide-respiring bacteria (OHRBs) mediating the reductive dechlorination of CAHs. Significant differences in composition and function among microbiomes were attributed to the differential distribution of organic pollutants, even in such a small area. Incorporating genomic features with physicochemical data can significantly enhance the understanding of the heterogeneities in soil and their impacts on microbial communities, thereby providing valuable information for the optimization of bioremediation strategies.
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Affiliation(s)
- Kaiwen Yang
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Lei Zhang
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Azariel Ruiz-Valencia
- Laboratoire d'Ecologie Microbienne, UMR CNRS 5557, UMR INRAE 418, VetAgro Sup, Universite Claude Bernard Lyon 1, Villeurbanne 69622, France
| | - Xin Song
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 211135, China
| | - Timothy M Vogel
- Laboratoire d'Ecologie Microbienne, UMR CNRS 5557, UMR INRAE 418, VetAgro Sup, Universite Claude Bernard Lyon 1, Villeurbanne 69622, France
| | - Xiaojun Zhang
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
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Adrian L, Sawers RG, Deobald D. Organohalide respiration in Dehalococcoides strains represents a novel mode of proton motive force generation. Adv Microb Physiol 2025; 86:141-173. [PMID: 40404268 DOI: 10.1016/bs.ampbs.2024.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2025]
Abstract
Dehalococcoides strains grow obligately by respiration with hydrogen as an electron donor and halogenated compounds as terminal electron acceptors, catalysed by a single membrane-integrated protein supercomplex. Many insights have been gained into the respiratory complex based on physiological experiments, biochemical analyses, genome sequencing, and proteomics. Recent data acquired from activity tests with deuterated water and whole cells revealed the mode of energy conservation by this respiratory complex. The data shows that the proton required for periplasmic dehalogenation originates from inside the cell, suggesting an electrogenic protonation of the electron acceptor, while two protons are released into the periplasm by hydrogen oxidation. This surprisingly simple mechanism of pmf generation aligns with the subunit composition of the respiratory complex, the orientation of the subunits in the membrane, the absence of quinones as electron mediators, the rigidity of the cell membrane, as evidenced by its phospholipid fatty acid composition, and with proton channels formed by protonatable amino acid residues identified in the AlphaFold2-predicted structure of one of the membrane-spanning subunits. The respiration model is characterised by: (i) electrogenic protonation of the electron acceptor; (ii) reliance on a single protein complex for pmf generation without quinones; (iii) lack of transmembrane cytochromes; (iv) presence of both redox-active centres on the same side of the membrane, both facing the periplasm; and (v) restriction of the electron flow to periplasmic subunits of the respiratory complex. This type of respiration may represent an ancestral, quinone-free mechanism, offering inspiring new biotechnological applications.
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Affiliation(s)
- Lorenz Adrian
- Helmholtz Centre for Environmental Research - UFZ, Department Molecular Environmental Biotechnology, Leipzig, Germany; Chair of Geobiotechnology, Technische Universität Berlin, Berlin, Germany.
| | - R Gary Sawers
- Institute for Biology/Microbiology, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Darja Deobald
- Helmholtz Centre for Environmental Research - UFZ, Department Molecular Environmental Biotechnology, Leipzig, Germany
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Liao H, Wang X, Wang X, Zhang M, Zhang Y, Huang S, Wang H, Jin H, Wang J, Li X, Yan J, Schubert T, Löffler FE, Yang Y. Organohalide respiration: retrospective and perspective through bibliometrics. Front Microbiol 2024; 15:1490849. [PMID: 39777152 PMCID: PMC11703978 DOI: 10.3389/fmicb.2024.1490849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Accepted: 11/27/2024] [Indexed: 01/11/2025] Open
Abstract
Organohalide-respiring bacteria (OHRB) play a pivotal role in the transformation of organohalogens in diverse environments. This bibliometric analysis provides a timely overview of OHRB research trends and identifies knowledge gaps. Publication numbers have steadily increased since the process was discovered in 1982, with fluctuations in total citations and average citations per publication. The past decade witnessed a peak in publications, underscoring heightened research activity and extensive collaboration. Thematic analysis identified two primary research foci: mechanistic exploration of OHRB and their interplay with environmental factors. Future research should prioritize elucidating the roles OHRB's play in biogeochemical cycling, utilizing synthetic biology tools for enhanced biotransformation, deciphering OHRB's ecological interactions, unraveling their evolutionary pathways, and investigating dehalogenation capabilities in other microorganisms, including archaea. These research directions promise to advance our understanding of microbially-driven organohalide transformations, microbial ecology, and genetic engineering potential, ultimately informing natural organohalide cycling and environmental management strategies.
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Affiliation(s)
- Hengyi Liao
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xuhao Wang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xin Wang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Manman Zhang
- Shenyang Pharmaceutical University, Shenyang, Liaoning, China
| | - Yiji Zhang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Siqi Huang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hongyan Wang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Huijuan Jin
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
| | - Jingjing Wang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
| | - Xiuying Li
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
| | - Jun Yan
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
| | - Torsten Schubert
- Viral Ecology and Omics, Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Frank E. Löffler
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, Knoxville, TN, United States
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Knoxville, TN, United States
- Department of Microbiology, University of Tennessee, Knoxville, Knoxville, TN, United States
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, Knoxville, TN, United States
| | - Yi Yang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
- CAS Key Laboratory of Forest Ecology and Silviculture, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China
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Klaes S, Madan S, Deobald D, Cooper M, Adrian L. Revealing taxonomy, activity, and substrate assimilation in mixed bacterial communities by GroEL-proteotyping-based stable isotope probing. iScience 2024; 27:111249. [PMID: 39759010 PMCID: PMC11700628 DOI: 10.1016/j.isci.2024.111249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Revised: 08/26/2024] [Accepted: 10/22/2024] [Indexed: 01/07/2025] Open
Abstract
Protein-based stable isotope probing (protein-SIP) can link microbial taxa to substrate assimilation. Traditionally, protein-SIP requires a sample-specific metagenome-derived database for samples with unknown composition. Here, we describe GroEL-prototyping-based stable isotope probing (GroEL-SIP), that uses GroEL as a taxonomic marker protein to identify bacterial taxa (GroEL-proteotyping) coupled to SIP directly linking identified taxa to substrate consumption. GroEL-SIP's main advantages are that (1) it can be performed with a sample-independent database and (2) sample complexity can be reduced by enriching GroEL proteins, increasing sensitivity and reducing instrument time. We applied GroEL-SIP to pure cultures, synthetic bicultures, and a human gut model using 2H-, 18O-, and 13C-labeled substrates. While 2H and 18O allowed assessing general activity, 13C enabled differentiation of substrate source and utilized metabolic pathways. GroEL-SIP offers fast and straightforward protein-SIP analyses of highly abundant families in mixed bacterial communities, but further work is needed to improve sensitivity, resolution, and database coverage.
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Affiliation(s)
- Simon Klaes
- Department of Molecular Environmental Biotechnology, Helmholtz-Centre for Environmental Research – UFZ, 04318 Leipzig, Saxony, Germany
- Chair of Geobiotechnology, Technische Universität Berlin, 13355 Berlin, Berlin, Germany
| | - Shobhit Madan
- Department of Molecular Environmental Biotechnology, Helmholtz-Centre for Environmental Research – UFZ, 04318 Leipzig, Saxony, Germany
- Faculty of Engineering, Ansbach University of Applied Sciences, 91522 Ansbach, Bavaria, Germany
| | - Darja Deobald
- Department of Molecular Environmental Biotechnology, Helmholtz-Centre for Environmental Research – UFZ, 04318 Leipzig, Saxony, Germany
| | - Myriel Cooper
- Chair of Environmental Microbiology, Technische Universität Berlin, 10587 Berlin, Berlin, Germany
- Agroecologie Department, Institut Agro Dijon, INRAE, University Bourgogne Franche-Comte, Bourgogne Franche-Comte, 21000 Dijon, France
| | - Lorenz Adrian
- Department of Molecular Environmental Biotechnology, Helmholtz-Centre for Environmental Research – UFZ, 04318 Leipzig, Saxony, Germany
- Chair of Geobiotechnology, Technische Universität Berlin, 13355 Berlin, Berlin, Germany
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Wang Z, Yu Y, Zhao R, Li A. Construction of a synthetic anaerobic dechlorination microbiome to degrade chlorinated ethenes by application of metabolic interactions principle. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 955:176981. [PMID: 39427906 DOI: 10.1016/j.scitotenv.2024.176981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 10/05/2024] [Accepted: 10/14/2024] [Indexed: 10/22/2024]
Abstract
Bioaugmentation is a bioremediation approach to treat groundwater contaminated with chlorinated ethenes, but currently it faces challenges such as poor microbiome stability and effectiveness, due to blind species integration and metabolic inhibition. The objective of this study was to create a controllable and functionally stable microbial community for dichlorination application. For this, we utilized targeted screening to identify dechlorinating bacteria from contaminated groundwater, that in combination would form an anaerobic dechlorination microbial community with stabilizing metabolic interactions between the constituents. The results showed that two organohalide-respiring bacterial (OHRB) species were isolated, and these were identified as Enterobacter bugandensis X4 and Enterobacter sichuanensis C4. Upon co-cultivation with lactic acid as the carbon source, the strains demonstrated metabolic interactions and synergistic dehalogenation ability towards trichloroethene (TCE). It was further demonstrated that the functional microbiome constructed with the strains was stable over time and exhibited a robust TCE degradation rate of 80.85% at 13.13 mg/L TCE within 10 days. Additionally, the complete conversion of TCE was achieved through microbiome bioaugmentation, this augmented microbiome increased the degradation rate towards 52.55 mg/L TCE by approximately 30% within 6 days. Additionally, bioaugmentation stimulated the growth of indigenous OHRB, such as Dehalobacter and Desulfovibrio. It also promoted a positive succession of the microbial community. These findings offer valuable insights into the microbial remediation of chlorinated ethenes-contaminated groundwater and offers novel ideas for the construction of an artificial functional microbiome.
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Affiliation(s)
- Zeyi Wang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, People's Republic of China
| | - Yang Yu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, People's Republic of China
| | - Rongjian Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, People's Republic of China
| | - Ang Li
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, People's Republic of China.
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Li ZT, Zhao HP. Sulfate-driven microbial collaboration for synergistic remediation of chloroethene-heavy metal pollution. WATER RESEARCH 2024; 268:122738. [PMID: 39504699 DOI: 10.1016/j.watres.2024.122738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 10/16/2024] [Accepted: 11/01/2024] [Indexed: 11/08/2024]
Abstract
The treatment of heavy metal(loid) (HM) composite pollution has long posed a challenge for the bioremediation of organohalide-contaminated sites. Given the prevalent cohabitation of sulfate-reducing bacteria (SRB) with organohalide-respiring bacteria (OHRB), we proposed a sulfate-amendment strategy to achieve synergistic remediation of trichloroethene and diverse HMs [50μM of As(III), Ni(II), Cu(II), Pb(II)]. Correspondingly, 50-75 μM sulfate was introduced to HM inhibitory batches to investigate the enhancement effect of sulfate amendment on bio-dechlorination. Dechlorination kinetics and MATLAB modeling indicated that sulfate amendment comprehensively improved the reductive dechlorination performance in the presence of As(III), Ni(II), Pb(II) and mixed HMs, while no enhancement was observed under Cu(II) exposure. Additionally, sulfate introduction effectively accelerated the detoxification of Ni(II), Pb(II), Cu(II), and As(III), achieving removal efficiencies of 76.87 %, 64.01 %, 86.37 %, and 95.50 % within the first three days, respectively. Meanwhile, propionate dynamics and acetogenesis indicated enhanced carbon source and e-donor supply. 16S rRNA gene sequencing and metagenomic analysis results demonstrated that HM sequestration was accomplished jointly by SRB and HM-resistant bacteria via extracellular precipitation (metal sulfide) and intracellular sequestration, while their contribution depended on the specific coexisting HM species present. This study highlights the critical role of sulfate in the concurrent bioremediation of HM-organohalide composite contamination and provides insights for developing a cost-effective in-situ bioremediation strategy.
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Affiliation(s)
- Zheng-Tao Li
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310030, PR China
| | - He-Ping Zhao
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310030, PR China.
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11
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Li D, Guo W, Chen B, Zhai Y, Lang Y, Guo T, Cao X, Zhao L. Niche construction in a bioelectrochemical system with 3D-electrodes for efficient and thorough biodechlorination. WATER RESEARCH 2024; 265:122260. [PMID: 39167969 DOI: 10.1016/j.watres.2024.122260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Revised: 08/04/2024] [Accepted: 08/12/2024] [Indexed: 08/23/2024]
Abstract
The design of bioelectrochemical system based on the principle of niche construction, offers a prospective pathway for achieving efficient and thorough biodechlorination in groundwater. This study designed a single-chamber microbial electrolysis cell, with porous three-dimensional (3D) electrodes introduced, to accelerate the niche construction process of functional communities. This approach allowed the growth of various bacteria capable of simultaneously degrading 2,4-dichlorophenol (DCP) and its refractory intermediates, 4-chlorophenol (4CP). The 3D-electrodes provided abundant attachment sites for diverse microbes with a high initial Shannon index (3.4), and along the degradation progress, functional bacteria (Hydrogenoanaerobacterium and Rhodococcus erythropolis for DCP-degrading, Sphingobacterium hotanense for 4CP-degrading and Delftia tsuruhatensis for phenol-degrading) constructed their niches. Applying an external voltage (0.6 V) further increased the selective pressure and niche construction pace, as well as provided 'micro-oxidation' site on the electrode surface, thereby achieving the degradation of 4CP and mineralization of phenol. The porous electrodes could also adsorb contaminants and narrow their interaction distance with microbes, which benefited the degradation efficiency. Thus a 10-fold increase in the overall mineralization of DCP was achieved. This study constructed a novel bioelectrochemical system for achieving efficient and thorough biodechlorination, which was suitable for in situ bioremediation of groundwater.
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Affiliation(s)
- Deping Li
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Wenbo Guo
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Bo Chen
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ying Zhai
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yi Lang
- The Fourth Engineering Co., LTD. of China Railway No 4 Group, Hefei Anhui 230000, China
| | - Tianbao Guo
- Zhou Enlai School of Government Management, Nankai University, Tianjin 300071, China
| | - Xinde Cao
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ling Zhao
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.
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12
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Liu M, Su X, Yuan J, Yang X, Chen Y, Xu Q, Huang X, Xu J, He Y. Unravelling the processes involved in biodegradation of chlorinated organic pollutant: From microbial community to isolated organohalide degraders. WATER RESEARCH 2024; 268:122730. [PMID: 39504695 DOI: 10.1016/j.watres.2024.122730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 09/30/2024] [Accepted: 10/30/2024] [Indexed: 11/08/2024]
Abstract
Hundreds of studies have demonstrated the bioremediation of chlorinated organic pollutants (COPs) in flooded environments. However, the role of specific functional strains in degrading COPs under complex media such as wetlands is still unclear. Here, we focused on the microbial characteristics of COP-polluted sediments, identified the bacteria responsible for degradation and conducted a genomic analysis of these bacteria. Four strains were obtained and identified as Petrimonas sulfuriphila PET, Robertmurraya sp. CYTO, Hungatella sp. CloS1 and Enterococcus avium PseS3, respectively. They were capable of degrading a typical COP, γ-hexachlorocyclohexane (γ-HCH). The residual γ-HCH concentrations were 58.8 % (PET), 45.6 % (CYTO), 60.2 % (CloS1), and 69.3 % (PseS3) of its initial value, respectively. Strain PET, CYTO and CloS1 could degrade γ-HCH to its dehalogenation product chlorobenzene. Each strain harbors genes annotated to the pathway of halogenated organic matter degradation (e.g. 2-haloacid dehalogenase) and cobalamin biosynthesis, which are involved in the degradation of COPs. Comparative genomic analysis of the four strains and other classical organohalide-respiring bacteria (e.g. Dehalococcoides mccartyi and Sulfurospirillum multivorans DSM 12446) showed that they share orthologous clusters related to the cobalamin biosynthetic process (GO:0009236). VB12 was also detected in the culture systems of the four strains, further highlighting the importance of cobalamin in COPs degradation. In the genome of the four strains, some genes were annotated to the halogenated organic matter degradation and cobalamin biosynthesis pathway within horizontal gene transfer (HGT) regions. This further indicated that microorganisms carrying these genes can adapt faster to pollution stress through HGT. Together, these findings revealed the co-evolution mechanism of functional strains and may provide novel insights into improved bioremediation strategies for COP-polluted complex media based on generalist organochlorine-degrading bacteria.
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Affiliation(s)
- Meng Liu
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xin Su
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jing Yuan
- Microbiome Network and Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Xueling Yang
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuxuan Chen
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Qianru Xu
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiaowei Huang
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jianming Xu
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yan He
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Hangzhou 310058, China.
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13
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Huang W, Cao L, Ge R, Wan Z, Zheng D, Li F, Li G, Zhang F. Higher thermal remediation temperature facilitates the sequential bioaugmented reductive dechlorination. JOURNAL OF HAZARDOUS MATERIALS 2024; 475:134825. [PMID: 38876014 DOI: 10.1016/j.jhazmat.2024.134825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 05/07/2024] [Accepted: 06/03/2024] [Indexed: 06/16/2024]
Abstract
The coupling of thermal remediation with microbial reductive dechlorination (MRD) has shown promising potential for the cleanup of chlorinated solvent contaminated sites. In this study, thermal treatment and bioaugmentation were applied in series, where prior higher thermal remediation temperature led to improved TCE dechlorination performance with both better organohalide-respiring bacteria (OHRB) colonization and electron donor availability. The 60 °C was found to be a key temperature point where the promotion effect became obvious. Amplicon sequencing and co-occurrence network analysis demonstrated that temperature was a more dominating factor than bioaugmentation that impacted microbial community structure. Higher temperature of prior thermal treatment resulted in the decrease of richness, diversity of indigenous microbial communities, and simplified the network structure, which benefited the build-up of newcoming microorganisms during bioaugmentation. Thus, the abundance of Desulfitobacterium increased from 0.11 % (25 °C) to 3.10 % (90 °C). Meanwhile, released volatile fatty acids (VFAs) during thermal remediation functioned as electron donors and boosted MRD. Our results provided temperature-specific information on synergistic effect of sequential thermal remediation and bioaugmentation, which contributed to better implementation of the coupled technologies in chloroethene-impacted sites.
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Affiliation(s)
- Wan Huang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Lifeng Cao
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China; National Engineering Laboratory for Site Remediation Technologies, Beijing 100015, China; ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 311215, China
| | - Runlei Ge
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Ziren Wan
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Di Zheng
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Fangzhou Li
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Guanghe Li
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China; National Engineering Laboratory for Site Remediation Technologies, Beijing 100015, China
| | - Fang Zhang
- State Key Joint Laboratory of Environment Simulation and Pollution Control, State Environment Protection Key Laboratory of Microorganism Application and Risk Control, School of Environment, Tsinghua University, Beijing 100084, China; National Engineering Laboratory for Site Remediation Technologies, Beijing 100015, China.
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14
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Lu Q, Liang Q, Wang S. Burning question: Rethinking organohalide degradation strategy for bioremediation applications. Microb Biotechnol 2024; 17:e14539. [PMID: 39075849 PMCID: PMC11286677 DOI: 10.1111/1751-7915.14539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Accepted: 07/12/2024] [Indexed: 07/31/2024] Open
Abstract
Organohalides are widespread pollutants that pose significant environmental hazards due to their high degree of halogenation and elevated redox potentials, making them resistant to natural attenuation. Traditional bioremediation approaches, primarily relying on bioaugmentation and biostimulation, often fall short of achieving complete detoxification. Furthermore, the emergence of complex halogenated pollutants, such as per- and polyfluoroalkyl substances (PFASs), further complicates remediation efforts. Therefore, there is a pressing need to reconsider novel approaches for more efficient remediation of these recalcitrant pollutants. This review proposes novel redox-potential-mediated hybrid bioprocesses, tailored to the physicochemical properties of pollutants and their environmental contexts, to achieve complete detoxification of organohalides. The possible scenarios for the proposed bioremediation approaches are further discussed. In anaerobic environments, such as sediment and groundwater, microbial reductive dehalogenation coupled with fermentation and methanogenesis can convert organohalides into carbon dioxide and methane. In environments with anaerobic-aerobic alternation, such as paddy soil and wetlands, a synergistic process involving reduction and oxidation can facilitate the complete mineralization of highly halogenated organic compounds. Future research should focus on in-depth exploration of microbial consortia, the application of ecological principles-guided strategies, and the development of bioinspired-designed techniques. This paper contributes to the academic discourse by proposing innovative remediation strategies tailored to the complexities of organohalide pollution.
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Affiliation(s)
- Qihong Lu
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai)Sun Yat‐Sen UniversityGuangzhouChina
| | - Qi Liang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai)Sun Yat‐Sen UniversityGuangzhouChina
| | - Shanquan Wang
- School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai)Sun Yat‐Sen UniversityGuangzhouChina
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15
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Yang SY, Lai CY, Zhao HP. Influence of microbial inoculation site on trichloroethylene degradation in electrokinetic-enhanced bioremediation of low-permeability soils. ENVIRONMENTAL RESEARCH 2024; 252:118899. [PMID: 38604486 DOI: 10.1016/j.envres.2024.118899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 04/04/2024] [Accepted: 04/07/2024] [Indexed: 04/13/2024]
Abstract
The integration of electrokinetic and bioremediation (EK-BIO) represents an innovative approach for addressing trichloroethylene (TCE) contamination in low-permeability soil. However, there remains a knowledge gap in the impact of the inoculation approach on TCE dechlorination and the microbial response with the presence of co-existing substances. In this study, four 1-dimensional columns were constructed with different inoculation treatments. Monitoring the operation conditions revealed that a stabilization period (∼40 days) was required to reduce voltage fluctuation. The group with inoculation into the soil middle (Group B) exhibited the highest TCE dechlorination efficiency, achieving a TCE removal rate of 84%, which was 1.1-3.2 fold higher compared to the others. Among degraded products in Group B, 39% was ethylene. The physicochemical properties of the post-soil at different regions illustrated that dechlorination coincided with the Fe(III) and SO42- reduction, meaning that the EK-BIO system promoted the formation of a reducing environment. Microbial community analysis demonstrated that Dehalococcoides was only detected in the treatment of injection at soil middle or near the cathode, with abundance enriched by 2.1%-7.2%. The principal components analysis indicated that the inoculation approach significantly affected the evolution of functional bacteria. Quantitative polymerase chain reaction (qPCR) analysis demonstrated that Group B exhibited at least 2.8 and 4.2-fold higher copies of functional genes (tceA, vcrA) than those of other groups. In conclusion, this study contributes to the development of effective strategies for enhancing TCE biodechlorination in the EK-BIO system, which is particularly beneficial for the remediation of low-permeability soils.
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Affiliation(s)
- Si-Ying Yang
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, China
| | - Chun-Yu Lai
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, China
| | - He-Ping Zhao
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Science, Zhejiang University, Hangzhou, China.
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16
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Liu G, Liu S, Yang J, Zhang X, Lu L, Xu H, Ye S, Wu J, Jiang J, Qiao W. Complete biodegradation of tetrabromobisphenol A through sequential anaerobic reductive dehalogenation and aerobic oxidation. JOURNAL OF HAZARDOUS MATERIALS 2024; 470:134217. [PMID: 38583197 DOI: 10.1016/j.jhazmat.2024.134217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 04/01/2024] [Accepted: 04/03/2024] [Indexed: 04/09/2024]
Abstract
Tetrabromobisphenol A (TBBPA), a common brominated flame retardant and a notorious pollutant in anaerobic environments, resists aerobic degradation but can undergo reductive dehalogenation to produce bisphenol A (BPA), an endocrine disruptor. Conversely, BPA is resistant to anaerobic biodegradation but susceptible to aerobic degradation. Microbial degradation of TBBPA via anoxic/oxic processes is scarcely documented. We established an anaerobic microcosm for TBBPA dehalogenation to BPA facilitated by humin. Dehalobacter species increased with a growth yield of 1.5 × 108 cells per μmol Br- released, suggesting their role in TBBPA dehalogenation. We innovatively achieved complete and sustainable biodegradation of TBBPA in sand/soil columns columns, synergizing TBBPA reductive dehalogenation by anaerobic functional microbiota and BPA aerobic oxidation by Sphingomonas sp. strain TTNP3. Over 42 days, 95.11 % of the injected TBBPA in three batches was debrominated to BPA. Following injection of strain TTNP3 cells, 85.57 % of BPA was aerobically degraded. Aerobic BPA degradation column experiments also indicated that aeration and cell colonization significantly increased degradation rates. This treatment strategy provides valuable technical insights for complete TBBPA biodegradation and analogous contaminants.
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Affiliation(s)
- Guiping Liu
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China
| | - Songmeng Liu
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China
| | - Jie Yang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China
| | - Xiaoyang Zhang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China
| | - Lianghua Lu
- Jiangsu Provincial Academy of Environmental Science, Jiangsu Provincial Key Laboratory of Environmental Engineering, Nanjing 210036, China
| | - Hongxia Xu
- Key Laboratory of Surficial Geochemistry, Ministry of Education, School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Shujun Ye
- Key Laboratory of Surficial Geochemistry, Ministry of Education, School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Jichun Wu
- Key Laboratory of Surficial Geochemistry, Ministry of Education, School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Jiandong Jiang
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China.
| | - Wenjing Qiao
- Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture and Rural Affairs, Nanjing 210095, China.
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17
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Zhang Z, Ali M, Tang Z, Sun Q, Wang Q, Liu X, Yin L, Yan S, Xu M, Coulon F, Song X. Unveiling complete natural reductive dechlorination mechanisms of chlorinated ethenes in groundwater: Insights from functional gene analysis. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:134034. [PMID: 38521036 DOI: 10.1016/j.jhazmat.2024.134034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/22/2024] [Accepted: 03/12/2024] [Indexed: 03/25/2024]
Abstract
Monitored natural attenuation (MNA) of chlorinated ethenes (CEs) has proven to be a cost-effective and environment-friendly approach for groundwater remediation. In this study, the complete dechlorination of CEs with formation of ethene under natural conditions, were observed at two CE-contaminated sites, including a pesticide manufacturing facility (PMF) and a fluorochemical plant (FCP), particularly in the deeply weathered bedrock aquifer at the FCP site. Additionally, a higher abundance of CE-degrading bacteria was identified with heightened dechlorination activities at the PMF site, compared to the FCP site. The reductive dehalogenase genes and Dhc 16 S rRNA gene were prevalent at both sites, even in groundwater where no CE dechlorination was observed. vcrA and bvcA was responsible for the complete dechlorination at the PMF and FCP site, respectively, indicating the distinct contributions of functional microbial species at each site. The correlation analyses suggested that Sediminibacterium has the potential to achieve the complete dechlorination at the FCP site. Moreover, the profiles of CE-degrading bacteria suggested that dechlorination occurred under Fe3+/sulfate-reducing and nitrate-reducing conditions at the PMF and FCP site, respectively. Overall these findings provided multi-lines of evidence on the diverse mechanisms of CE-dechlorination under natural conditions, which can provide valuable guidance for MNA strategies implementation.
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Affiliation(s)
- Zhuanxia Zhang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Mukhtiar Ali
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiwen Tang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qi Sun
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Qing Wang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xin Liu
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Lipu Yin
- China State Science Dingshi Environmental Engineering CO., LTD, Beijing, China
| | - Song Yan
- China State Science Dingshi Environmental Engineering CO., LTD, Beijing, China
| | - Minmin Xu
- Shandong Academy of Environmental Sciences Co., LTD, Jinan 250013, China
| | - Frederic Coulon
- School of Water, Energy and Environment, Cranfield University, Cranfield MK43 0AL, UK
| | - Xin Song
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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18
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Li ZT, Song X, Yuan S, Zhao HP. Unveiling the inhibitory mechanisms of chromium exposure on microbial reductive dechlorination: Kinetics and microbial responses. WATER RESEARCH 2024; 253:121328. [PMID: 38382292 DOI: 10.1016/j.watres.2024.121328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 02/14/2024] [Accepted: 02/15/2024] [Indexed: 02/23/2024]
Abstract
Chromium and organochlorine solvents, particularly trichloroethene (TCE), are pervasive co-existing contaminants in subsurface aquifers due to their extensive industrial use and improper disposal practices. In this study, we investigated the microbial dechlorination kinetics under different TCE-Cr(Ⅲ/VI) composite pollution conditions and elucidated microbial response mechanisms based on community shift patterns and metagenomic analysis. Our results revealed that the reductive dechlorinating consortium had high resistance to Cr(III) but extreme sensitivity to Cr(VI) disturbance, resulting in a persistent inhibitory effect on subsequent dechlorination. Interestingly, the vinyl chloride-respiring organohalide-respiring bacteria (OHRB) was notably more susceptible to Cr(III/VI) exposure than the trichloroethene-respiring one, possibly due to inferior competition for growth substrates, such as electron donors. In terms of synergistic non-OHRB populations, Cr(III/VI) exposure had limited impacts on lactate fermentation but significantly interfered with H2-producing acetogenesis, leading to inhibited microbial dechlorination due to electron donor deficiencies. However, this inhibition can be effectively mitigated by the amendment of exogenous H2 supply. Furthermore, being the predominant OHRB, Dehalococcoides have inherent Cr(VI) resistance defects and collaborate with synergistic non-OHRB populations to achieve concurrent bio-detoxication of Cr(VI) and TCE. Our findings expand the understanding of the response patterns of different functional populations towards Cr(III/VI) stress, and provide valuable insights for the development of in situ bioremediation strategies for sites co-contaminated with chloroethene and chromium.
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Affiliation(s)
- Zheng-Tao Li
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310030, PR China
| | - Xin Song
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, PR China
| | - Songhu Yuan
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, No. 68 Jincheng Street, East Lake High-Tech Development Zone, Wuhan 430078, PR China
| | - He-Ping Zhao
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310030, PR China.
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19
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Ma J, Li Y, Zhang X, Li J, Lin Q, Zhu Y, Ruan Z, Ni Z, Qiu R. Modified nano zero-valent iron coupling microorganisms to degrade BDE-209: Degradation pathways and microbial responses. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133378. [PMID: 38160554 DOI: 10.1016/j.jhazmat.2023.133378] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 12/24/2023] [Accepted: 12/25/2023] [Indexed: 01/03/2024]
Abstract
Polybrominated diphenyl ethers (PBDEs) in soil and groundwater have garnered considerable attention owing to the significant bioaccumulation potential and toxicity. Currently, the coupling treatment method of nano zero-valent iron (nZVI) with dehalogenation microorganisms is a research hotspot in the field of PBDE degradation. In this study, various systems were established within anaerobic environments, including the nZVI-only system, microorganism-only system, and the nZVI + microorganisms system. The aim was to investigate the degradation pathway of BDE-209 and elucidate the degradation mechanism within the coupled system. The results indicated that the degradation efficiency of the coupled system was better than that of the nZVI-only or microorganism-only system. Two modified nZVI (carboxymethyl cellulose and polyacrylamide) were prepared to improve the coupling degradation efficiency. CMC-nZVI showed the highest stability, and the coupled system consisting of microorganisms and CMC-nZVI showed the best degradation effect among all of the systems in this study, reaching 89.53% within 30 days. Furthermore, 22 intermediate products were detected in the coupling systems. Notably, changing the inoculation time did not significantly improve the degradation effect. The expression changes of the two reductive dehalogenase genes, e.g. TceA and Vcr, reflected the stress response and self-recovery ability of the dehalogenating bacteria, indicating such genes can be used as biomarker for evaluating the degradation performance of the coupling system. These findings provide a better understanding about the mechanism of coupling debromination process and the direction for the optimization and on-site repair of coupled systems.
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Affiliation(s)
- Jing Ma
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Yingping Li
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Xing Zhang
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Jingjing Li
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Qingqi Lin
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Yanping Zhu
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Zhepu Ruan
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Zhuobiao Ni
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China.
| | - Rongliang Qiu
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China.
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