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Blanc C, Oriol L, Rajeshkumar T, Bijani C, Serpentini CL, Giraud N, Maron L, Hureau C, Mathieu E. Lanthanide(III)-dependent hydration of the methanol dehydrogenase cofactor, pyrroloquinoline quinone. J Inorg Biochem 2025; 270:112924. [PMID: 40328142 DOI: 10.1016/j.jinorgbio.2025.112924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 03/28/2025] [Accepted: 04/12/2025] [Indexed: 05/08/2025]
Abstract
The mechanism by which pyrroloquinoline quinone (PQQ)-dependent methanol dehydrogenases (MDH), bearing either a Ca2+ or a lanthanide (Ln3+) ion in their active site, oxidize methanol has been intensely debated. In particular, the Ln3+-dependent activity of Ln-MDH remains poorly understood. The lack of experimental evidence represents a significant limitation to improve our understanding of these enzymes. In this work, we propose that insights on Ca- and Ln-MDH reactivity can be gained by examining a model reaction, the hydration of PQQ. Indeed, this reaction is similar to the first step of the putative methanol addition-elimination mechanism and is expected to be similarly influenced by the metal ion. The apparent affinity constants of PQQ for Ca2+ and Ln3+ were determined by UVvis absorption spectroscopy. Ln-PQQ complexes in aqueous solution were analyzed by steady-state and time-resolved fluorescence spectroscopy. The thermodynamic and kinetic parameters describing the equilibrium were obtained by variable-temperature and proton exchange spectroscopy (EXSY) NMR, as well as DFT calculations. Results demonstrated a Ln-dependent exchange rate for PQQ hydration equilibrium, the late and more Lewis acidic Ln3+ having the stronger impact.
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Affiliation(s)
- Camille Blanc
- LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France
| | - Lauriane Oriol
- LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France
| | - Thayalan Rajeshkumar
- Laboratoire de Physique et Chimie des Nano-objets, Institut National des Sciences Appliquées, 31077 Toulouse, France
| | | | - Charles-Louis Serpentini
- Laboratoire Softmat, Université de Toulouse, CNRS UMR 5623, Université Toulouse III - Paul Sabatier, Toulouse, France
| | - Nicolas Giraud
- Université Paris Cité, CNRS, Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques, F-75006 Paris, France
| | - Laurent Maron
- Laboratoire de Physique et Chimie des Nano-objets, Institut National des Sciences Appliquées, 31077 Toulouse, France
| | | | - Emilie Mathieu
- LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France.
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2
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Cao H, Guo Y, Li B, Tang Q, Hao H, Wang Z, Xu C. Extraction and complexation of trivalent americium and lanthanides using an asymmetric picolinic acid-derived tridentate N,O-hybrid ligand. Dalton Trans 2025; 54:1964-1971. [PMID: 39670795 DOI: 10.1039/d4dt03016h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2024]
Abstract
The extraction and complexation of trivalent americium (Am) and lanthanides (Ln) using an asymmetric picolinic acid-derived tridentate N,O-hybrid ligand, 6-(dioctylcarbamoyl)picolinic acid (DOAPA), have been studied through both experimental and theoretical methods. DOAPA exhibits effective and fast extraction of Am(III) and Ln(III). The extraction is driven by favorable enthalpy change. Slope analysis, absorption spectroscopy and NMR titration indicate that both Am(III) and Ln(III) coordinate with DOAPA to form complexes of a 1 : 3 stoichiometry (metal to ligand). Meanwhile, luminescence and mass spectral studies suggest that three deprotonated tridentate DOAPA ligands (L-) substitute all the H2O molecules in the primary coordination sphere of Eu(III), resulting in the extraction of a neutral complex into the organic phase. Further theoretical calculations reveal that a more robust interaction between DOAPA and Am(III) relative to Eu(III) as well as a higher degree of covalence in Am-N/O bonds than in Eu-N/O bonds leads to slight selectivity of Am(III) over Eu(III).
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Affiliation(s)
- Hong Cao
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Yuxiao Guo
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Bin Li
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Qilong Tang
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Huaixin Hao
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Zhipeng Wang
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
| | - Chao Xu
- Institute of Nuclear and New Energy Technology, Tsinghua University, 100084, Beijing, China.
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3
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Thompson PJ, Boggs DG, Wilson CA, Bruchs AT, Velidandla U, Bridwell-Rabb J, Olshansky L. Structure-driven development of a biomimetic rare earth artificial metalloprotein. Proc Natl Acad Sci U S A 2024; 121:e2405836121. [PMID: 39116128 PMCID: PMC11331073 DOI: 10.1073/pnas.2405836121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 07/05/2024] [Indexed: 08/10/2024] Open
Abstract
The 2011 discovery of the first rare earth-dependent enzyme in methylotrophic Methylobacterium extorquens AM1 prompted intensive research toward understanding the unique chemistry at play in these systems. This enzyme, an alcohol dehydrogenase (ADH), features a La3+ ion closely associated with redox-active coenzyme pyrroloquinoline quinone (PQQ) and is structurally homologous to the Ca2+-dependent ADH from the same organism. AM1 also produces a periplasmic PQQ-binding protein, PqqT, which we have now structurally characterized to 1.46-Å resolution by X-ray diffraction. This crystal structure reveals a Lys residue hydrogen-bonded to PQQ at the site analogously occupied by a Lewis acidic cation in ADH. Accordingly, we prepared K142A- and K142D-PqqT variants to assess the relevance of this site toward metal binding. Isothermal titration calorimetry experiments and titrations monitored by UV-Vis absorption and emission spectroscopies support that K142D-PqqT binds tightly (Kd = 0.6 ± 0.2 μM) to La3+ in the presence of bound PQQ and produces spectral signatures consistent with those of ADH enzymes. These spectral signatures are not observed for WT- or K142A-variants or upon addition of Ca2+ to PQQ ⸦ K142D-PqqT. Addition of benzyl alcohol to La3+-bound PQQ ⸦ K142D-PqqT (but not Ca2+-bound PQQ ⸦ K142D-PqqT, or La3+-bound PQQ ⸦ WT-PqqT) produces spectroscopic changes associated with PQQ reduction, and chemical trapping experiments reveal the production of benzaldehyde, supporting ADH activity. By creating a metal binding site that mimics native ADH enzymes, we present a rare earth-dependent artificial metalloenzyme primed for future mechanistic, biocatalytic, and biosensing applications.
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Affiliation(s)
- Peter J. Thompson
- Center for Biophysics and Quantitative Biology, University of Illinois, Urbana-Champaign, Urbana, IL61801
| | - David G. Boggs
- Department of Chemistry, University of Michigan, Ann Arbor, MI48109
| | - Charles A. Wilson
- Department of Chemistry, Materials Research Laboratory, Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL61801
| | - Austin T. Bruchs
- Department of Chemistry, University of Michigan, Ann Arbor, MI48109
| | - Uditha Velidandla
- Department of Chemistry, Materials Research Laboratory, Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL61801
| | | | - Lisa Olshansky
- Center for Biophysics and Quantitative Biology, University of Illinois, Urbana-Champaign, Urbana, IL61801
- Department of Chemistry, Materials Research Laboratory, Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL61801
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4
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Zytnick AM, Gutenthaler-Tietze SM, Aron AT, Reitz ZL, Phi MT, Good NM, Petras D, Daumann LJ, Martinez-Gomez NC. Identification and characterization of a small-molecule metallophore involved in lanthanide metabolism. Proc Natl Acad Sci U S A 2024; 121:e2322096121. [PMID: 39078674 PMCID: PMC11317620 DOI: 10.1073/pnas.2322096121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 06/14/2024] [Indexed: 07/31/2024] Open
Abstract
Many bacteria secrete metallophores, low-molecular-weight organic compounds that bind ions with high selectivity and affinity, in order to access essential metals from the environment. Previous work has elucidated the structures and biosynthetic machinery of metallophores specific for iron, zinc, nickel, molybdenum, and copper. No physiologically relevant lanthanide-binding metallophore has been discovered despite the knowledge that lanthanide metals (Ln) have been revealed to be essential cofactors for certain alcohol dehydrogenases across a diverse range of phyla. Here, we report the biosynthetic machinery, the structure, and the physiological relevance of a lanthanophore, methylolanthanin. The structure of methylolanthanin exhibits a unique 4-hydroxybenzoate moiety which has not previously been described in other metallophores. We find that production of methylolanthanin is required for normal levels of Ln accumulation in the methylotrophic bacterium Methylobacterium extorquens AM1, while overexpression of the molecule greatly increases bioaccumulation and adsorption. Our results provide a clearer understanding of how Ln-utilizing bacteria sense, scavenge, and store Ln; essential processes in the environment where Ln are poorly bioavailable. More broadly, the identification of this lanthanophore opens doors for study of how biosynthetic gene clusters are repurposed for additional functions and the complex relationship between metal homeostasis and fitness.
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Affiliation(s)
- Alexa M. Zytnick
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA94720
| | - Sophie M. Gutenthaler-Tietze
- Department of Chemistry, Ludwig-Maximilians-Universität München, Munich 81377, Germany
- Chair of Bioinorganic Chemistry, Heinrich-Heine-Universität Düsseldorf, Düsseldorf40225, Germany
| | - Allegra T. Aron
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO80210
| | - Zachary L. Reitz
- Bioinformatics Group, Wageningen University, Wageningen6708PB, The Netherlands
- Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA93117
| | - Manh Tri Phi
- Department of Chemistry, Ludwig-Maximilians-Universität München, Munich 81377, Germany
| | - Nathan M. Good
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA94720
| | - Daniel Petras
- Interfaculty Institute of Microbiology and Medicine, Universität Tübingen, Tübingen72074, Germany
| | - Lena J. Daumann
- Department of Chemistry, Ludwig-Maximilians-Universität München, Munich 81377, Germany
- Chair of Bioinorganic Chemistry, Heinrich-Heine-Universität Düsseldorf, Düsseldorf40225, Germany
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5
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Lu Z, Jiang H, Yang D, Tang H, Hamouda HI, Wang T, Mao X. Characterization of a λ-Carrageenase Mutant with the Generation of Long-Chain λ-Neocarrageenan Oligosaccharides. Foods 2024; 13:1923. [PMID: 38928863 PMCID: PMC11202985 DOI: 10.3390/foods13121923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/12/2024] [Accepted: 06/14/2024] [Indexed: 06/28/2024] Open
Abstract
λ-carrageenan oligosaccharides can be widely applied in the food, pharmaceutical, medicine and cosmetic industries due to their abundant bioactivities, and they are important products for the high-value utilization of λ-carrageenan. However, oligosaccharides with different degrees of polymerization have different properties, and the final products of λ-carrageenase reported so far are mainly λ-neocarrabiose, λ-neocarratetraose and λ-neocarrahexaose without longer-chain oligosaccharides. Further research is consequently required. Herein, a mutant λ-carrageenase was constructed by deleting the pyrroloquinoline quinone-like domain of OUC-CglA derived from Maribacter vaceletii. Interestingly, it was discovered that the majority of final products of the mutant OUC-CglA-DPQQ were long-chain oligosaccharides with a polymerization degree of 10-20, which underwent significant changes compared to that of OUC-CglA. Additionally, without the pyrroloquinoline quinone-like domain, fewer inclusion bodies were produced throughout the expression process, and the yield of the λ-carrageenase increased about five-fold. However, compared to its parental enzyme, significant changes were made to its enzymatic properties. Its optimal temperature and pH were 15 °C and pH 7.0, and its specific activity was 51.59 U/mg. The stability of the enzyme decreased. Thus, it was found that the deleting domain was related to the formation of inclusion bodies, the stability of the enzyme, the activity of the enzyme and the composition of the products.
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Affiliation(s)
- Zewei Lu
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
| | - Hong Jiang
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
- Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Qingdao Key Laboratory of Food Biotechnology, Qingdao 266404, China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, China
- Sanya Ocean Institute, Ocean University of China, Sanya 572024, China
| | - Dianqi Yang
- Department of Food Science and Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Hengxin Tang
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
| | - Hamed I. Hamouda
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
| | - Tao Wang
- Sanya Ocean Institute, Ocean University of China, Sanya 572024, China
| | - Xiangzhao Mao
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
- Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Qingdao Key Laboratory of Food Biotechnology, Qingdao 266404, China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, China
- Sanya Ocean Institute, Ocean University of China, Sanya 572024, China
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6
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Good N, Kang-Yun CS, Su MZ, Zytnick AM, Barber CC, Vu HN, Grace JM, Nguyen HH, Zhang W, Skovran E, Fan M, Park DM, Martinez-Gomez NC. Scalable and Consolidated Microbial Platform for Rare Earth Element Leaching and Recovery from Waste Sources. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:570-579. [PMID: 38150661 PMCID: PMC10785750 DOI: 10.1021/acs.est.3c06775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 11/13/2023] [Accepted: 11/20/2023] [Indexed: 12/29/2023]
Abstract
Chemical methods for the extraction and refinement of technologically critical rare earth elements (REEs) are energy-intensive, hazardous, and environmentally destructive. Current biobased extraction systems rely on extremophilic organisms and generate many of the same detrimental effects as chemical methodologies. The mesophilic methylotrophic bacterium Methylobacterium extorquens AM1 was previously shown to grow using electronic waste by naturally acquiring REEs to power methanol metabolism. Here we show that growth using electronic waste as a sole REE source is scalable up to 10 L with consistent metal yields without the use of harsh acids or high temperatures. The addition of organic acids increases REE leaching in a nonspecific manner. REE-specific bioleaching can be engineered through the overproduction of REE-binding ligands (called lanthanophores) and pyrroloquinoline quinone. REE bioaccumulation increases with the leachate concentration and is highly specific. REEs are stored intracellularly in polyphosphate granules, and genetic engineering to eliminate exopolyphosphatase activity increases metal accumulation, confirming the link between phosphate metabolism and biological REE use. Finally, we report the innate ability of M. extorquens to grow using other complex REE sources, including pulverized smartphones, demonstrating the flexibility and potential for use as a recovery platform for these critical metals.
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Affiliation(s)
- Nathan
M. Good
- Department
of Plant and Microbial Biology, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Christina S. Kang-Yun
- Physical
and Life Sciences Directorate, Lawrence
Livermore National Laboratory, Livermore, California 94550, United States
| | - Morgan Z. Su
- Department
of Plant and Microbial Biology, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Alexa M. Zytnick
- Department
of Plant and Microbial Biology, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Colin C. Barber
- Department
of Plant and Microbial Biology, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Huong N. Vu
- Department
of Biological Sciences, San José
State University, San José, California 95192, United States
| | - Joseph M. Grace
- Department
of Biological Sciences, San José
State University, San José, California 95192, United States
| | - Hoang H. Nguyen
- Department
of Biological Sciences, San José
State University, San José, California 95192, United States
| | - Wenjun Zhang
- Department
of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Elizabeth Skovran
- Department
of Biological Sciences, San José
State University, San José, California 95192, United States
| | - Maohong Fan
- Department
of Chemical and Biomedical Engineering, University of Wyoming, Laramie, Wyoming 82071, United States
| | - Dan M. Park
- Physical
and Life Sciences Directorate, Lawrence
Livermore National Laboratory, Livermore, California 94550, United States
| | - Norma Cecilia Martinez-Gomez
- Department
of Plant and Microbial Biology, University
of California, Berkeley, Berkeley, California 94720, United States
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7
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Sweeney KJ, Han X, Müller UF. A ribozyme that uses lanthanides as cofactor. Nucleic Acids Res 2023; 51:7163-7173. [PMID: 37326001 PMCID: PMC10415125 DOI: 10.1093/nar/gkad513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 05/10/2023] [Accepted: 06/13/2023] [Indexed: 06/17/2023] Open
Abstract
To explore how an early, RNA-based life form could have functioned, in vitro selection experiments have been used to develop catalytic RNAs (ribozymes) with relevant functions. We previously identified ribozymes that use the prebiotically plausible energy source cyclic trimetaphosphate (cTmp) to convert their 5'-hydroxyl group to a 5'-triphosphate. While these ribozymes were developed in the presence of Mg2+, we tested here whether lanthanides could also serve as catalytic cofactors because lanthanides are ideal catalytic cations for this reaction. After an in vitro selection in the presence of Yb3+, several active sequences were isolated, and the most active RNA was analyzed in more detail. This ribozyme required lanthanides for activity, with highest activity at a 10:1 molar ratio of cTmp : Yb3+. Only the four heaviest lanthanides gave detectable signals, indicating a high sensitivity of ribozyme catalysis to the lanthanide ion radius. Potassium and Magnesium did not facilitate catalysis alone but they increased the lanthanide-mediated kOBS by at least 100-fold, with both K+ and Mg2+ modulating the ribozyme's secondary structure. Together, these findings show that RNA is able to use the unique properties of lanthanides as catalytic cofactor. The results are discussed in the context of early life forms.
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Affiliation(s)
- Kevin J Sweeney
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA
| | - Xu Han
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA
| | - Ulrich F Müller
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA
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8
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Daumann LJ, Pol A, Op den Camp HJM, Martinez-Gomez NC. A perspective on the role of lanthanides in biology: Discovery, open questions and possible applications. Adv Microb Physiol 2022; 81:1-24. [PMID: 36167440 DOI: 10.1016/bs.ampbs.2022.06.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Because of their use in high technologies like computers, smartphones and renewable energy applications, lanthanides (belonging to the group of rare earth elements) are essential for our daily lives. A range of applications in medicine and biochemical research made use of their photo-physical properties. The discovery of a biological role for lanthanides has boosted research in this new field. Several methanotrophs and methylotrophs are strictly dependent on the presence of lanthanides in the growth medium while others show a regulatory response. After the first demonstration of a lanthanide in the active site of the XoxF-type pyrroloquinoline quinone methanol dehydrogenases, follow-up studies showed the same for other pyrroloquinoline quinone-containing enzymes. In addition, research focused on the effect of lanthanides on regulation of gene expression and uptake mechanism into bacterial cells. This review briefly describes the discovery of the role of lanthanides in biology and focuses on open questions in biological lanthanide research and possible application of lanthanide-containing bacteria and enzymes in recovery of these special elements.
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Affiliation(s)
- Lena J Daumann
- Department of Chemistry, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Arjan Pol
- Department of Microbiology, RIBES, Radboud University, Nijmegen, The Netherlands
| | - Huub J M Op den Camp
- Department of Microbiology, RIBES, Radboud University, Nijmegen, The Netherlands.
| | - N Cecilia Martinez-Gomez
- Department of Plant and Microbial Biology, University of California, Berkeley, California, United States
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9
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Danaf NA, Kretzschmar J, Jahn B, Singer H, Pol A, Op den Camp HJM, Steudtner R, Lamb DC, Drobot B, Daumann LJ. Studies of pyrroloquinoline quinone species in solution and in lanthanide-dependent methanol dehydrogenases. Phys Chem Chem Phys 2022; 24:15397-15405. [PMID: 35704886 DOI: 10.1039/d2cp00311b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Pyrroloquinoline quinone (PQQ) is a redox cofactor in calcium- and lanthanide-dependent alcohol dehydrogenases that has been known and studied for over 40 years. Despite its long history, many questions regarding its fluorescence properties, speciation in solution and in the active site of alcohol dehydrogenase remain open. Here we investigate the effects of pH and temperature on the distribution of different PQQ species (H3PQQ to PQQ3- in addition to water adducts and in complex with lanthanides) with NMR and UV-Vis spectroscopy as well as time-resolved laser-induced fluorescence spectroscopy (TRLFS). Using a europium derivative from a new, recently-discovered class of lanthanide-dependent methanol dehydrogenase (MDH) enzymes, we utilized two techniques to monitor Ln binding to the active sites of these enzymes. Employing TRLFS, we were able to follow Eu(III) binding directly to the active site of MDH using its luminescence and could quantify three Eu(III) states: Eu(III) in the active site of MDH, but also in solution as PQQ-bound Eu(III) and in the aquo-ion form. Additionally, we used the antenna effect to study PQQ and simultaneously Eu(III) in the active site.
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Affiliation(s)
- Nader Al Danaf
- Department of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstraße 5 - 13, 81377 München, Germany. .,Center for NanoScience, Ludwig-Maximilians-University Munich, Geschwister-Scholl Platz 1, 80539 München, Germany
| | - Jerome Kretzschmar
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf e.V., Bautzner Landstraße 400, 01328 Dresden, Germany.
| | - Berenice Jahn
- Department of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstraße 5 - 13, 81377 München, Germany.
| | - Helena Singer
- Department of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstraße 5 - 13, 81377 München, Germany.
| | - Arjan Pol
- Department of Microbiology, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Huub J M Op den Camp
- Department of Microbiology, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Robin Steudtner
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf e.V., Bautzner Landstraße 400, 01328 Dresden, Germany.
| | - Don C Lamb
- Department of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstraße 5 - 13, 81377 München, Germany. .,Center for NanoScience, Ludwig-Maximilians-University Munich, Geschwister-Scholl Platz 1, 80539 München, Germany
| | - Björn Drobot
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf e.V., Bautzner Landstraße 400, 01328 Dresden, Germany.
| | - Lena J Daumann
- Department of Chemistry, Ludwig-Maximilians-University Munich, Butenandtstraße 5 - 13, 81377 München, Germany.
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10
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Fujitani Y, Shibata T, Tani A. A Periplasmic Lanthanide Mediator, Lanmodulin, in Methylobacterium aquaticum Strain 22A. Front Microbiol 2022; 13:921636. [PMID: 35814700 PMCID: PMC9260416 DOI: 10.3389/fmicb.2022.921636] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Accepted: 06/06/2022] [Indexed: 11/24/2022] Open
Abstract
Methylobacterium and Methylorubrum species oxidize methanol via pyrroloquinoline quinone-methanol dehydrogenases (MDHs). MDHs can be classified into two major groups, Ca2+-dependent MDH (MxaF) and lanthanide (Ln3+)-dependent MDH (XoxF), whose expression is regulated by the availability of Ln3+. A set of a siderophore, TonB-dependent receptor, and an ABC transporter that resembles the machinery for iron uptake is involved in the solubilization and transport of Ln3+. The transport of Ln3+ into the cytosol enhances XoxF expression. A unique protein named lanmodulin from Methylorubrum extorquens strain AM1 was identified as a specific Ln3+-binding protein, and its biological function was implicated to be an Ln3+ shuttle in the periplasm. In contrast, it remains unclear how Ln3+ levels in the cells are maintained, because Ln3+ is potentially deleterious to cellular systems due to its strong affinity to phosphate ions. In this study, we investigated the function of a lanmodulin homolog in Methylobacterium aquaticum strain 22A. The expression of a gene encoding lanmodulin (lanM) was induced in response to the presence of La3+. A recombinant LanM underwent conformational change upon La3+ binding. Phenotypic analyses on lanM deletion mutant and overexpressing strains showed that LanM is not necessary for the wild-type and XoxF-dependent mutant’s methylotrophic growth. We found that lanM expression was regulated by MxcQE (a two-component regulator for MxaF) and TonB_Ln (a TonB-dependent receptor for Ln3+). The expression level of mxcQE was altered to be negatively dependent on Ln3+ concentration in ∆lanM, whereas it was constant in the wild type. Furthermore, when exposed to La3+, ∆lanM showed an aggregating phenotype, cell membrane impairment, La deposition in the periplasm evidenced by electron microscopy, differential expression of proteins involved in membrane integrity and phosphate starvation, and possibly lower La content in the membrane vesicle (MV) fractions. Taken together, we concluded that lanmodulin is involved in the complex regulation mechanism of MDHs and homeostasis of cellular Ln levels by facilitating transport and MV-mediated excretion.
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Affiliation(s)
- Yoshiko Fujitani
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
| | | | - Akio Tani
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
- *Correspondence: Akio Tani,
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11
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Satheeshkumar K, Saravana Kumar P, Nandhini C, Shanmugapriya R, Vennila K, Elango KP. A simple metal ion displacement-type turn-on fluorescent probe for the detection of halide ions in 100% water – Spectroscopic and TD-DFT investigations. INORG CHEM COMMUN 2022. [DOI: 10.1016/j.inoche.2022.109299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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12
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Schäfer A, Vetsova VA, Schneider EK, Kappes M, Seitz M, Daumann LJ, Weis P. Ion Mobility Studies of Pyrroloquinoline Quinone Aza-Crown Ether-Lanthanide Complexes. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022; 33:722-730. [PMID: 35300493 DOI: 10.1021/jasms.2c00023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Lanthanide-dependent enzymes and their biomimetic complexes have arisen as an interesting target of research in the past decade. These enzymes, specifically, pyrroloquinoline quinone (PQQ)-bearing methanol dehydrogenases, efficiently convert alcohols to the respective aldehydes. To rationally design bioinspired alcohol dehydrogenation catalysts, it is imperative to understand the species involved in catalysis. However, given the extremely flexible coordination sphere of lanthanides, it is often difficult to assess the number and nature of the active species. Here, we show how such questions can be addressed by using a combination of ion mobility spectrometry, mass spectrometry, and quantum-chemical calculations to study the test systems PQQ and lanthanide-PQQ-crown ether ligand complexes. Specifically, we determine the gas-phase structures of [PQQH2]-, [PQQH2+H2O]-, [PQQH2+MeOH]-, [PQQ-15c5+H]+, and [PQQ-15c5+Ln+NO3]2+ (Ln = La to Lu, except Pm). In the latter case, a trend to smaller collision cross sections across the lanthanide series is clearly observable, in line with the well-known lanthanide contraction. We hope that in the future such investigations will help to guide the design and understanding of lanthanide-based biomimetic complexes optimized for catalytic function.
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Affiliation(s)
- Alexander Schäfer
- Karlsruhe Institute of Technology Institute of Physical Chemistry Fritz-Haber-Weg 2, 76128 Karlsruhe, Germany
| | - Violeta A Vetsova
- Department of Chemistry Ludwig Maximilian University of Munich Butenandtstraße 5-13, 81377 Munich, Germany
| | - Erik K Schneider
- Karlsruhe Institute of Technology Institute of Physical Chemistry Fritz-Haber-Weg 2, 76128 Karlsruhe, Germany
| | - Manfred Kappes
- Karlsruhe Institute of Technology Institute of Physical Chemistry Fritz-Haber-Weg 2, 76128 Karlsruhe, Germany
- Karlsruhe Institute of Technology Institute of Nanotechnology Hermann von Helmholtz Pl 1,76344 Eggenstein Leopoldshafen, Germany
| | - Michael Seitz
- University of Tübingen Institute of Inorganic Chemistry Auf der Morgenstelle 18, 72076 Tübingen, Germany
| | - Lena J Daumann
- Department of Chemistry Ludwig Maximilian University of Munich Butenandtstraße 5-13, 81377 Munich, Germany
| | - Patrick Weis
- Karlsruhe Institute of Technology Institute of Physical Chemistry Fritz-Haber-Weg 2, 76128 Karlsruhe, Germany
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13
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Good NM, Lee HD, Hawker ER, Su MZ, Gilad AA, Martinez-Gomez NC. Hyperaccumulation of Gadolinium by Methylorubrum extorquens AM1 Reveals Impacts of Lanthanides on Cellular Processes Beyond Methylotrophy. Front Microbiol 2022; 13:820327. [PMID: 35369483 PMCID: PMC8969499 DOI: 10.3389/fmicb.2022.820327] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 01/19/2022] [Indexed: 11/20/2022] Open
Abstract
Lanthanides (Ln) are a new group of life metals, and many questions remain regarding how they are acquired and used in biology. Methylotrophic bacteria can acquire, transport, biomineralize, and use Ln as part of a cofactor complex with pyrroloquinoline quinone (PQQ) in alcohol dehydrogenases. For most methylotrophic bacteria use is restricted to the light Ln, which range from lanthanum to samarium (atomic numbers 57–62). Understanding how the cell differentiates between light and heavy Ln, and the impacts of these metals on the metabolic network, will advance the field of Ln biochemistry and give insights into enzyme catalysis, stress homeostasis, and metal biomineralization and compartmentalization. We report robust methanol growth with the heavy Ln gadolinium by a genetic variant of the model methylotrophic bacterium Methylorubrum extorquens AM1, named evo-HLn, for “evolved for Heavy Lanthanides.” A non-synonymous single nucleotide polymorphism in a cytosolic hybrid histidine kinase/response regulator allowed for sweeping transcriptional alterations to heavy metal stress response, methanol oxidation, and central metabolism. Increased expression of genes for Ln acquisition and uptake, production of the Ln-chelating lanthanophore, PQQ biosynthesis, and phosphate transport and metabolism resulted in gadolinium hyperaccumulation of 36-fold with a trade-off for light Ln accumulation. Gadolinium was hyperaccumulated in an enlarged acidocalcisome-like compartment. This is the first evidence of a bacterial intracellular Ln-containing compartment that we name the “lanthasome.” Carotenoid and toblerol biosynthesis were also upregulated. Due to its unique capabilities, evo-HLn can be used to further magnetic resonance imaging (MRI) and bioremediation technologies. In this regard, we show that gadolinium hyperaccumulation was sufficient to produce MRI contrast in whole cells, and that evo-HLn was able to readily acquire the metal from the MRI contrast agent gadopentetic acid. Finally, hyperaccumulation of gadolinium, differential uptake of light and heavy Ln, increased PQQ levels, and phosphate transport provide new insights into strategies for Ln recovery.
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Affiliation(s)
- Nathan M. Good
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
| | - Harvey D. Lee
- Department of Biomedical Engineering, Michigan State University, East Lansing, MI, United States
- Division of Synthetic Biology, The Institute for Quantitative Health Sciences and Engineering, Michigan State University, East Lansing, MI, United States
| | - Emily R. Hawker
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, United States
| | - Morgan Z. Su
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
| | - Assaf A. Gilad
- Department of Biomedical Engineering, Michigan State University, East Lansing, MI, United States
- Division of Synthetic Biology, The Institute for Quantitative Health Sciences and Engineering, Michigan State University, East Lansing, MI, United States
- Department of Radiology, Michigan State University, East Lansing, MI, United States
| | - N. Cecilia Martinez-Gomez
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, United States
- *Correspondence: N. Cecilia Martinez-Gomez,
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14
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Tsurugi H, Mashima K. Renaissance of Homogeneous Cerium Catalysts with Unique Ce(IV/III) Couple: Redox-Mediated Organic Transformations Involving Homolysis of Ce(IV)-Ligand Covalent Bonds. J Am Chem Soc 2021; 143:7879-7890. [PMID: 33904711 DOI: 10.1021/jacs.1c02889] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Recent advances in the catalytic application of cerium complexes were achieved through controlling the Ce(IV/III) redox couple. Although Ce(IV) complexes have been extensively investigated as stoichiometric oxidants in organic synthesis on the basis of their highly positive redox potentials, these complexes can be used as catalysts, not only by introducing supporting ligands around the coordination sphere of cerium, but also by taking advantage of the photoresponsive properties of Ce(IV) and Ce(III) species. Cerium is highly abundant, comparable to that of some first-row transition metals such as copper, nickel, and zinc. Cerium complexes are new and promising homogeneous catalyst candidates for a variety of organic transformations under mild reaction conditions. They are typically used to activate dioxygen to oxidize organic compounds and applied for organic radical generation using the photoresponsive character of Ce(IV) carboxylates and alkoxides as well as electronic transition of Ce(III), in which homolysis of Ce(IV)-ligand covalent bonds is an important step for the overall catalytic cycle. In this Perspective, we first review the early discovery of Ce(OAc)4-mediated oxidative transformations to emphasize the importance of Ce(IV)-OAc bond homolysis in various C-C bond-forming reactions and its relation to recent developments. We then focus on the fundamental importance of Ce(IV) reactivity involving thermal and photoassisted homolysis of the Ce(IV)-ligand covalent bond and the developments regarding Ce(IV/III) redox changes in catalytic reactions together with our recent findings on cerium-based catalysis.
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Affiliation(s)
- Hayato Tsurugi
- Department of Chemistry, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Kazushi Mashima
- Department of Chemistry, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan
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15
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Vetsova VA, Fisher KR, Lumpe H, Schäfer A, Schneider EK, Weis P, Daumann LJ. Pyrroloquinoline Quinone Aza-Crown Ether Complexes as Biomimetics for Lanthanide and Calcium Dependent Alcohol Dehydrogenases*. Chemistry 2021; 27:10087-10098. [PMID: 33872420 PMCID: PMC8361747 DOI: 10.1002/chem.202100346] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Indexed: 12/23/2022]
Abstract
Understanding the role of metal ions in biology can lead to the development of new catalysts for several industrially important transformations. Lanthanides are the most recent group of metal ions that have been shown to be important in biology, that is, in quinone‐dependent methanol dehydrogenases (MDH). Here we evaluate a literature‐known pyrroloquinoline quinone (PQQ) and 1‐aza‐15‐crown‐5 based ligand platform as scaffold for Ca2+, Ba2+, La3+ and Lu3+ biomimetics of MDH and we evaluate the importance of ligand design, charge, size, counterions and base for the alcohol oxidation reaction using NMR spectroscopy. In addition, we report a new straightforward synthetic route (3 steps instead of 11 and 33 % instead of 0.6 % yield) for biomimetic ligands based on PQQ. We show that when studying biomimetics for MDH, larger metal ions and those with lower charge in this case promote the dehydrogenation reaction more effectively and that this is likely an effect of the ligand design which must be considered when studying biomimetics. To gain more information on the structures and impact of counterions of the complexes, we performed collision induced dissociation (CID) experiments and observe that the nitrates are more tightly bound than the triflates. To resolve the structure of the complexes in the gas phase we combined DFT‐calculations and ion mobility measurements (IMS). Furthermore, we characterized the obtained complexes and reaction mixtures using Electron Paramagnetic Resonance (EPR) spectroscopy and show the presence of a small amount of quinone‐based radical.
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Affiliation(s)
- Violeta A Vetsova
- Department of Chemistry, Ludwig Maximilian University of Munich, Butenandtstraße 5-13, 81377, Munich, Germany
| | - Katherine R Fisher
- Department of Chemistry, Ludwig Maximilian University of Munich, Butenandtstraße 5-13, 81377, Munich, Germany
| | - Henning Lumpe
- Department of Chemistry, Ludwig Maximilian University of Munich, Butenandtstraße 5-13, 81377, Munich, Germany
| | - Alexander Schäfer
- Karlsruhe Institute of Technology, Institute of Physical Chemistry, Fritz-Haber-Weg 2, 76128, Karlsruhe, Germany
| | - Erik K Schneider
- Karlsruhe Institute of Technology, Institute of Physical Chemistry, Fritz-Haber-Weg 2, 76128, Karlsruhe, Germany
| | - Patrick Weis
- Karlsruhe Institute of Technology, Institute of Physical Chemistry, Fritz-Haber-Weg 2, 76128, Karlsruhe, Germany
| | - Lena J Daumann
- Department of Chemistry, Ludwig Maximilian University of Munich, Butenandtstraße 5-13, 81377, Munich, Germany
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16
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Featherston ER, Mattocks JA, Tirsch JL, Cotruvo JA. Heterologous expression, purification, and characterization of proteins in the lanthanome. Methods Enzymol 2021; 650:119-157. [PMID: 33867019 DOI: 10.1016/bs.mie.2021.02.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Recent work has revealed that certain lanthanides-in particular, the more earth-abundant, lighter lanthanides-play essential roles in pyrroloquinoline quinone (PQQ) dependent alcohol dehydrogenases from methylotrophic and non-methylotrophic bacteria. More recently, efforts of several laboratories have begun to identify the molecular players (the lanthanome) involved in selective uptake, recognition, and utilization of lanthanides within the cell. In this chapter, we present protocols for the heterologous expression in Escherichia coli, purification, and characterization of many of the currently known proteins that comprise the lanthanome of the model facultative methylotroph, Methylorubrum extorquens AM1. In addition to the methanol dehydrogenase XoxF, these proteins include the associated c-type cytochrome, XoxG, and solute binding protein, XoxJ. We also present new, streamlined protocols for purification of the highly selective lanthanide-binding protein, lanmodulin, and a solute binding protein for PQQ, PqqT. Finally, we discuss simple, spectroscopic methods for determining lanthanide- and PQQ-binding stoichiometry of proteins. We envision that these protocols will be useful to investigators identifying and characterizing novel members of the lanthanome in many organisms.
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Affiliation(s)
- Emily R Featherston
- Department of Chemistry, The Pennsylvania State University, University Park, PA, United States
| | - Joseph A Mattocks
- Department of Chemistry, The Pennsylvania State University, University Park, PA, United States
| | - Jonathan L Tirsch
- Department of Chemistry, The Pennsylvania State University, University Park, PA, United States
| | - Joseph A Cotruvo
- Department of Chemistry, The Pennsylvania State University, University Park, PA, United States.
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17
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Lumpe H, Mayer P, Daumann LJ. Crystal structure of a calcium(II)-pyrroloquinoline quinone (PQQ) complex outside a protein environment. Acta Crystallogr C Struct Chem 2020; 76:1051-1056. [PMID: 33273141 PMCID: PMC7716187 DOI: 10.1107/s2053229620014278] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 10/27/2020] [Indexed: 11/24/2022] Open
Abstract
Pyrroloquinoline quinone (PQQ) is an important cofactor of calcium- and lanthanide-dependent alcohol dehydrogenases, and has been known for over 30 years. Crystal structures of Ca-MDH enzymes (MDH is methanol dehydrogenase) have been known for some time; however, crystal structures of PQQ with biorelevant metal ions have been lacking in the literature for decades. We report here the first crystal structure analysis of a Ca-PQQ complex outside the protein environment, namely, poly[[undecaaquabis(μ-4,5-dioxo-4,5-dihydro-1H-pyrrolo[2,3-f]quinoline-2,7,9-tricarboxylato)tricalcium(II)] dihydrate], {[Ca3(C14H3N2O8)2(H2O)11]·2H2O}n. The complex crystallized as Ca3PQQ2·13H2O with Ca2+ in three different positions and PQQ3-, including an extensive hydrogen-bond network. Similarities and differences to the recently reported structure with biorelevant europium (Eu2PQQ2) are discussed.
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Affiliation(s)
- Henning Lumpe
- Department of Chemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, Munich, Bavaria 81377, Germany
| | - Peter Mayer
- Department of Chemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, Munich, Bavaria 81377, Germany
| | - Lena J. Daumann
- Department of Chemistry, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, Munich, Bavaria 81377, Germany
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18
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Pyrroloquinoline Quinone Modifies Lipid Profile, but Not Insulin Sensitivity, of Palmitic Acid-Treated L6 Myotubes. Int J Mol Sci 2020; 21:ijms21218382. [PMID: 33171690 PMCID: PMC7664924 DOI: 10.3390/ijms21218382] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 11/03/2020] [Accepted: 11/06/2020] [Indexed: 12/28/2022] Open
Abstract
Pyrroloquinoline quinone (PQQ) is a novel stimulator of mitochondrial biogenesis and cellular energy metabolism. This is the first study investigating regulatory mechanisms and metabolic responses underlying PQQ’s action in palmitate-exposed L6 myotubes. Particularly, we assessed alterations in lipid content and composition, expression of metabolic enzymes, and changes in glucose transport. The experiments were conducted using muscle cells subjected to short (2 h) and prolonged (24 h) incubation with PQQ in a sequence of pre- and post-palmitic acid (PA) exposure. We demonstrated the opposite effects of 2 and 24 h treatments with PQQ on lipid content, i.e., a decline in the level of free fatty acids and triacylglycerols in response to short-time PQQ incubation as compared to increases in diacylglycerol and triacylglycerol levels observed after 24 h. We did not demonstrate a significant impact of PQQ on fatty acid transport. The analysis of metabolic enzyme expression showed that the vast majority of PQQ-dependent alterations cumulated in the PA/PQQ 24 h group, including elevated protein amount of peroxisome proliferator activated receptor γ co-activator 1α (PGC-1α), sirtuin-1 (SIRT1), phosphorylated 5′AMP-activated protein kinase (pAMPK), carnitine palmitoyltransferase I (CPT1), citrate synthase (CS), fatty acid synthase (FAS), and serine palmitoyltransferase, long chain base subunit 1 (SPT1). In conclusion, the results mentioned above indicate PQQ-dependent activation of both fatty acid oxidation and lipid synthesis in order to adapt cells to palmitic acid-rich medium, although PQQ did not attenuate insulin resistance in muscle cells.
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19
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The Effects of the Metal Ion Substitution into the Active Site of Metalloenzymes: A Theoretical Insight on Some Selected Cases. Catalysts 2020. [DOI: 10.3390/catal10091038] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
A large number of enzymes need a metal ion to express their catalytic activity. Among the different roles that metal ions can play in the catalytic event, the most common are their ability to orient the substrate correctly for the reaction, to exchange electrons in redox reactions, to stabilize negative charges. In many reactions catalyzed by metal ions, they behave like the proton, essentially as Lewis acids but are often more effective than the proton because they can be present at high concentrations at neutral pH. In an attempt to adapt to drastic environmental conditions, enzymes can take advantage of the presence of many metal species in addition to those defined as native and still be active. In fact, today we know enzymes that contain essential bulk, trace, and ultra-trace elements. In this work, we report theoretical results obtained for three different enzymes each of which contains different metal ions, trying to highlight any differences in their working mechanism as a function of the replacement of the metal center at the active site.
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20
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Lumpe H, Menke A, Haisch C, Mayer P, Kabelitz A, Yusenko KV, Guilherme Buzanich A, Block T, Pöttgen R, Emmerling F, Daumann LJ. The Earlier the Better: Structural Analysis and Separation of Lanthanides with Pyrroloquinoline Quinone. Chemistry 2020; 26:10133-10139. [PMID: 32497263 PMCID: PMC7496819 DOI: 10.1002/chem.202002653] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Indexed: 12/18/2022]
Abstract
Lanthanides (Ln) are critical raw materials, however, their mining and purification have a considerable negative environmental impact and sustainable recycling and separation strategies for these elements are needed. In this study, the precipitation and solubility behavior of Ln complexes with pyrroloquinoline quinone (PQQ), the cofactor of recently discovered lanthanide (Ln) dependent methanol dehydrogenase (MDH) enzymes, is presented. In this context, the molecular structure of a biorelevant europium PQQ complex was for the first time elucidated outside a protein environment. The complex crystallizes as an inversion symmetric dimer, Eu2 PQQ2 , with binding of Eu in the biologically relevant pocket of PQQ. LnPQQ and Ln1Ln2PQQ complexes were characterized by using inductively coupled plasma mass spectrometry (ICP-MS), infrared (IR) spectroscopy, 151 Eu-Mössbauer spectroscopy, X-ray total scattering, and extended X-ray absorption fine structure (EXAFS). It is shown that a natural enzymatic cofactor is capable to achieve separation by precipitation of the notoriously similar, and thus difficult to separate, lanthanides to some extent.
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Affiliation(s)
- Henning Lumpe
- Department of ChemistryLudwig-Maximilians-University MunichButenandtstraße 5–1381377MünchenGermany
| | - Annika Menke
- Department of ChemistryLudwig-Maximilians-University MunichButenandtstraße 5–1381377MünchenGermany
| | - Christoph Haisch
- Chair of Analytical Chemistry and Water ChemistryTechnical University of MunichMarchioninistraße 1781377MünchenGermany
| | - Peter Mayer
- Department of ChemistryLudwig-Maximilians-University MunichButenandtstraße 5–1381377MünchenGermany
| | - Anke Kabelitz
- Division Structure AnalysisFederal Institute for Materials Research and Testing (BAM)Richard-Willstätter-Straße 1112489BerlinGermany
| | - Kirill V. Yusenko
- Division Structure AnalysisFederal Institute for Materials Research and Testing (BAM)Richard-Willstätter-Straße 1112489BerlinGermany
| | - Ana Guilherme Buzanich
- Division Structure AnalysisFederal Institute for Materials Research and Testing (BAM)Richard-Willstätter-Straße 1112489BerlinGermany
| | - Theresa Block
- Institut für Anorganische und Analytische ChemieUniversität Münster (WWU)Corrensstraße 3048149MünsterGermany
| | - Rainer Pöttgen
- Institut für Anorganische und Analytische ChemieUniversität Münster (WWU)Corrensstraße 3048149MünsterGermany
| | - Franziska Emmerling
- Division Structure AnalysisFederal Institute for Materials Research and Testing (BAM)Richard-Willstätter-Straße 1112489BerlinGermany
| | - Lena J. Daumann
- Department of ChemistryLudwig-Maximilians-University MunichButenandtstraße 5–1381377MünchenGermany
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21
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Prejanò M, Russo N, Marino T. How Lanthanide Ions Affect the Addition–Elimination Step of Methanol Dehydrogenases. Chemistry 2020; 26:11334-11339. [DOI: 10.1002/chem.202001855] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 05/04/2020] [Indexed: 01/15/2023]
Affiliation(s)
- Mario Prejanò
- Dipartimento di Chimica e Tecnologie ChimicheUniversità della Calabria 87036 Arcavacata di Rende (CS Italy
| | - Nino Russo
- Dipartimento di Chimica e Tecnologie ChimicheUniversità della Calabria 87036 Arcavacata di Rende (CS Italy
| | - Tiziana Marino
- Dipartimento di Chimica e Tecnologie ChimicheUniversità della Calabria 87036 Arcavacata di Rende (CS Italy
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Zhang C, Huang J, Wei W, Chen Z. Colorimetric identification of lanthanide ions based on two carboxylic acids as an artificial tongue. Analyst 2020; 145:3359-3363. [PMID: 32232246 DOI: 10.1039/d0an00357c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We report a colorimetric array, which consists of two carboxylic acids (quinolinic acid (QA), tannic acid (TCA)) as the sensor element and Eriochrome Black T (EBT) as the colorimetric signal readout. The assay is based on coordination binding between lanthanide ions and EBT, and between lanthanide ions and the carboxylic acids. The competitive binding of lanthanide ions with the carboxylic acids and EBT leads to the change in absorbance and color of the solutions. To test the efficacy of our sensor array, the sensor array was exposed to five target lanthanide ions (La3+, Sm3+, Eu3+, Gd3+ and Yb3+) with diverse concentrations (10, 50, 100, 200, 300, 400, and 500 nM). Linear discriminant analysis (LDA) results show that the sensor array can identify the five lanthanide ions, with a low discrimination limit of 10 nM. More importantly, the sensor array realizes fast discrimination of lanthanide ions in river samples, showing potential in environmental monitoring.
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Affiliation(s)
- Chi Zhang
- Department of Chemistry, Capital Normal University, Beijing, 100048, China.
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Cotruvo JA. The Chemistry of Lanthanides in Biology: Recent Discoveries, Emerging Principles, and Technological Applications. ACS CENTRAL SCIENCE 2019; 5:1496-1506. [PMID: 31572776 PMCID: PMC6764073 DOI: 10.1021/acscentsci.9b00642] [Citation(s) in RCA: 150] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Indexed: 05/18/2023]
Abstract
The essential biological role of rare earth elements lay hidden until the discovery in 2011 that lanthanides are specifically incorporated into a bacterial methanol dehydrogenase. Only recently has this observation gone from a curiosity to a major research area, with the appreciation for the widespread nature of lanthanide-utilizing organisms in the environment and the discovery of other lanthanide-binding proteins and systems for selective uptake. While seemingly exotic at first glance, biological utilization of lanthanides is very logical from a chemical perspective. The early lanthanides (La, Ce, Pr, Nd) primarily used by biology are abundant in the environment, perform similar chemistry to other biologically useful metals and do so more efficiently due to higher Lewis acidity, and possess sufficiently distinct coordination chemistry to allow for selective uptake, trafficking, and incorporation into enzymes. Indeed, recent advances in the field illustrate clear analogies with the biological coordination chemistry of other metals, particularly CaII and FeIII, but with unique twists-including cooperative metal binding to magnify the effects of small ionic radius differences-enabling selectivity. This Outlook summarizes the recent developments in this young but rapidly expanding field and looks forward to potential future discoveries, emphasizing continuity with principles of bioinorganic chemistry established by studies of other metals. We also highlight how a more thorough understanding of the central chemical question-selective lanthanide recognition in biology-may impact the challenging problems of sensing, capture, recycling, and separations of rare earths.
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Affiliation(s)
- Joseph A. Cotruvo
- Department of Chemistry, The Pennsylvania State
University, University Park, Pennsylvania 16802, United
States
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24
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Daumann LJ. Essential and Ubiquitous: The Emergence of Lanthanide Metallobiochemistry. Angew Chem Int Ed Engl 2019; 58:12795-12802. [DOI: 10.1002/anie.201904090] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Lena J. Daumann
- Department of Chemistry Ludwig-Maximilians-Universität München Butenandtstr. 5–13 81377 Munich Germany
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25
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Affiliation(s)
- Lena J. Daumann
- Department Chemie Ludwig-Maximilians-Universität München Butenandtstraße 5–13 81377 München Deutschland
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