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Kockläuner J, Golze D. GW Plus Cumulant Approach for Predicting Core-Level Shakeup Satellites in Large Molecules. J Chem Theory Comput 2025; 21:3101-3119. [PMID: 40029694 PMCID: PMC11948339 DOI: 10.1021/acs.jctc.4c01754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2024] [Revised: 01/28/2025] [Accepted: 01/31/2025] [Indexed: 03/05/2025]
Abstract
Recently, the GW approach has emerged as a valuable tool for computing deep core-level binding energies as measured in X-ray photoemission spectroscopy. However, GW fails to accurately predict shakeup satellite features, which arise from charge-neutral excitations accompanying the ionization. In this work, we extend the GW plus cumulant (GW + C) approach to molecular 1s excitations, deriving conditions under which GW + C can be reliably applied to shakeup processes. We present an efficient implementation with O(N4) scaling with respect to the system size N, within an all-electron framework based on numeric atom-centered orbitals. We demonstrate that decoupling the core and valence spaces is crucial when using localized basis functions. Additionally, we meticulously validate the basis set convergence of the satellite spectrum for 65 spectral functions and identify the importance of diffuse augmenting functions. To assess the accuracy, we apply our GW + C scheme to π-conjugated molecules containing up to 40 atoms, predicting dominant satellite features within 0.5 eV of experimental values. For the acene series, from benzene to pentacene, we demonstrate how GW + C provides critical insights into the interpretation of experimentally observed satellite features.
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Affiliation(s)
- Jannis Kockläuner
- Faculty of Chemistry and
Food Chemistry, Technische Universität
Dresden, 01062 Dresden, Germany
| | - Dorothea Golze
- Faculty of Chemistry and
Food Chemistry, Technische Universität
Dresden, 01062 Dresden, Germany
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2
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Prange MP, Govind N, Stinis P, Ilton ES, Howard AA. Toward a Machine Learning Approach to Interpreting X-ray Spectra of Trace Impurities by Converting XANES to EXAFS. J Phys Chem A 2025; 129:346-355. [PMID: 39718448 DOI: 10.1021/acs.jpca.4c05612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2024]
Abstract
The fact that the photoabsorption spectrum of a material contains information about the atomic structure, commonly understood in terms of multiple scattering theory, is the basis of the popular extended X-ray absorption spectroscopy (EXAFS) technique. How much of the same structural information is present in other complementary spectroscopic signals is not obvious. Here we use a machine learning approach to demonstrate that within theoretical models that accurately predict the EXAFS signal, the extended near-edge region does indeed contain the EXAFS-accessible structural information. We do this by exhibiting deep operator neural networks (DeepONets) that have learned the relationship between the extended and near edge portions of the X-ray absorption spectrum to predict the former from the latter. We find that we can accurately predict the EXAFS spectrum between 6 and 14 Å-1 from the first 6 Å-1 (≈100 eV) of the absorption spectrum of Cu2+ substitutional defects in the Fe3+ mineral hematite (α-Fe2O3). This surprising finding implies that theoretical analyses of X-ray absorption spectra could be implemented that extract the same conclusions as high-quality EXAFS studies from spectra collected over a much smaller range of photon energies. This relaxes a host of experimental limitations related to the X-ray source and measurement sample, including collection time, minimum dopant concentration, source brilliance, and energy range. We describe the theoretical data sets and DeepONet construction and show that the resulting DeepONets produce EXAFS that recovers linear combination fits to experimental data with accuracy approaching the original ab initio calculations. We discuss the implications of our findings for minor constituent characterization and for understanding the information content of spectroscopic data more broadly, including how this approach might be applied to measured experimental spectra. To encourage similar efforts, the simulated X-ray spectra, machine learning, and fitting code are publicly available.
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Affiliation(s)
- Micah P Prange
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Niranjan Govind
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Panos Stinis
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Eugene S Ilton
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Amanda A Howard
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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3
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Loos PF, Marie A, Ammar A. Cumulant Green's function methods for molecules. Faraday Discuss 2024; 254:240-260. [PMID: 39073086 DOI: 10.1039/d4fd00037d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
The cumulant expansion of the Green's function is a computationally efficient beyond-GW approach renowned for its significant enhancement of satellite features in materials. In contrast to the ubiquitous GW approximation of many-body perturbation theory, ab initio cumulant expansions performed on top of GW (GW + C) have demonstrated the capability to handle multi-particle processes by incorporating higher-order correlation effects or vertex corrections, yielding better agreements between experiment and theory for satellite structures. While widely employed in condensed matter physics, very few applications of GW + C have been published on molecular systems. Here, we assess the performance of this scheme on a series of 10-electron molecular systems (Ne, HF, H2O, NH3, and CH4) where full configuration interaction estimates of the outer-valence quasiparticle and satellite energies are available.
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Affiliation(s)
- Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Antoine Marie
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Abdallah Ammar
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
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4
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Bylaska EJ, Panyala A, Bauman NP, Peng B, Pathak H, Mejia-Rodriguez D, Govind N, Williams-Young DB, Aprà E, Bagusetty A, Mutlu E, Jackson KA, Baruah T, Yamamoto Y, Pederson MR, Withanage KPK, Pedroza-Montero JN, Bilbrey JA, Choudhury S, Firoz J, Herman KM, Xantheas SS, Rigor P, Vila FD, Rehr JJ, Fung M, Grofe A, Johnston C, Baker N, Kaneko K, Liu H, Kowalski K. Electronic structure simulations in the cloud computing environment. J Chem Phys 2024; 161:150902. [PMID: 39431777 DOI: 10.1063/5.0226437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 09/15/2024] [Indexed: 10/22/2024] Open
Abstract
The transformative impact of modern computational paradigms and technologies, such as high-performance computing (HPC), quantum computing, and cloud computing, has opened up profound new opportunities for scientific simulations. Scalable computational chemistry is one beneficiary of this technological progress. The main focus of this paper is on the performance of various quantum chemical formulations, ranging from low-order methods to high-accuracy approaches, implemented in different computational chemistry packages and libraries, such as NWChem, NWChemEx, Scalable Predictive Methods for Excitations and Correlated Phenomena, ExaChem, and Fermi-Löwdin orbital self-interaction correction on Azure Quantum Elements, Microsoft's cloud services platform for scientific discovery. We pay particular attention to the intricate workflows for performing complex chemistry simulations, associated data curation, and mechanisms for accuracy assessment, which is demonstrated with the Arrows automated workflow for high throughput simulations. Finally, we provide a perspective on the role of cloud computing in supporting the mission of leadership computational facilities.
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Affiliation(s)
- Eric J Bylaska
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Ajay Panyala
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Nicholas P Bauman
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Bo Peng
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Himadri Pathak
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Daniel Mejia-Rodriguez
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Niranjan Govind
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - David B Williams-Young
- Applied Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Edoardo Aprà
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - Abhishek Bagusetty
- Argonne Leadership Computing Facility, Argonne National Laboratory, 9700 South Cass Avenue, Building 240, Argonne, Illinois 60439, USA
| | - Erdal Mutlu
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Koblar A Jackson
- Physics Department, Central Michigan University, Mt. Pleasant, Michigan 48859, USA
| | - Tunna Baruah
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Yoh Yamamoto
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Mark R Pederson
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | | | | | - Jenna A Bilbrey
- Artificial Intelligence and Data Analytics Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - Sutanay Choudhury
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Jesun Firoz
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Kristina M Herman
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Sotiris S Xantheas
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Paul Rigor
- Center for Cloud Computing, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Fernando D Vila
- Department of Physics, University of Washington, Seattle, Washington 98195, USA
| | - John J Rehr
- Department of Physics, University of Washington, Seattle, Washington 98195, USA
| | - Mimi Fung
- Microsoft Azure Quantum, Redmond, Washington 98052, USA
| | - Adam Grofe
- Microsoft Azure Quantum, Redmond, Washington 98052, USA
| | | | - Nathan Baker
- Microsoft Azure Quantum, Redmond, Washington 98052, USA
| | - Ken Kaneko
- Microsoft Azure Quantum, Redmond, Washington 98052, USA
| | - Hongbin Liu
- Microsoft Azure Quantum, Redmond, Washington 98052, USA
| | - Karol Kowalski
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
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5
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Ahn DH, Nakajima T, Hirao K, Song JW. Long-range Corrected Density Functional Theory Including a Two-Gaussian Hartree-Fock Operator for High Accuracy Core-excitation Energy Calculations of Both the Second- and Third-Row Atoms (LC2gau-core-BOP). J Chem Theory Comput 2024. [PMID: 39106473 DOI: 10.1021/acs.jctc.4c00651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/09/2024]
Abstract
In the previous work, LCgau-core-BOP, which includes the short-range interelectronic Gaussian attenuating Hartree-Fock (HF) exchange to the long-range HF exchange, showed high accuracy core-excitation energies from 1s orbitals of the second-row atoms (1s → π*, 1s → σ*, 1s → n*, and 1s → Rydberg), but underestimates the core-excitation energies from 1s orbitals of the third-row atoms. To improve this, we added one more Gaussian attenuating HF exchange to LCgau-core-BOP. We named it LC2gau-core-BOP, which achieves a mean absolute error (MAE) of 0.6 and 0.3 eV for core excitation energies of the second- and third-row atoms of the tested small molecules, respectively. We found that the inclusion of the short-range interelectronic HF exchange at a distance ranging from 0.2 to 0.6 a.u. contributes to the increase of performances on 1s orbital energy calculations of the second-row atoms, while the inclusion of more short-range interelectronic HF exchange at a distance ranging from 0 to 0.2 a.u. does to the increase of performance on 1s orbital energy calculations of the third-row atoms. It is notable that all of these improvements were accomplished using flexible Gaussian attenuating HF exchange inclusion. LC2gau-core-BOP shows deviations of less than 0.8 eV from experimental values for all of the core-excitation energies of the tested medium-size molecules consisting of thymine, oxazole, glycine, and dibenzothiophene sulfone. Moreover, by optimizing one parameter of the OP correlation functional, LC2gau-core-BOP provides atomization energies over the G3 test set with an accuracy comparable to that of B3LYP.
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Affiliation(s)
- Dae-Hwan Ahn
- Department of Chemistry Education, Daegu University, Gyeongsan-si 113-8656, Korea
| | | | - Kimihiko Hirao
- RIKEN Center for Computational Science, Kobe 650-0047, Japan
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8501, Japan
| | - Jong-Won Song
- Department of Chemistry Education, Daegu University, Gyeongsan-si 113-8656, Korea
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6
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Vila FD, Rehr JJ, Kowalski K, Peng B. RT-EOM-CCSD Calculations of Inner and Outer Valence Ionization Energies and Spectral Functions. J Chem Theory Comput 2024; 20:1796-1801. [PMID: 38422509 DOI: 10.1021/acs.jctc.3c01371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Photoelectron spectroscopy (PES) is a standard experimental method for material characterization, but its interpretation can be hampered by its reliance on standard materials. To facilitate the study of unknown systems, theoretical methods are desirable. Here, we present a real-time equation-of-motion coupled cluster (RT-EOM-CC) approach for valence PES, extending our core-level development. We demonstrate that RT-EOM-CC yields ionization energies and spectral functions in good agreement with experimental and CI-based results, even for some more correlated cases.
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Affiliation(s)
- Fernando D Vila
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - John J Rehr
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Karol Kowalski
- William R. Wiley Environmental Molecular Sciences Laboratory, Battelle, Pacific Northwest National Laboratory, K8-91, P.O. Box 999, Richland, Washington 99352, United States
| | - Bo Peng
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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7
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Williams-Young DB, Yuwono SH, DePrince III AE, Yang C. Approximate Exponential Integrators for Time-Dependent Equation-of-Motion Coupled Cluster Theory. J Chem Theory Comput 2023; 19:9177-9186. [PMID: 38086060 PMCID: PMC10753770 DOI: 10.1021/acs.jctc.3c00911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/09/2023] [Accepted: 10/16/2023] [Indexed: 12/27/2023]
Abstract
With a growing demand for time-domain simulations of correlated many-body systems, the development of efficient and stable integration schemes for the time-dependent Schrödinger equation is of keen interest in modern electronic structure theory. In this work, we present two approaches for the formation of the quantum propagator for time-dependent equation-of-motion coupled cluster theory based on the Chebyshev and Arnoldi expansions of the complex, nonhermitian matrix exponential, respectively. The proposed algorithms are compared with the short-iterative Lanczos method of Cooper et al. [J. Phys. Chem. A 2021 125, 5438-5447], the fourth-order Runge-Kutta method, and exact dynamics for a set of small but challenging test problems. For each of the cases studied, both of the proposed integration schemes demonstrate superior accuracy and efficiency relative to the reference simulations.
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Affiliation(s)
- David B. Williams-Young
- Applied
Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Stephen H. Yuwono
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306, United States
| | - A. Eugene DePrince III
- Department
of Chemistry and Biochemistry, Florida State
University, Tallahassee, Florida 32306, United States
| | - Chao Yang
- Applied
Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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8
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Peyton BG, Wang Z, Crawford TD. Reduced Scaling Real-Time Coupled Cluster Theory. J Phys Chem A 2023; 127:8486-8499. [PMID: 37782945 DOI: 10.1021/acs.jpca.3c05151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
Real-time coupled cluster (CC) methods have several advantages over their frequency-domain counterparts, namely, response and equation of motion CC theories. Broadband spectra, strong fields, and pulse manipulation allow for the simulation of complex spectroscopies that are unreachable using frequency-domain approaches. Due to the high-order polynomial scaling, the required numerical time propagation of the CC residual expressions is a computationally demanding process. This scaling may be reduced by local correlation schemes, which aim to reduce the size of the (virtual) orbital space by truncation according to user-defined parameters. We present the first application of local correlation to real-time CC. As in previous studies of locally correlated frequency-domain CC, traditional local correlation schemes are of limited utility for field-dependent properties; however, a perturbation-aware scheme proves promising. A detailed analysis of the amplitude dynamics suggests that the main challenge is a strong time dependence of the wave function sparsity.
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Affiliation(s)
- Benjamin G Peyton
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Zhe Wang
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - T Daniel Crawford
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
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