1
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Choudhury UM, Mendhekar KL, Kunwar AC, Mohapatra DK. Total Synthesis and Determination of Absolute Configuration of Cryptorigidifoliol G. J Org Chem 2024; 89:5219-5228. [PMID: 36480814 DOI: 10.1021/acs.joc.2c02398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The first asymmetric total synthesis of (1S,5R,7S)-cryptorigidifoliol G and (1S,5R,7R)-cryptorigidifoliol G of the proposed natural product was achieved. The key steps in the synthesis involved Keck-Maruoka allylation, our own developed protocol for the construction of the trans-2,6-disubstituted dihydropyran, iodolactonization, cross-metathesis, Prins cyclization, and cis-Wittig olefination reaction. A comparison of the NMR as well as analytical data and thorough analysis of the 2D NMR suggested that the absolute stereochemistry of the proposed natural product is (1S,5R,7S)-cryptorigidifoliol G.
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Affiliation(s)
- Utkal Mani Choudhury
- Department of Organic Synthesis and Process Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Kishor L Mendhekar
- Department of Organic Synthesis and Process Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Ajit C Kunwar
- Centre for NMR and Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Debendra K Mohapatra
- Department of Organic Synthesis and Process Chemistry, CSIR-Indian Institute of Chemical Technology, Hyderabad 500007, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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2
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Kundeti LSR, Chinnam VV, Sharada A, Sarma AVS, Kommu N, Yadav JS. Domino Intramolecular Ring‐Closing Metathesis/Cross‐Metathesis Reaction: Total Synthesis of Putative Structure of Cryptopyranmoscatone A2. ChemistrySelect 2022. [DOI: 10.1002/slct.202202806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Affiliation(s)
- Lakshmi Srinivasa Rao Kundeti
- Centre for Natural Products Chemistry Division CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
| | - Vijaya Vardhan Chinnam
- Centre for Natural Products Chemistry Division CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
- Government Degree College, K. Perumallapuram East Godavari 533449 Andhra Pradesh India
| | - Ambati Sharada
- Centre for Natural Products Chemistry Division CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
| | - Akella Venkata Subrahmanya Sarma
- Department of Analytical & Structural Chemistry CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
| | - Nagaiah Kommu
- Centre for Natural Products Chemistry Division CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
| | - Jhillu Singh Yadav
- Centre for Natural Products Chemistry Division CSIR-Indian Institute of Chemical Technology, Tarnaka Hyderabad 500007 Telangana India
- School of Science Indrashil University, Kadi Mehsana 382740 Gujarat India
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3
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Kanikarapu S, Gogoi MP, Dutta S, Sahoo AK. A 6- endo-dig Thiolative Cyclization of Yne-Ynamides: Access to Thiodihydropyridin-2-ones. Org Lett 2022; 24:8289-8294. [DOI: 10.1021/acs.orglett.2c03225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Suresh Kanikarapu
- School of Chemistry, University of Hyderabad, Hyderabad, India 500046
| | | | - Shubham Dutta
- School of Chemistry, University of Hyderabad, Hyderabad, India 500046
| | - Akhila K. Sahoo
- School of Chemistry, University of Hyderabad, Hyderabad, India 500046
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4
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Thiraporn A, Iawsipo P, Tadpetch K. Total synthesis and cytotoxic activity of 7-O-methylnigrosporolide and pestalotioprolide D. Synlett 2022. [DOI: 10.1055/a-1792-8402] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
A convergent total synthesis of 7-O-methylnigrosporolide and pestalotioprolide D has been accomplished in 17 longest linear steps starting with 1.7% and 2.6% overall yields, respectively, starting from (S)-propylene oxide and known (S)-benzyl glycidyl ether. Our synthesis exploited acetylide addition and Shiina macrolactonization to assemble the macrocycle, Lindlar reduction, Wittig and Still–Gennari olefination to construct the three olefins as well as a Jacobsen hydrolytic kinetic resolution to install the stereogenic center. The selection of silyl protecting group of C-4 alcohol was crucial for final deprotection step. Our synthesis also led to a hypothesis that pestalotioprolide D could be an artifact of 7-O-methylnigrosporolide. Cytotoxic activity of both synthetic compounds against six human cancer cell lines was evaluated. Synthetic pestalotioprolide D showed more potent cytotoxic activity against all cancer cell lines tested than 7-O-methylnigrosporolide, and the SiHa cervical cancer cell line was the most sensitive cell to both synthetic compounds.
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Affiliation(s)
- Aticha Thiraporn
- Division of Physical Science, Prince of Songkla University, Hat Yai, Thailand
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5
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Nakashima KI, Higuchi Y, Tomida J, Kawamura Y, Inoue M. Two new ɑ-pyrone derivatives from the endophytic Diaporthe sp. ECN371. J Nat Med 2022; 76:462-467. [PMID: 34981405 DOI: 10.1007/s11418-021-01586-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 11/14/2021] [Indexed: 11/27/2022]
Abstract
Diaportholides A (1) and B (2), two polyketides with ɑ-pyrone moieties, were isolated from the cultures of an endophytic Diaporthe sp. ECN371 isolated from Orixa japonica, together with four known polyketides, phomopsolide B (3), phomopsolidones A (4) and B (5), and 5-[(1R)-1-hydroxyethyl]-γ-oxo-2-furanbutanoic acid (6). The structures of 1 and 2 were determined by extensive analysis of NMR and MS spectroscopic data. Furthermore, the structure of 2 was confirmed by analyzing the single-crystal X-ray diffraction data. The luciferase reporter gene assay revealed that among all isolated compounds (1-6), 3, a known ɑ-pyrone derivative, exhibited agonistic activity against the peroxisome proliferator-activated receptor ɑ, which is an important regulator of lipid metabolism in humans.
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Affiliation(s)
- Ken-Ichi Nakashima
- Laboratory of Medicinal Resources, School of Pharmacy, Aichi Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi, 464-8650, Japan.
| | - Yuka Higuchi
- Laboratory of Medicinal Resources, School of Pharmacy, Aichi Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi, 464-8650, Japan
| | - Junko Tomida
- Department of Microbiology, School of Pharmacy, Aichi Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi, 464-8650, Japan
| | - Yoshiaki Kawamura
- Department of Microbiology, School of Pharmacy, Aichi Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi, 464-8650, Japan
| | - Makoto Inoue
- Laboratory of Medicinal Resources, School of Pharmacy, Aichi Gakuin University, 1-100 Kusumoto-cho, Chikusa-ku, Nagoya, Aichi, 464-8650, Japan
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6
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Sahoo AK, Rangu P, Suresh K, Dutta S, Vangara S. Metal-Free Stereoselective Addition of Propiolic acids to Ynamides: A Concise Synthetic Route to Highly Substituted Ene-Diyne/Dienyne-( E)- N,O-Acetals. NEW J CHEM 2022. [DOI: 10.1039/d2nj01907h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A straight forward and sustainable approach for 1,2-addition of propiolic acids to ynamide has led to bench stable sp2 (E)-enol-enamides of enediynes & dienynes. The reaction is chemo, regio, as...
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7
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Sarotti AM. In Silico Reassignment of (+)-Diplopyrone by NMR Calculations: Use of a DP4/J-DP4/DP4+/DIP Tandem to Revise Both Relative and Absolute Configuration. J Org Chem 2020; 85:11566-11570. [DOI: 10.1021/acs.joc.0c01563] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ariel M. Sarotti
- Instituto de Quı́mica Rosario (CONICET), Facultad de Ciencias Bioquı́micas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000 Rosario, Argentina
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8
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Janicki I, Kiełbasiński P. Still–Gennari Olefination and its Applications in Organic Synthesis. Adv Synth Catal 2020. [DOI: 10.1002/adsc.201901591] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Ignacy Janicki
- Division of Organic ChemistryCentre of Molecular and Macromolecular Studies, Polish Academy of Sciences Sienkiewicza 112 90-363 Łódź Poland
| | - Piotr Kiełbasiński
- Division of Organic ChemistryCentre of Molecular and Macromolecular Studies, Polish Academy of Sciences Sienkiewicza 112 90-363 Łódź Poland
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9
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Polavarapu PL, Santoro E. Vibrational optical activity for structural characterization of natural products. Nat Prod Rep 2020; 37:1661-1699. [DOI: 10.1039/d0np00025f] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review presents the recent progress towards elucidating the structures of chiral natural products and applications using vibrational optical activity (VOA) spectroscopy.
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10
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Fusè M, Mazzeo G, Longhi G, Abbate S, Masi M, Evidente A, Puzzarini C, Barone V. Unbiased Determination of Absolute Configurations by vis-à-vis Comparison of Experimental and Simulated Spectra: The Challenging Case of Diplopyrone. J Phys Chem B 2019; 123:9230-9237. [PMID: 31580674 DOI: 10.1021/acs.jpcb.9b08375] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
A new experimental-computational strategy for the determination of the absolute configuration (AC) of complex chiral molecules is proposed by combining diverse experimental spectroscopies with quantum-mechanical simulations well beyond the current computational practice. Key features are the conformer search and relative stability evaluation performed by a new stochastic two-level tool followed by a vis-à-vis comparison of experimental and computed spectra without any ad hoc adjustment. The entire computational procedure is embedded in the user-friendly VMS software, and its reliability is granted by the inclusion of mechanic/electric/magnetic anharmonicity as well as ro-vibrational and vibronic couplings by means of generalized perturbation theory in conjunction with double-hybrid functionals combined with empirical dispersion contributions and suitable basis sets. To test and validate the new approach, the puzzling case of diplopyrone, a fungal phytotoxic metabolite, has been chosen: the close match between new experimental and simulated infrared absorption and vibrational circular dichroism spectra has led to the unbiased evaluation of its AC.
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Affiliation(s)
- Marco Fusè
- Scuola Normale Superiore , Piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Giuseppe Mazzeo
- Dipartimento di Medicina Molecolare e Traslazionale , Università di Brescia , Viale Europa 11 , 25123 Brescia , Italy
| | - Giovanna Longhi
- Dipartimento di Medicina Molecolare e Traslazionale , Università di Brescia , Viale Europa 11 , 25123 Brescia , Italy.,Consiglio Nazionale delle Ricerche-I.N.O. c/o CSMT , via Branze, 45 - 25123 Brescia , Italy
| | - Sergio Abbate
- Dipartimento di Medicina Molecolare e Traslazionale , Università di Brescia , Viale Europa 11 , 25123 Brescia , Italy.,Consiglio Nazionale delle Ricerche-I.N.O. c/o CSMT , via Branze, 45 - 25123 Brescia , Italy
| | - Marco Masi
- Dipartimento di Scienze Chimiche , Università di Napoli Federico II , Complesso Universitario Monte S. Angelo, Via Cintia 4 , 80126 Napoli , Italy
| | - Antonio Evidente
- Dipartimento di Scienze Chimiche , Università di Napoli Federico II , Complesso Universitario Monte S. Angelo, Via Cintia 4 , 80126 Napoli , Italy
| | - Cristina Puzzarini
- Dipartimento di Chimica "Giacomo Ciamician" , Università di Bologna , Via Selmi 2 , I-40126 Bologna , Italy
| | - Vincenzo Barone
- Scuola Normale Superiore , Piazza dei Cavalieri 7 , I-56126 Pisa , Italy
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11
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Paulsen B, Fredriksen KA, Petersen D, Maes L, Matheeussen A, Naemi AO, Scheie AA, Simm R, Ma R, Wan B, Franzblau S, Gundersen LL. Synthesis and antimicrobial activities of N 6-hydroxyagelasine analogs and revision of the structure of ageloximes. Bioorg Med Chem 2019; 27:620-629. [PMID: 30638761 DOI: 10.1016/j.bmc.2019.01.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Revised: 12/20/2018] [Accepted: 01/03/2019] [Indexed: 12/14/2022]
Abstract
(+)-N6-Hydroxyagelasine D, the enantiomer of the proposed structure of (-)-ageloxime D, as well as N6-hydroxyagelasine analogs were synthesized by selective N-7 alkylation of N6-[tert-butyl(dimethyl)silyloxy]-9-methyl-9H-purin-6-amine in order to install the terpenoid side chain, followed by fluoride mediated removal of the TBDMS-protecting group. N6-Hydroxyagelasine D and the analog carrying a geranylgeranyl side chain displayed profound antimicrobial activities against several pathogenic bacteria and protozoa and inhibited bacterial biofilm formation. However these compounds were also toxic towards mammalian fibroblast cells (MRC-5). The spectral data of N6-hydroxyagelasine D did not match those reported for ageloxime D before. Hence, a revised structure of ageloxime D was proposed. Basic hydrolysis of agelasine D gave (+)-N-[4-amino-6-(methylamino)pyrimidin-5-yl]-N-copalylformamide, a compound with spectral data in full agreement with those reported for (-)-ageloxime D.
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Affiliation(s)
- Britt Paulsen
- Department of Chemistry, University of Oslo, P.O.Box 1033, Blindern, 0315 Oslo, Norway
| | - Kim Alex Fredriksen
- Department of Chemistry, University of Oslo, P.O.Box 1033, Blindern, 0315 Oslo, Norway
| | - Dirk Petersen
- Department of Chemistry, University of Oslo, P.O.Box 1033, Blindern, 0315 Oslo, Norway
| | - Louis Maes
- Laboratory of Microbiology, Parasitology and Hygiene (LMPH), University of Antwerp, Wilrijk, Belgium
| | - An Matheeussen
- Laboratory of Microbiology, Parasitology and Hygiene (LMPH), University of Antwerp, Wilrijk, Belgium
| | - Ali-Oddin Naemi
- Institute of Oral Biology, University of Oslo, P.O. Box 1052, Blindern, 0316 Oslo, Norway
| | - Anne Aamdal Scheie
- Institute of Oral Biology, University of Oslo, P.O. Box 1052, Blindern, 0316 Oslo, Norway
| | - Roger Simm
- Institute of Oral Biology, University of Oslo, P.O. Box 1052, Blindern, 0316 Oslo, Norway
| | - Rui Ma
- Institute for Tuberculosis Research, University of Illinois at Chicago, 833 S. Wood St., Chicago, IL, USA
| | - Baojie Wan
- Institute for Tuberculosis Research, University of Illinois at Chicago, 833 S. Wood St., Chicago, IL, USA
| | - Scott Franzblau
- Institute for Tuberculosis Research, University of Illinois at Chicago, 833 S. Wood St., Chicago, IL, USA
| | - Lise-Lotte Gundersen
- Department of Chemistry, University of Oslo, P.O.Box 1033, Blindern, 0315 Oslo, Norway.
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12
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Lazzara NC, Rosano RJ, Vagadia PP, Giovine MT, Bezpalko MW, Piro NA, Kassel WS, Boyko WJ, Zubris DL, Schrader KK, Wedge DE, Duke SO, Giuliano RM. Synthesis and Biological Evaluation of 6-[(1R)-1-Hydroxyethyl]-2,4a(R),6(S),8a(R)-tetrahydropyrano-[3,2-b]-pyran-2-one and Structural Analogues of the Putative Structure of Diplopyrone. J Org Chem 2018; 84:666-678. [DOI: 10.1021/acs.joc.8b02490] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicholas C. Lazzara
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Robert J. Rosano
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Purav P. Vagadia
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Matthew T. Giovine
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Mark W. Bezpalko
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Nicholas A. Piro
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Wm. Scott Kassel
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Walter J. Boyko
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Deanna L. Zubris
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
| | - Kevin K. Schrader
- Natural Products Utilization Research Unit, Agricultural Research Service, U.S. Department of Agriculture, P.O. Box 1848, University, Mississippi 38677, United States
| | - David E. Wedge
- Natural Products Utilization Research Unit, Agricultural Research Service, U.S. Department of Agriculture, P.O. Box 1848, University, Mississippi 38677, United States
| | - Stephen O. Duke
- Natural Products Utilization Research Unit, Agricultural Research Service, U.S. Department of Agriculture, P.O. Box 1848, University, Mississippi 38677, United States
| | - Robert M. Giuliano
- Department of Chemistry, Villanova University, Villanova, Pennsylvania 19085, United States
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13
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Pradhan TR, Mohapatra DK. A synthetic study toward the core structure of (-)-apicularen A. Org Biomol Chem 2018; 16:8810-8818. [PMID: 30403225 DOI: 10.1039/c8ob02301h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A concise synthetic strategy towards the core structure of (-)-apicularen A has been described in an 11-step synthetic sequence from a known intermediate. The key steps include tandem isomerization followed by C-O and C-C bond-forming reactions and iodocyclization strategies for the synthesis of a bicyclic ether embedded in the macrolactone ring. The applied reagent-controlled Keck-Maruoka allylation, Lin Pu alkynylation and Ricket-Diels-Alder reactions were used to simplify the synthetic sequence of related natural products. An intramolecular Yamaguchi lactonization constructed the macrolactone core, while the attempt to install the C11 hydroxyl chiral centre either under catalytic hydrogenation conditions or oxidative conditions was not successful.
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Affiliation(s)
- Tapas R Pradhan
- Organic Synthesis and Process Chemistry Division, CSIR-Indian Institute of Chemical Technology, Hyderabad-500007, India.
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14
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Pu Q, Tang X, Gao L, Song Z. Three-component reaction to synthesize E-vinyl silyl anti-1,2-diols via sequential [1,4]-O-to-O/[1,4]-C-to-O silyl migrations. Org Chem Front 2018. [DOI: 10.1039/c8qo00332g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A three-component reaction of geminal bis(silyl) allyl silyl ether, aldehyde and electrophile has been developed to synthesize trisubstituted E-vinyl silyl anti-1,2-diols. The approach features a sequential [1,4]-O-to-O/[1,4]-C-to-O silyl migrations process.
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Affiliation(s)
- Qiang Pu
- Sichuan Engineering Laboratory for Plant-Sourced Drug and Research Center for Drug Industrial Technology
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry
- West China School of Pharmacy
- Sichuan University
- Chengdu
| | - Xiaoxiao Tang
- Sichuan Engineering Laboratory for Plant-Sourced Drug and Research Center for Drug Industrial Technology
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry
- West China School of Pharmacy
- Sichuan University
- Chengdu
| | - Lu Gao
- Sichuan Engineering Laboratory for Plant-Sourced Drug and Research Center for Drug Industrial Technology
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry
- West China School of Pharmacy
- Sichuan University
- Chengdu
| | - Zhenlei Song
- Sichuan Engineering Laboratory for Plant-Sourced Drug and Research Center for Drug Industrial Technology
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Education Ministry
- West China School of Pharmacy
- Sichuan University
- Chengdu
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