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New macrocycles based on pyrazole-tetrazole subunit: synthesis, characterization and their complexing properties toward heavy metal cations. J INCL PHENOM MACRO 2023. [DOI: 10.1007/s10847-023-01177-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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2
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Niedbała P, Ceborska M, Mehmet M, Ignacak W, Jurczak J, Dąbrowa K. Anion Recognition by a Pincer-Type Host Constructed from Two Polyamide Macrocyclic Frameworks Jointed by a Photo-Addressable Azobenzene Switch. MATERIALS (BASEL, SWITZERLAND) 2022; 15:692. [PMID: 35057408 PMCID: PMC8777895 DOI: 10.3390/ma15020692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 01/04/2022] [Accepted: 01/10/2022] [Indexed: 12/10/2022]
Abstract
A sterically crowded light-responsive host 1 was synthetized with a 93% yield by applying a post-functionalization protocol utilizing the double amidation of 4,4'-azodibenzoyl dichloride with a readily available 26-membered macrocyclic amine. X-ray structures of two hydrates of trans-1 demonstrate a very different alignment of the azobenzene linkage, which is involved in T-shape or parallel-displaced π⋯π stacking interactions with the pyridine-2,6-dicarboxamide moieties from the macrocyclic backbone. Despite the rigidity of the macrocyclic framework, which generates a large steric hindrance around the azobenzene chromophore, the host 1 retains the ability to undergo a reversible cis⟷trans isomerization upon irradiation with UVA (368 nm) and blue (410 nm) light. Moreover, thermal cis→trans back-isomerization (ΔG0 = 106.5 kJ∙mol-1, t½ = 141 h) is markedly slowed down as compared to the non-macrocyclic analog. 1H NMR titration experiments in DMSO-d6/0.5% water solution reveal that trans-1 exhibits a strong preference for dihydrogenphosphate (H2PO4-) over other anions (Cl-, MeCO2-, and PhCO2-), whereas the photogenerated metastable cis-1 shows lower affinity for the H2PO4- anion.
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Affiliation(s)
- Patryk Niedbała
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Magdalena Ceborska
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland;
| | - Mart Mehmet
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Wiktor Ignacak
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
| | - Kajetan Dąbrowa
- Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Poland; (P.N.); (M.M.); (W.I.)
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Stabilization of Near Identical Hydrogen Bonded Octameric Water Clusters in Crystal Structures of Three Distinct Non-Charged Polyamide Macrocyclic Host Molecules. Molecules 2021; 26:molecules26092787. [PMID: 34065060 PMCID: PMC8125911 DOI: 10.3390/molecules26092787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 04/27/2021] [Accepted: 05/06/2021] [Indexed: 11/16/2022] Open
Abstract
In this paper, we present a comparative analysis of the solid state structures of three well-resolved hydrates of macrocyclic host molecules 1a, 1b, and 2 containing an intrannular amide-aryl substituent (lariat arm) connected to a fixed 26-membered ring in a normal (-NHCOAr, hosts 1a and 1b) or reverse manner (-CONHAr, host 2). Despite different chemical structures, these hosts crystallize as isostructural tetrahydrates in the same P-1 space group. Moreover, their crystals exhibit identical hydrogen bond motifs resulting in a stabilization of an almost identical unusual octameric water cluster built from the cyclic tetramer core and four water molecules, attached sequentially in an "up-and-down" manner. Further analysis reveals that, among the series, the structure of host 2 provides the most suitable environment for the accommodation of this type of water cluster.
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Niedbała P, Jurczak J. A new class of “pincer” receptors – macrocyclic systems containing an incorporated amide group. J COORD CHEM 2020. [DOI: 10.1080/00958972.2020.1867313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Patryk Niedbała
- Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland
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5
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Effective synthetic strategy towards highly selective macrocyclic anion receptors based on static combinatorial chemistry. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131693] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Dąbrowa K, Niedbała P, Pawlak M, Lindner M, Ignacak W, Jurczak J. Tuning Anion-Binding Properties of 22-Membered Unclosed Cryptands by Structural Modification of the Lariat Arm. ACS OMEGA 2020; 5:29601-29608. [PMID: 33225192 PMCID: PMC7676298 DOI: 10.1021/acsomega.0c04660] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 10/21/2020] [Indexed: 05/03/2023]
Abstract
A series of 22-membered unclosed cryptands end-capped with intra-annular methyl (1), phenyl (2), p-tert-butylphenyl (3), and p-nitrophenyl (4) amide substituents (lariat arm) were synthesized to elucidate the effect of steric and electronic factors on their anion recognition behavior. The 1H NMR titrations in DMSO-d 6 with 0.5% water reveal enhanced selectivity for H2PO4 - vs Cl- and PhCO2 -. The para-attachment of the electron-withdrawing nitro group (-NO2 vs -H and -t-Bu) was found to increase anion-binding affinity, whereas the steric bulkiness of lariat arm (methyl vs aryl) has a marginal effect. DFT calculations reveal that binding of H2PO4 - is associated with minimal conformational change in the lariat arm moiety and involve four hydrogen bond acceptor and one donor sites of host.
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Niedbała P, Jurczak J. One-Pot Parallel Synthesis of Unclosed Cryptands-Searching for Selective Anion Receptors via Static Combinatorial Chemistry Techniques. ACS OMEGA 2020; 5:26271-26277. [PMID: 33073154 PMCID: PMC7558039 DOI: 10.1021/acsomega.0c04228] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 09/16/2020] [Indexed: 05/04/2023]
Abstract
We present the synthesis of 17 macrocyclic compounds having the structure of so-called unclosed cryptands, acting as anion receptors. These compounds possess amide functions playing the role of hydrogen-bond-donating systems. We have synthesized the presented compounds both by standard methods (using batch conditions) and by static combinatorial chemistry methods, using tetrabutylammonium dihydrogen phosphate as a template, promoting the lariat arm postfunctionalization reaction.
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Niedbała P, Majdecki M, Dąbrowa K, Jurczak J. Selective Carboxylate Recognition Using Urea-Functionalized Unclosed Cryptands: Mild Synthesis and Complexation Studies. J Org Chem 2020; 85:5058-5064. [PMID: 32142280 PMCID: PMC7497646 DOI: 10.1021/acs.joc.9b03082] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
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Herein we present
the synthesis and evaluation of anion-binding
properties of 12 new receptors from the unclosed cryptand family.
Their core is built on the stable 26-membered tetraamidic macrocyclic
scaffold, whereas various alkyl and aryl urea substituents were introduced
after a yield-limiting macrocyclization step (65–98%). The
receptors strongly bind anions, in particular carboxylates, even in
a highly competitive solvent mixture (DMSO-d6 + H2O 95:5 v/v).
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Affiliation(s)
- Patryk Niedbała
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Maciej Majdecki
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Kajetan Dąbrowa
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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Esteve F, Altava B, Bolte M, Burguete MI, García-Verdugo E, Luis SV. Highly Selective Anion Template Effect in the Synthesis of Constrained Pseudopeptidic Macrocyclic Cyclophanes. J Org Chem 2020; 85:1138-1145. [PMID: 31858803 DOI: 10.1021/acs.joc.9b03048] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Herein, we report the synthesis of a novel family of constrained pseudopeptidic macrocyclic compounds containing the hexahydropyrrolo[3,4-f]isoindolocyclophane scaffold and involving four coupled substitution reactions in the macrocyclization process. Although the increase in the number of steps involved in the macrocyclization could lead to a larger number of possible side products, the optimization of the methodology and the study of the driving forces have made it possible to obtain the desired macrocycles in excellent yields. A thorough computational study has been carried out to understand the macrocyclization process, and the results obtained nicely agree with experimental data. Moreover, the bromide anion had a clear catalytic template effect in the macrocyclization reaction, and surprisingly, the chloride anion had a negative template effect in opposition to the results obtained for analogous macrocycles. The parameters responsible for the specific kinetic template effect observed have been studied in detail.
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Affiliation(s)
- Ferran Esteve
- Departamento de Química Inorgánica y Orgánica , Universitat JaumeI , Av. Sos Baynat s/n , 12071 Castellón , Spain
| | - Belen Altava
- Departamento de Química Inorgánica y Orgánica , Universitat JaumeI , Av. Sos Baynat s/n , 12071 Castellón , Spain
| | - Michael Bolte
- Institut fur Anorganische Chemie , J. W. Goethe-Universitat Frankfurt , 60438 Frankfurt/Main , Germany
| | - M Isabel Burguete
- Departamento de Química Inorgánica y Orgánica , Universitat JaumeI , Av. Sos Baynat s/n , 12071 Castellón , Spain
| | - Eduardo García-Verdugo
- Departamento de Química Inorgánica y Orgánica , Universitat JaumeI , Av. Sos Baynat s/n , 12071 Castellón , Spain
| | - Santiago V Luis
- Departamento de Química Inorgánica y Orgánica , Universitat JaumeI , Av. Sos Baynat s/n , 12071 Castellón , Spain
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Tyszka-Gumkowska A, Jurczak J. A General Method for High-Pressure-Promoted Postfunctionalization of Unclosed Cryptands: Potential Phase-Transfer Catalysts. J Org Chem 2019; 85:1308-1314. [PMID: 31825217 DOI: 10.1021/acs.joc.9b02985] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report a high-pressure approach to facile late-stage functionalization of unclosed cryptands (UCs) (11 examples, yield up to 99%). Direct comparison of classic and high-pressure conditions of the quaternization reaction in a sterically crowded intraannular position is investigated, and differences in the reactivity of tertiary amine substrates are discussed. Finally, we demonstrated the application of UCs as catalysts for synthetically important alkylation reactions under phase-transfer conditions.
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Affiliation(s)
- Agata Tyszka-Gumkowska
- Institute of Organic Chemistry Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
| | - Janusz Jurczak
- Institute of Organic Chemistry Polish Academy of Sciences , Kasprzaka 44/52 , 01-224 Warsaw , Poland
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11
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Tyszka A, Pikus G, Dąbrowa K, Jurczak J. Late-Stage Functionalization of (R)-BINOL-Based Diazacoronands and Their Chiral Recognition of α-Phenylethylamine Hydrochlorides. J Org Chem 2019; 84:6502-6507. [DOI: 10.1021/acs.joc.9b00630] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Agata Tyszka
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
| | - Grzegorz Pikus
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
| | - Kajetan Dąbrowa
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
| | - Janusz Jurczak
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland
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