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Shibuya R, Kajimoto S, Yaginuma H, Ariyoshi T, Okada Y, Nakabayashi T. Nucleic Acid-Rich Stress Granules Are Not Merely Crowded Condensates: A Quantitative Raman Imaging Study. Anal Chem 2024; 96:17078-17085. [PMID: 39405087 PMCID: PMC11525929 DOI: 10.1021/acs.analchem.4c01096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 09/25/2024] [Accepted: 10/04/2024] [Indexed: 10/30/2024]
Abstract
Liquid droplets, formed by intracellular liquid-liquid phase separation (LLPS), are called membraneless organelles. They provide transient enzymatic reaction fields for maintaining cellular homeostasis, although they might transform into aggregates, leading to neurodegenerative diseases. To understand the nature of intracellular droplets, it is crucial to quantify the liquid droplets inside a living cell as well as to elucidate the underlying biological mechanism. In this study, we performed near-infrared fluorescence and Raman imaging to quantify chemical components inside stress granules (SGs) formed by LLPS in living cells. The Raman images reveal that the nucleic acid concentration inside the SGs was more than 20% higher than the surrounding cytoplasm, whereas the lipid concentration was lower. Quantitative Raman intensity analysis using a water Raman band as an internal standard enables in situ concentration determination of nucleic acids in the SGs and other organelles. The intensity of the biomolecular C-H bands relative to the water band indicates that the crowding environment inside the SGs depends on the stress type; under oxidative stress, the inside of the SGs was nearly identical to the outside, whereas it was sparser in hyperosmotic stressed cells, suggesting that the high concentrations of nucleic acids play a pivotal role in maintaining the environments inside the SGs. These results demonstrate that intracellular droplets are not always highly condensed.
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Affiliation(s)
- Ren Shibuya
- Graduate
School of Pharmaceutical Sciences, Tohoku
University, Aoba-ku, Sendai 980-8578, Japan
| | - Shinji Kajimoto
- Graduate
School of Pharmaceutical Sciences, Tohoku
University, Aoba-ku, Sendai 980-8578, Japan
- JST
PRESTO, Kawaguchi, Saitama 332-0012, Japan
| | - Hideyuki Yaginuma
- Department
of Cell Biology and Physics, Universal Biology Institute and International
Research Center for Neurointelligence, The
University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
- Laboratory
for Cell Polarity Regulation, RIKEN Center
for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan
| | - Tetsuro Ariyoshi
- Department
of Cell Biology and Physics, Universal Biology Institute and International
Research Center for Neurointelligence, The
University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
- Laboratory
for Cell Polarity Regulation, RIKEN Center
for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan
| | - Yasushi Okada
- Department
of Cell Biology and Physics, Universal Biology Institute and International
Research Center for Neurointelligence, The
University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
- Laboratory
for Cell Polarity Regulation, RIKEN Center
for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan
| | - Takakazu Nakabayashi
- Graduate
School of Pharmaceutical Sciences, Tohoku
University, Aoba-ku, Sendai 980-8578, Japan
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Dunnington EL, Wong BS, Fu D. Innovative Approaches for Drug Discovery: Quantifying Drug Distribution and Response with Raman Imaging. Anal Chem 2024; 96:7926-7944. [PMID: 38625100 PMCID: PMC11108735 DOI: 10.1021/acs.analchem.4c01413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Affiliation(s)
| | | | - Dan Fu
- Department of Chemistry, University of Washington, Seattle, WA, 98195, USA
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