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For: Son CY, McDaniel JG, Cui Q, Yethiraj A. Proper Thermal Equilibration of Simulations with Drude Polarizable Models: Temperature-Grouped Dual-Nosé-Hoover Thermostat. J Phys Chem Lett 2019;10:7523-7530. [PMID: 31722528 DOI: 10.1021/acs.jpclett.9b02983] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Number Cited by Other Article(s)
1
Otero-Lema M, Lois-Cuns R, Boado MA, Montes-Campos H, Méndez-Morales T, Varela LM. KUTE: Green-Kubo Uncertainty-Based Transport Coefficient Estimator. J Chem Inf Model 2025;65:3477-3487. [PMID: 40105208 DOI: 10.1021/acs.jcim.4c02219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2025]
2
Frömbgen T, Zaby P, Alizadeh V, Da Silva JLF, Kirchner B, Lourenço TC. Lessons Learned on Obtaining Reliable Dynamic Properties for Ionic Liquids. Chemphyschem 2025;26:e202401048. [PMID: 39887879 PMCID: PMC12005134 DOI: 10.1002/cphc.202401048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2024] [Revised: 01/17/2025] [Accepted: 01/29/2025] [Indexed: 02/01/2025]
3
Ma L, Jiang J. Vehicular Motions Dominate the Ion Transport in Concentrated LiTFSI Aqueous Solutions? J Phys Chem Lett 2024;15:4531-4537. [PMID: 38635898 DOI: 10.1021/acs.jpclett.4c00791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
4
Wang N, Maginn EJ. GAFF-Based Polarizable Force Field Development and Validation for Ionic Liquids. J Phys Chem B 2024;128:871-881. [PMID: 38227791 DOI: 10.1021/acs.jpcb.3c07238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
5
Ma L, Zhong Z, Hu J, Qing L, Jiang J. Long-Lived Weak Ion Pairs in Ionic Liquids: An Insight from All-Atom Molecular Dynamics Simulations. J Phys Chem B 2023. [PMID: 37262343 DOI: 10.1021/acs.jpcb.3c01559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
6
Dodin A, Geissler PL. Symmetrized Drude Oscillator Force Fields Improve Numerical Performance of Polarizable Molecular Dynamics. J Chem Theory Comput 2023;19:2906-2917. [PMID: 37130215 DOI: 10.1021/acs.jctc.3c00278] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
7
Clark R, Ávila J, Costa Gomes M, Padua AAH. Solvation Environments in Porous Ionic Liquids Determine Selectivity in CO2 Conversion to Cyclic Carbonates. J Phys Chem B 2023;127:3266-3277. [PMID: 37011369 DOI: 10.1021/acs.jpcb.2c08788] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
8
Singh A, Mason TG, Lu Z, Hill AJ, Pas SJ, Teo BM, Freeman BD, Izgorodina EI. Structural elucidation of polydopamine facilitated by ionic liquid solvation. Phys Chem Chem Phys 2023;25:14700-14710. [PMID: 36806848 DOI: 10.1039/d2cp05439f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
9
Joerg F, Wieder M, Schröder C. Protex-A Python utility for proton exchange in molecular dynamics simulations. Front Chem 2023;11:1140896. [PMID: 36874061 PMCID: PMC9981665 DOI: 10.3389/fchem.2023.1140896] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 02/06/2023] [Indexed: 02/19/2023]  Open
10
Chen S, Voth GA. How Does Electronic Polarizability or Scaled-Charge Affect the Interfacial Properties of Room Temperature Ionic Liquids? J Phys Chem B 2023;127:1264-1275. [PMID: 36701801 PMCID: PMC9924258 DOI: 10.1021/acs.jpcb.2c07981] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 01/01/2023] [Indexed: 01/27/2023]
11
Balzer C, Frischknecht AL. Explicit Polarization in Coarse-Grained Simulations of Ionomer Melts. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
12
Reis GSA, de Souza RM, Ribeiro MCC. Molecular Dynamics Simulation Study of the Far-Infrared Spectrum of a Deep Eutectic Solvent. J Phys Chem B 2022;126:5695-5705. [PMID: 35858287 DOI: 10.1021/acs.jpcb.2c03277] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
13
Joerg F, Schröder C. Polarizable molecular dynamics simulations on the conductivity of pure 1-methylimidazolium acetate systems. Phys Chem Chem Phys 2022;24:15245-15254. [PMID: 35703101 DOI: 10.1039/d2cp01501c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
14
Szabadi A, Schröder C. Recent Developments in Polarizable Molecular Dynamics Simulations of Electrolyte Solutions. JOURNAL OF COMPUTATIONAL BIOPHYSICS AND CHEMISTRY 2022. [DOI: 10.1142/s2737416521420035] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
15
Guan Y, Clark R, Philippi F, Zhang X, Welton T. How do external forces related to mass and charge affect the structures and dynamics of an ionic liquid?. J Chem Phys 2022;156:204312. [DOI: 10.1063/5.0091322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Zhang Z, Zofchak E, Krajniak J, Ganesan V. Influence of Polarizability on the Structure, Dynamic Characteristics, and Ion-Transport Mechanisms in Polymeric Ionic Liquids. J Phys Chem B 2022;126:2583-2592. [DOI: 10.1021/acs.jpcb.1c10662] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Koutsoukos S, Philippi F, Rauber D, Pugh D, Kay CWM, Welton T. Effect of the cation structure on the properties of homobaric imidazolium ionic liquids. Phys Chem Chem Phys 2022;24:6453-6468. [PMID: 35244651 DOI: 10.1039/d1cp05169e] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
18
Klajmon M, Červinka C. Does Explicit Polarizability Improve Molecular Dynamics Predictions of Glass Transition Temperatures of Ionic Liquids? J Phys Chem B 2022;126:2005-2013. [PMID: 35195429 DOI: 10.1021/acs.jpcb.1c10809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Philippi F, Goloviznina K, Gong Z, Gehrke S, Kirchner B, Pádua AAH, Hunt PA. Charge transfer and polarisability in ionic liquids: a case study. Phys Chem Chem Phys 2022;24:3144-3162. [PMID: 35040843 DOI: 10.1039/d1cp04592j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
20
Maglia de Souza R, Karttunen M, Ribeiro MCC. Fine-Tuning the Polarizable CL&Pol Force Field for the Deep Eutectic Solvent Ethaline. J Chem Inf Model 2021;61:5938-5947. [PMID: 34797679 DOI: 10.1021/acs.jcim.1c01181] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
21
Klajmon M, Červinka C. Does Explicit Polarizability Improve Simulations of Phase Behavior of Ionic Liquids? J Chem Theory Comput 2021;17:6225-6239. [PMID: 34520200 DOI: 10.1021/acs.jctc.1c00518] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
22
Goloviznina K, Gong Z, Padua AAH. The CL &Pol polarizable force field for the simulation of ionic liquids and eutectic solvents. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1572] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
23
Jeong KJ, McDaniel JG, Yethiraj A. Deep Eutectic Solvents: Molecular Simulations with a First-Principles Polarizable Force Field. J Phys Chem B 2021;125:7177-7186. [PMID: 34181852 DOI: 10.1021/acs.jpcb.1c01692] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
24
Gong Z, Padua AAH. Effect of side chain modifications in imidazolium ionic liquids on the properties of the electrical double layer at a molybdenum disulfide electrode. J Chem Phys 2021;154:084504. [PMID: 33639754 DOI: 10.1063/5.0040172] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
25
Goloviznina K, Gong Z, Costa Gomes MF, Pádua AAH. Extension of the CL&Pol Polarizable Force Field to Electrolytes, Protic Ionic Liquids, and Deep Eutectic Solvents. J Chem Theory Comput 2021;17:1606-1617. [PMID: 33555860 DOI: 10.1021/acs.jctc.0c01002] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Rupakheti C, Lamoureux G, MacKerell AD, Roux B. Statistical mechanics of polarizable force fields based on classical Drude oscillators with dynamical propagation by the dual-thermostat extended Lagrangian. J Chem Phys 2020;153:114108. [PMID: 32962358 PMCID: PMC7656322 DOI: 10.1063/5.0019987] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 08/13/2020] [Indexed: 12/11/2022]  Open
27
Son CY, Wang ZG. Ion transport in small-molecule and polymer electrolytes. J Chem Phys 2020;153:100903. [PMID: 32933299 DOI: 10.1063/5.0016163] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
28
Massaro A, Avila J, Goloviznina K, Rivalta I, Gerbaldi C, Pavone M, Costa Gomes MF, Padua AAH. Sodium diffusion in ionic liquid-based electrolytes for Na-ion batteries: the effect of polarizable force fields. Phys Chem Chem Phys 2020;22:20114-20122. [DOI: 10.1039/d0cp02760j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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