Single-Molecule Force Spectroscopy Study on Force-Induced Melting in Polymer Single Crystals: The Chain Conformation Matters

Molecular dynamics simulations of single polyethylene chain folding during fast quenching using all-atom and united-atom models

Molecular dynamics simulations have been employed to investigate the folding behavior of a single linear polyethylene (PE) chain containing 1000 backbone carbon atoms under fast quenching based on all-atom and united-atom models. The single-chain folding characteristics were studied in detail for six different force fields by analyzing the evolution of chain conformations, folded structure characterisation, free energy and crystallisation. The results show that the all-trans chain undergoes a similar two-stage chain collapse mechanism during isothermal relaxation at T = 500 K, transitioning from local collapse to global collapse into a molten globule state under different force fields. During fast quenching at 100 K ns-1, the molten globule of all-atom model transitions into a folded, significantly anisotropic ordered structure under AMBER-AA or OPLS-AA force fields, while that of the united-atom model remains unchanged in its globular structure. The chain crystallization evolution indicates that the single chain folds into ordered lamellar structures with higher crystallinity under AMBER-AA and OPLS-AA force fields. In contrast, under the other four force fields, the single chain remains in a stable amorphous state.

Characterization of Surface Patterning on Polymer-Grafted Nanocubes Using Atomic Force Microscopy and Force Volume Mapping

Atomic force microscopy (AFM), in particular force spectroscopy, is a powerful tool for understanding the supramolecular structures associated with polymers grafted to surfaces, especially in regimes of low polymer density where different morphological structures are expected. In this study, we utilize force volume mapping to characterize the nanoscale surfaces of Ag nanocubes (AgNCs) grafted with a monolayer of polyethylene glycol (PEG) chains. Spatially resolved force-distance curves taken for a single AgNC were used to map surface properties, such as adhesion energy and deformation. We confirm the presence of surface octopus micelles that are localized on the corners of the AgNC, using force curves to resolve structural differences between the micelle "bodies" and "legs". Furthermore, we observe unique features of this system including a polymer corona stemming from AgNC-substrate interactions and polymer bridging stemming from particle-particle interactions.

Molecular-level periodic arrays of long-chain poly(3-hexylthiophene-2,5-diyl) driven by an electric field

Two-dimensional (2D) periodic arrays of conductive polymers represent attractive platforms for wiring functional molecules into the integrated circuits of molecular electronics. However, the large-scale assembly of polymer periodic arrays at the molecular level faces challenges such as curling, twisting, and aggregation. Here, we assembled the periodic arrays of long-chain poly(3-hexylthiophene-2,5-diyl) (P3HT, Mw = 65 k) at the solid-liquid interface by applying an electric field, within which the charged chain segments were aligned. Atomic force microscopy (AFM) imaging revealed that individual P3HT chains assemble into monolayers featuring face-on orientation, extended chain conformation and isolated packing, which is thermodynamically more stable than folded chains in 2D polycrystals. The assembly process is initiated with the formation of disordered clusters and progresses through voltage-dependent nucleation and growth of extended-chain arrays, wherein continuous conformational adjustments along the nucleation pathway exhibit dependence on the cluster size.

Mechanochemistry: Fundamental Principles and Applications

Mechanochemistry is an emerging research field at the interface of physics, mechanics, materials science, and chemistry. Complementary to traditional activation methods in chemistry, such as heat, electricity, and light, mechanochemistry focuses on the activation of chemical reactions by directly or indirectly applying mechanical forces. It has evolved as a powerful tool for controlling chemical reactions in solid state systems, sensing and responding to stresses in polymer materials, regulating interfacial adhesions, and stimulating biological processes. By combining theoretical approaches, simulations and experimental techniques, researchers have gained intricate insights into the mechanisms underlying mechanochemistry. In this review, the physical chemistry principles underpinning mechanochemistry are elucidated and a comprehensive overview of recent significant achievements in the discovery of mechanically responsive chemical processes is provided, with a particular emphasis on their applications in materials science. Additionally, The perspectives and insights into potential future directions for this exciting research field are offered.

Terraced and Three-dimensional Pyramid-shaped Polymer Single Crystal via low temperature-Assisted Microfluidic Technology

Three-dimensional pyramidal polymer single crystals provide spatial gradient variations within the crystal molecules, and these variations facilitate the study of the relationship between structure and properties within the molecules of various complexes with anisotropic structures. As described herein, we propose a low-temperature-assisted microfluidic pore channeling approach to prepare structurally ordered polymer single crystals. A mixture of dichloromethane and dimethyl sulfoxide was used as a prepolymer, and a liquid microfluidic technique was employed to grow the end-functionalized polymers into three-dimensional polymer single crystals. Through the ordered growth of single crystals, a personalized pyramidal pattern with a homogeneous structure was formed. To evaluate the mesh node density, low-temperature growth time and substrate type were also investigated. Rectangular, pyramidal, and dendritic patterns were synthesized via low-temperature single crystal growth. This work shows that low temperature-assisted microfluidics provides a novel means to tune the three-dimensional structure of polymer single crystals. This article is protected by copyright. All rights reserved.

Ultrahigh Adhesion Force Between Silica-Binding Peptide SB7 and Glass Substrate Studied by Single-Molecule Force Spectroscopy and Molecular Dynamic Simulation

Many proteins and peptides have been identified to effectively and specifically bind on certain surfaces such as silica, polystyrene and titanium dioxide. It is of great interest, in many areas such as enzyme immobilization, surface functionalization and nanotechnology, to understand how these proteins/peptides bind to solid surfaces. Here we use single-molecule force spectroscopy (SMFS) based on atomic force microscopy to directly measure the adhesion force between a silica-binding peptide SB7 and glass surface at single molecule level. SMFS results show that the adhesion force of a single SB7 detaching from the glass surface distributes in two populations at ~220 pN and 610 pN, which is higher than the unfolding forces of most mechanically stable proteins and the unbinding forces of most stable protein-protein interactions. Molecular dynamics simulation reveals that the electrostatic interactions between positively charged arginine residues and the silica surface dominates the binding of SB7 on silica. Our study provides experimental evidence and molecular mechanism at the single-molecule level for the SB7-based immobilization of proteins on silica-based surface, which is able to withstand high mechanical forces, making it an ideal fusion tag for silica surface immobilization or peptide-base adhesive materials.

100th Anniversary of Macromolecular Science Viewpoint: Single-Molecule Studies of Synthetic Polymers

Single polymer studies have revealed unexpected and heterogeneous dynamics among identical or seemingly similar macromolecules. In recent years, direct observation of single polymers has uncovered broad distributions in molecular behavior that play a key role in determining bulk properties. Early single polymer experiments focused primarily on biological macromolecules such as DNA, but recent advances in synthesis, imaging, and force spectroscopy have enabled broad exploration of chemically diverse polymer systems. In this Viewpoint, we discuss the recent study of synthetic polymers using single-molecule methods. In terms of polymer synthesis, direct observation of single chain polymerization has revealed heterogeneity in monomer insertion events at catalytic centers and decoupling of local and global growth kinetics. In terms of single polymer visualization, recent advances in super-resolution imaging, atomic force microscopy (AFM), and liquid-cell transmission electron microscopy (LC-TEM) can resolve structure and dynamics in single synthetic chains. Moreover, single synthetic polymers can be probed in the context of bulk material environments, including hydrogels, nanostructured polymers, and crystalline polymers. In each area, we highlight key challenges and exciting opportunities in using single polymer techniques to enhance our understanding of polymer science. Overall, the expanding versatility of single polymer methods will enable the molecular-scale design and fundamental understanding of a broad range of chemically diverse and functional polymeric materials.

Dynamic topology of double-stranded telomeric DNA studied by single-molecule manipulation in vitro

The dynamic topological structure of telomeric DNA is closely related to its biological function; however, no such structural information on full-length telomeric DNA has been reported due to difficulties synthesizing long double-stranded telomeric DNA. Herein, we developed an EM-PCR and TA cloning-based approach to synthesize long-chain double-stranded tandem repeats of telomeric DNA. Using mechanical manipulation assays based on single-molecule atomic force microscopy, we found that mechanical force can trigger the melting of double-stranded telomeric DNA and the formation of higher-order structures (G-quadruplexes or i-motifs). Our results show that only when both the G-strand and C-strand of double-stranded telomeric DNA form higher-order structures (G-quadruplexes or i-motifs) at the same time (e.g. in the presence of 100 mM KCl under pH 4.7), that the higher-order structure(s) can remain after the external force is removed. The presence of monovalent K⁺, single-wall carbon nanotubes (SWCNTs), acidic conditions, or short G-rich fragments (∼30 nt) can shift the transition from dsDNA to higher-order structures. Our results provide a new way to regulate the topology of telomeric DNA.

Enzymatic Construction of Protein Polymer/Polyprotein Using OaAEP1 and TEV Protease

The development of chemical and biological coupling technologies in recent years has made possible of protein polymers engineering. We have developed an enzymatic method for building polyproteins using a protein ligase OaAEP1 (asparagine endopeptidase 1) and protease TEV (tobacco etching virus). Using a mobile TEV protease site compatible with the OaAEP1 ligation, we achieved a stepwise polymerization of the protein on the surface. The produced polyprotein can be verified by protein unfolding scenario using atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS). Thus, this study provides an alternative method for polyprotein engineering and immobilization.

Verification of sortase for protein conjugation by single-molecule force spectroscopy and molecular dynamics simulations

SMFS and MD simulations revealed a closed conformation and a decreased stability of sortase-mediated polyprotein I27 when a linker with a high content of glycine is used.

"Sliding Crystals" on Low-Dimensional Carbonaceous Nanofillers as Distributed Nanopistons for Highly Damping Materials

Improving energy dissipation in lightweight polymer nanocomposites to achieve environmentally friendly and mechanically stable structures has reached a limit because of the low-density electrostatic interactions that can be harnessed through the stick-slip mechanism between carbonaceous nanofillers and polymeric chains wrapped around them. In this paper, the atomic friction between the two nanocomposite components is greatly amplified by locally increasing the density of the energetically higher noncovalent bonds. This gives rise to a new material design concept in which crystallite structures, nucleated around the carbonaceous nanofillers, become the source of enhanced energy dissipation. The rheological concept is a nanopiston unit consisting of a carbon nanotube (CNT) as a nanofiller coated with crystallite structures which, upon unconventionally and reversibly overcoming the interfacial interaction forces, monolithically roto-translate from an energetically stable state to the adjacent states. The efficiency of this novel "sliding crystals" mechanism is proven by its higher dissipation capability that turns out to be at least twice as much as that of the conventional CNT/polymer stick-slip within a larger strain range.

Quantifying the Chain Folding in Polymer Single Crystals by Single-Molecule Force Spectroscopy

Chain folding is a motif of polymer crystallization, which is essential for determining the crystallization kinetics. However, the experimental quantification of the chain folding remains a challenge because of limited instrumental resolution. Here, we quantify chain folding in solution-grown single crystals by using atomic force microscopy (AFM)-based single-molecule force spectroscopy. The fingerprint spectrum of force-induced chain motion allows us to decipher the adjacent and nonadjacent re-entry folding with spatial resolution of subnanometers. The average fractions of adjacent re-entry folds ⟨f⟩ are in the range 91-95% for polycaprolactone, poly-l-lactic acid, and polyamide 66, which is higher than the values determined by other classical technologies. The established single-molecule method is applicable to a broad range of crystalline polymer systems with different chain conformations or compositions.

Multistep Protein Unfolding Scenarios from the Rupture of a Complex Metal Cluster Cd3S9

Protein (un)folding is a complex and essential process. With the rapid development of single-molecule techniques, we can detect multiple and transient proteins (un)folding pathways/intermediates. However, the observation of multiple multistep (>2) unfolding scenarios for a single protein domain remains limited. Here, we chose metalloprotein with relatively stable and multiple metal-ligand coordination bonds as a system for such a purpose. Using AFM-based single-molecule force spectroscopy (SMFS), we successfully demonstrated the complex and multistep protein unfolding scenarios of the β-domain of a human protein metallothionein-3 (MT). MT is a protein of ~60 amino acids (aa) in length with 20 cysteines for various metal binding, and the β-domain (βMT) is of ~30 aa with an M3S9 metal cluster. We detected four different types of three-step protein unfolding scenarios from the Cd-βMT, which can be possibly explained by the rupture of Cd-S bonds in the complex Cd3S9 metal cluster. In addition, complex unfolding scenarios with four rupture peaks were observed. The Cd-S bonds ruptured in both single bond and multiple bonds modes. Our results provide not only evidence for multistep protein unfolding phenomena but also reveal unique properties of metalloprotein system using single-molecule AFM.