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Benckendorff CMM, Sunde-Brown P, Ní Cheallaigh A, Miller GJ. Synthesis of Nucleoside Analogs Containing Sulfur or Selenium Replacements of the Ribose Ring Oxygen or Carbon. J Org Chem 2024; 89:16977-16989. [PMID: 39572188 PMCID: PMC11629386 DOI: 10.1021/acs.joc.4c02409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 10/31/2024] [Accepted: 11/13/2024] [Indexed: 12/08/2024]
Abstract
Nucleoside analogs have proven highly successful in many pharmaceutical intervention strategies, and continued exploration of next generation structural motifs is required. Herein we discuss recent advances toward the chemical synthesis of heteroatom-modified nucleosides, where this is constituted by the chalcogens sulfur or selenium. Paying specific focus to the organic chemistry to incorporate these heteroatoms, we consider developments toward ribose ring oxygen and ring carbon replacements alongside chalcogen-modified heterobases.
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Affiliation(s)
- Caecilie M. M. Benckendorff
- School of Chemical and Physical Sciences
and Centre for Glycoscience, Keele University, Keele, Staffordshire ST5 5BG, United
Kingdom
| | - Peter Sunde-Brown
- School of Chemical and Physical Sciences
and Centre for Glycoscience, Keele University, Keele, Staffordshire ST5 5BG, United
Kingdom
| | - Aisling Ní Cheallaigh
- School of Chemical and Physical Sciences
and Centre for Glycoscience, Keele University, Keele, Staffordshire ST5 5BG, United
Kingdom
| | - Gavin J. Miller
- School of Chemical and Physical Sciences
and Centre for Glycoscience, Keele University, Keele, Staffordshire ST5 5BG, United
Kingdom
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Peng L, Zhao Y, Yang T, Tong Z, Tang Z, Orita A, Qiu R. Zirconium-Based Catalysts in Organic Synthesis. Top Curr Chem (Cham) 2022; 380:41. [PMID: 35951161 DOI: 10.1007/s41061-022-00396-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 06/07/2022] [Indexed: 11/30/2022]
Abstract
Zirconium is a silvery-white malleable and ductile metal at room temperature with a crustal abundance of 162 ppm. Its compounds, showing Lewis acidic behavior and high catalytic performance, have been recognized as a relatively cheap, low-toxicity, stable, green, and efficient catalysts for various important organic transformations. Commercially available inorganic zirconium chloride was widely applied as a catalyst to accelerate amination, Michael addition, and oxidation reactions. Well-designed zirconocene perfluorosulfonates can be applied in allylation, acylation, esterification, etc. N-Chelating oganozirconium complexes accelerate polymerization, hydroaminoalkylation, and CO2 fixation efficiently. In this review, the applications of both commercially available and synthesized zirconium catalysts in organic reactions in the last 5 years are highlighted. Firstly, the properties and application of zirconium and its compounds are simply introduced. After presenting the superiority of zirconium compounds, their applications as catalysts to accelerate organic transformations are classified and presented in detail. On the basis of different kinds of zirconium catalysts, organic reactions accelerated by inorganic zirconium catalysts, zirconium catalysts bearing Cp, and organozirconium catalysts without Cp are summarized, and the plausible reaction mechanisms are presented if available.
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Affiliation(s)
- Lifen Peng
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecule of Ministry of Education, Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, Hunan, China.,State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, China.,Department of Applied Chemistry and Biotechnology, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama, 700-0005, Japan
| | - Yanting Zhao
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecule of Ministry of Education, Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, Hunan, China
| | - Tianbao Yang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, China
| | - Zhou Tong
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, China
| | - Zilong Tang
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecule of Ministry of Education, Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, Hunan, China.
| | - Akihiro Orita
- Department of Applied Chemistry and Biotechnology, Okayama University of Science, 1-1 Ridai-cho, Kita-ku, Okayama, 700-0005, Japan.
| | - Renhua Qiu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, China.
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Aher UP, Srivastava D, Singh GP, S JB. Synthetic strategies toward 1,3-oxathiolane nucleoside analogues. Beilstein J Org Chem 2021; 17:2680-2715. [PMID: 34804240 PMCID: PMC8576827 DOI: 10.3762/bjoc.17.182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 10/14/2021] [Indexed: 11/28/2022] Open
Abstract
Sugar-modified nucleosides have gained considerable attention in the scientific community, either for use as molecular probes or as therapeutic agents. When the methylene group of the ribose ring is replaced with a sulfur atom at the 3’-position, these compounds have proved to be structurally potent nucleoside analogues, and the best example is BCH-189. The majority of methods traditionally involves the chemical modification of nucleoside structures. It requires the creation of artificial sugars, which is accompanied by coupling nucleobases via N-glycosylation. However, over the last three decades, efforts were made for the synthesis of 1,3-oxathiolane nucleosides by selective N-glycosylation of carbohydrate precursors at C-1, and this approach has emerged as a strong alternative that allows simple modification. This review aims to provide a comprehensive overview on the reported methods in the literature to access 1,3-oxathiolane nucleosides. The first focus of this review is the construction of the 1,3-oxathiolane ring from different starting materials. The second focus involves the coupling of the 1,3-oxathiolane ring with different nucleobases in a way that only one isomer is produced in a stereoselective manner via N-glycosylation. An emphasis has been placed on the C–N-glycosidic bond constructed during the formation of the nucleoside analogue. The third focus is on the separation of enantiomers of 1,3-oxathiolane nucleosides via resolution methods. The chemical as well as enzymatic procedures are reviewed and segregated in this review for effective synthesis of 1,3-oxathiolane nucleoside analogues.
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Affiliation(s)
- Umesh P Aher
- Chemical Research Department, Lupin Research Park, Lupin Limited, 46A/47A, Village Nande, Taluka Mulshi, Pune-412115, Maharashtra, India
| | - Dhananjai Srivastava
- Chemical Research Department, Lupin Research Park, Lupin Limited, 46A/47A, Village Nande, Taluka Mulshi, Pune-412115, Maharashtra, India
| | - Girij P Singh
- Chemical Research Department, Lupin Research Park, Lupin Limited, 46A/47A, Village Nande, Taluka Mulshi, Pune-412115, Maharashtra, India
| | - Jayashree B S
- Department of Pharmaceutical Chemistry, Manipal College of Pharmaceutical Sciences, Manipal Academy of Higher Education, Manipal-576104, Karnataka, India
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Advances on Greener Asymmetric Synthesis of Antiviral Drugs via Organocatalysis. Pharmaceuticals (Basel) 2021; 14:ph14111125. [PMID: 34832907 PMCID: PMC8625736 DOI: 10.3390/ph14111125] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 11/01/2021] [Indexed: 12/16/2022] Open
Abstract
Viral infections cause many severe human diseases, being responsible for remarkably high mortality rates. In this sense, both the academy and the pharmaceutical industry are continuously searching for new compounds with antiviral activity, and in addition, face the challenge of developing greener and more efficient methods to synthesize these compounds. This becomes even more important with drugs possessing stereogenic centers as highly enantioselective processes are required. In this minireview, the advances achieved to improve synthetic routes efficiency and sustainability of important commercially antiviral chiral drugs are discussed, highlighting the use of organocatalytic methods.
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Yoshida Y, Honma M, Kimura Y, Abe H. Structure, Synthesis and Inhibition Mechanism of Nucleoside Analogues as HIV-1 Reverse Transcriptase Inhibitors (NRTIs). ChemMedChem 2021; 16:743-766. [PMID: 33230979 DOI: 10.1002/cmdc.202000695] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 10/31/2020] [Indexed: 12/13/2022]
Abstract
Acquired immunodeficiency syndrome (AIDS) is caused by infection with the human immunodeficiency virus (HIV). Although treatments against HIV infection are available, AIDS remains a serious disease that causes many deaths annually. Although a variety of anti-HIV drugs have been synthesized and marketed to treat HIV-infected patients, nucleoside analogue reverse transcriptase inhibitors (NRTIs), which mimic nucleosides, are used extensively and remain a subject of interest to medicinal chemists. However, HIV has acquired drug resistance against NRTIs, and thus the struggle to find novel therapies continues. In this review, we trace the trajectory of NRTIs, focusing on the synthesis, mechanisms of action and applications of NRTIs that have been developed.
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Affiliation(s)
- Yuki Yoshida
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
| | - Masakazu Honma
- Nucleic Acid Medicine Research Laboratories, Research Functions Unit, R&D Division, Kyowa Kirin Co., Ltd., 3-6-6, Asahi-machi, Machida-shi, >, Tokyo, 194-8533, Japan
| | - Yasuaki Kimura
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
| | - Hiroshi Abe
- Graduate School of Science, Department of Chemistry, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.,Research Center for Materials Science, Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.,CREST, Japan Science and Technology Agency, 7, Gobancho, Chiyoda-ku, Tokyo, 102-0076, Japan.,Institute for Glyco-core Research (iGCORE), Nagoya University Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan
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Kashinath K, Snead DR, Burns JM, Stringham RW, Gupton BF, McQuade DT. Synthesis of an Oxathiolane Drug Substance Intermediate Guided by Constraint-Driven Innovation. Org Process Res Dev 2020; 24:2266-2270. [PMID: 33100812 PMCID: PMC7574620 DOI: 10.1021/acs.oprd.0c00145] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Indexed: 11/29/2022]
Abstract
![]()
A new
route was developed for construction of the oxathiolane intermediate
used in the synthesis of lamivudine (3TC) and emtricitabine (FTC).
We developed the presented route by constraining ourselves to low-cost,
widely available starting materials—we refer to this as supply-centered
synthesis. Sulfenyl chloride chemistry was used to construct the framework
for the oxathiolane from acyclic precursors. This bond construction
choice enabled the use of chloroacetic acid, vinyl acetate, sodium
thiosulfate, and water to produce the oxathiolane.
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Affiliation(s)
- K. Kashinath
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
| | - David R. Snead
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
| | - Justina M. Burns
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
| | - Rodger W. Stringham
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
| | - B. Frank Gupton
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
| | - D. Tyler McQuade
- Medicines for All Institute, Virginia Commonwealth University, 737 North Fifth Street, Box 980100, Richmond, Virginia 23298, United States
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