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Kim SF, Amber C, Bartholomew GL, Sarpong R. Skeletal Editing Strategies Driven by Total Synthesis. Acc Chem Res 2025. [PMID: 40373286 DOI: 10.1021/acs.accounts.5c00174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2025]
Abstract
ConspectusSingle-atom skeletal editing strategies that precisely modify the core frameworks of molecules have the potential to streamline and accelerate organic synthesis by enabling conceptually simple, but otherwise synthetically challenging, retrosynthetic disconnections. In contrast to broader skeletal remodeling and rearrangement strategies, these methodologies more specifically target single-atom changes with high selectivity, even within complex molecules such as natural products or pharmaceuticals. For the past several years, our laboratory has developed several skeletal editing methodologies, including single-atom ring contractions, expansions, and transpositions of both saturated and unsaturated heterocycles, as well as other carbon scaffolds. This Account details the evolution of "skeletal editing logic" within the context of our extensive work on natural product total synthesis.Early work in the Sarpong group leveraged metal-mediated C-C bond cleavage of in situ-generated strained intermediates to accomplish total syntheses of natural products, such as the icetexane diterpenoids and cyathane diterpenes. Continuing our focus on leveraging C-C bond cleavage through "break-it-to-make-it" strategies, we then developed carvone remodeling strategies to access a variety of terpenoids (including longiborneol sesquiterpenoids, phomactins, and xishacorenes) from hydroxylated pinene derivatives. In applying this skeletal remodeling and C-C cleavage framework to alkaloid natural products, such as the preparaherquimides and lycodine-type alkaloids, we recognized that single-atom changes to the saturated nitrogen-containing rings within these natural products would enable the direct conversion between distinct but structurally related natural product families. Thus, we began developing methods that selectively modify the core frameworks of N-heterocycles; this focus led to our work on the deconstructive fluorination and diversification of piperidines and ultimately to our recent body of work on direct, single-atom core framework modifications (single-atom skeletal editing). In the context of saturated heterocycles, we developed photomediated enantioselective ring contractions of α-acylated motifs and reductive ring contractions of cyclic hydroxylamines. For unsaturated heterocycles, we have developed ring contractions of azines (e.g., pyrimidine to pyrazole), 15N isotopic labeling of azines, and phototranspositions of indazoles to benzimidazoles. To direct our focus on reaction development, a cheminformatic analysis of heteroaromatic skeletal edits served to quantitatively inform which transformations would most significantly expand the accessible chemical space. Apart from heterocycles, we also reported single-nitrogen insertion through the reductive amination of carbonyl C-C bonds. Ultimately, the goal of this research is to develop mild and selective skeletal editing methodologies that can be applied to total synthesis and organic synthesis more generally. While recent total syntheses from our group have targeted simplified retrosyntheses through single-atom skeletal editing logic (e.g., daphenylline and harringtonolide), multiple steps were still required to achieve the formal desired "edit". As such, the continued development of truly single-step, mild, and selective reactions that can edit the cores of highly complex molecules remains highly desirable.
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Affiliation(s)
- Sojung F Kim
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Charis Amber
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - G Logan Bartholomew
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
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Sennari G, Yamagishi H, Sarpong R. Remote C-H Amination and Alkylation of Camphor at C8 through Hydrogen-Atom Abstraction. J Am Chem Soc 2024; 146:7850-7857. [PMID: 38447162 DOI: 10.1021/jacs.4c01351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2024]
Abstract
Camphor continues to serve as a versatile chiral building block for chemical synthesis. We have developed a novel method to functionalize the camphor skeleton at C8 using an intramolecular hydrogen atom abstraction. The key advance involves the use of a camphor-derived aminonitrile, which is converted to the corresponding nitrogen-centered radical under photoredox conditions to effect the 1,5-hydrogen atom transfer at C8. The resulting carbon-centered radical at C8 was utilized in a C-H amination to access topologically complex proline derivatives. Furthermore, the total synthesis of several sesquiterpenoids was accomplished by engaging the radical generated at C8 in alkylation reactions.
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Affiliation(s)
- Goh Sennari
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- O̅mura Satoshi Memorial Institute and Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
| | - Hiroki Yamagishi
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, California 94720, United States
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Cai M, Ma J, Wu Q, Lin A, Yao H. Enantioselective Syntheses of 2-Azabicyclo[2.2.1]heptanes via Brønsted Acid Catalyzed Ring-Opening of meso-Epoxides. Org Lett 2022; 24:8791-8795. [PMID: 36414324 DOI: 10.1021/acs.orglett.2c03529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A chiral phosphoric acid-catalyzed ring-opening of meso-epoxides was developed. A range of 2-azabicyclo[2.2.1]heptanes were obtained in high yields with excellent enantioselectivities. In addition, the hydroxyl and amide groups in the products provided handles for further derivatization.
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Affiliation(s)
- Min Cai
- State Key Laboratory of Natural Medicines (SKLNM) and Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, P. R. China
| | - Jiao Ma
- State Key Laboratory of Natural Medicines (SKLNM) and Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, P. R. China
| | - Qimin Wu
- State Key Laboratory of Natural Medicines (SKLNM) and Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, P. R. China
| | - Aijun Lin
- State Key Laboratory of Natural Medicines (SKLNM) and Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, P. R. China
| | - Hequan Yao
- State Key Laboratory of Natural Medicines (SKLNM) and Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, P. R. China
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Garsi JB, Guggari S, Deis T, Ma M, Hocine S, Hanessian S. 2-Oxa-5-azabicyclo[2.2.1]heptane as a Platform for Functional Diversity: Synthesis of Backbone-Constrained γ-Amino Acid Analogues. J Org Chem 2022; 87:11261-11273. [PMID: 35900070 DOI: 10.1021/acs.joc.2c01338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We communicate a versatile synthetic approach to C-3 disubstituted 2-oxa-5-azabicyclo[2.2.1]heptanes as carbon-atom bridged morpholines, starting with 4R-hydroxy-l-proline as a chiron. Attaching an acetic acid moiety on the C-3 carbon of the 2-oxa-5-azabicyclo[2.2.1]heptane core reveals the framework of an embedded γ-amino butyric acid (GABA). Variations in the nature of the substituent on the tertiary C-3 atom with different alkyls or aryls led to backbone-constrained analogues of the U.S. Food and Drug Administration-approved drugs baclofen and pregabalin.
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Affiliation(s)
- Jean-Baptiste Garsi
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
| | - Solène Guggari
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
| | - Thomas Deis
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
| | - Myles Ma
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
| | - Sofiane Hocine
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
| | - Stephen Hanessian
- Department of Chemistry, Université de Montréal, 1375 Avenue Thérèse-Lavoie-Roux, Montréal, QC H2V 0B3, Canada
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Lazib Y, Retailleau P, Saget T, Darses B, Dauban P. Asymmetric Synthesis of Enantiopure Pyrrolidines by C(sp 3 )-H Amination of Hydrocarbons. Angew Chem Int Ed Engl 2021; 60:21708-21712. [PMID: 34329511 DOI: 10.1002/anie.202107898] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Indexed: 11/07/2022]
Abstract
The asymmetric synthesis of enantiopure pyrrolidines is reported via a streamlined strategy relying on two sequential C-H functionalizations of simple hydrocarbons. The first step is a regio- and stereoselective catalytic nitrene C-H insertion. Then, a subsequent diastereoselective cyclization involving a 1,5-hydrogen atom transfer (HAT) from a N-centered radical leads to the formation of pyrrolidines that can then be converted to their free NH-derivatives.
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Affiliation(s)
- Yanis Lazib
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Av. de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Pascal Retailleau
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Av. de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Tanguy Saget
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Av. de la Terrasse, 91198, Gif-sur-Yvette, France
| | - Benjamin Darses
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Av. de la Terrasse, 91198, Gif-sur-Yvette, France.,Université Grenoble Alpes, Département de Chimie Moléculaire, CNRS UMR-5250, 38058, Grenoble, France
| | - Philippe Dauban
- Université Paris-Saclay, CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Av. de la Terrasse, 91198, Gif-sur-Yvette, France
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Lazib Y, Retailleau P, Saget T, Darses B, Dauban P. Asymmetric Synthesis of Enantiopure Pyrrolidines by C(sp
3
)−H Amination of Hydrocarbons. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202107898] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Yanis Lazib
- Université Paris-Saclay CNRS Institut de Chimie des Substances Naturelles UPR 2301 Av. de la Terrasse 91198 Gif-sur-Yvette France
| | - Pascal Retailleau
- Université Paris-Saclay CNRS Institut de Chimie des Substances Naturelles UPR 2301 Av. de la Terrasse 91198 Gif-sur-Yvette France
| | - Tanguy Saget
- Université Paris-Saclay CNRS Institut de Chimie des Substances Naturelles UPR 2301 Av. de la Terrasse 91198 Gif-sur-Yvette France
| | - Benjamin Darses
- Université Paris-Saclay CNRS Institut de Chimie des Substances Naturelles UPR 2301 Av. de la Terrasse 91198 Gif-sur-Yvette France
- Université Grenoble Alpes Département de Chimie Moléculaire CNRS UMR-5250 38058 Grenoble France
| | - Philippe Dauban
- Université Paris-Saclay CNRS Institut de Chimie des Substances Naturelles UPR 2301 Av. de la Terrasse 91198 Gif-sur-Yvette France
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Maddess ML, Cleator E, Morimoto M, Goodyear A, Dieguez-Vazquez A, Gibb A, Kirtley A, Wang J, Qi J, Kong L, Alam M, Keen S, Oliver SF, Wen X, Lam YH. Development of a Stereoselective Synthesis of (1 R,4 R)- and (1 S,4 S)-2-Oxa-5-azabicyclo[2.2.2]octane. Org Process Res Dev 2021. [DOI: 10.1021/acs.oprd.1c00098] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthew L. Maddess
- Process Research and Development, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Ed Cleator
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Mariko Morimoto
- Process Research and Development, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Adrian Goodyear
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Alejandro Dieguez-Vazquez
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Andrew Gibb
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Andy Kirtley
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Jie Wang
- Pharmaron Beijing, Co. Ltd., No. 6 TaiHe Road, BDA, Beijing 100176, China
| | - Ji Qi
- Process Research and Development, Merck & Co., Inc., P.O. Box 2000, Rahway, New Jersey 07065, United States
| | - Lingzhu Kong
- Pharmaron Beijing, Co. Ltd., No. 6 TaiHe Road, BDA, Beijing 100176, China
| | - Mahbub Alam
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Stephen Keen
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Steven F. Oliver
- Process Research and Development, Merck Sharp & Dohme Ltd, Hertford Road, Hoddesdon, Hertfordshire EN11 9BU, U.K
| | - Xin Wen
- Process Research and Development, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Yu-Hong Lam
- Computational and Structural Chemistry, Merck & Co., Inc., Rahway, New Jersey 07065, United States
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Intramolecular [3+2]-cycloaddition of salicylaldehydes-based cyclic azomethine imines to access novel tetrahydrochromeno[4,3-c]pyrazolo[1,2-a]pyrazol-9-ones. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.131992] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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9
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Shcherbakova V, Dibchak D, Snisarenko M, Skalenko Y, Denisenko AV, Kuznetsova AS, Mykhailiuk PK. Bicyclic Piperidines via [2 + 2] Photocycloaddition. J Org Chem 2021; 86:2200-2209. [PMID: 33211487 DOI: 10.1021/acs.joc.0c02355] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
A synthetic strategy to fused bicyclic piperidines-building blocks for medicinal chemistry-is developed. The key step was an intramolecular [2 + 2]-photocyclization. The photochemical step was performed on a gram scale. Crystallographic analysis of the obtained compounds revealed that they occupy a novel chemical space and can be considered as elongated analogues of 3-substituted piperidines.
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Affiliation(s)
| | | | | | - Yevhen Skalenko
- Enamine Ltd., Chervonotkatska 78, 02094 Kyiv, Ukraine.,V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, Murmanska 1, 02094 Kyiv, Ukraine
| | | | | | - Pavel K Mykhailiuk
- Enamine Ltd., Chervonotkatska 78, 02094 Kyiv, Ukraine.,Taras Shevchenko National University of Kyiv, Volodymyrska 64, 01601 Kyiv, Ukraine
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Ji YX, Li J, Li CM, Qu S, Zhang B. Manganese-Catalyzed N-F Bond Activation for Hydroamination and Carboamination of Alkenes. Org Lett 2020; 23:207-212. [PMID: 33305569 DOI: 10.1021/acs.orglett.0c03916] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
A visible-light-promoted method for generating amidyl radicals from N-fluorosulfonamides via a manganese-catalyzed N-F bond activation strategy is reported. This protocol employs a simple manganese complex, Mn2(CO)10, as the precatalyst and a cheap silane, (MeO)3SiH, as both the hydrogen-atom donor and the F-atom acceptor, enabling intramolecular/intermolecular hydroaminations of alkenes, two-component carboamination of alkenes, and even three-component carboamination of alkenes. A wide range of valuable aliphatic sulfonamides can be readily prepared using these practical reactions.
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Affiliation(s)
- Yun-Xing Ji
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 210009, China
| | - Jinxia Li
- College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Chun-Min Li
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 210009, China
| | - Shuanglin Qu
- College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Bo Zhang
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 210009, China
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