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Jiang Y, Wei Y, Zhou QY, Sun GQ, Fu XP, Levin N, Zhang Y, Liu WQ, Song N, Mohammed S, Davis BG, Koh MJ. Direct radical functionalization of native sugars. Nature 2024; 631:319-327. [PMID: 38898275 PMCID: PMC11236704 DOI: 10.1038/s41586-024-07548-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 05/09/2024] [Indexed: 06/21/2024]
Abstract
Naturally occurring (native) sugars and carbohydrates contain numerous hydroxyl groups of similar reactivity1,2. Chemists, therefore, rely typically on laborious, multi-step protecting-group strategies3 to convert these renewable feedstocks into reagents (glycosyl donors) to make glycans. The direct transformation of native sugars to complex saccharides remains a notable challenge. Here we describe a photoinduced approach to achieve site- and stereoselective chemical glycosylation from widely available native sugar building blocks, which through homolytic (one-electron) chemistry bypasses unnecessary hydroxyl group masking and manipulation. This process is reminiscent of nature in its regiocontrolled generation of a transient glycosyl donor, followed by radical-based cross-coupling with electrophiles on activation with light. Through selective anomeric functionalization of mono- and oligosaccharides, this protecting-group-free 'cap and glycosylate' approach offers straightforward access to a wide array of metabolically robust glycosyl compounds. Owing to its biocompatibility, the method was extended to the direct post-translational glycosylation of proteins.
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Affiliation(s)
- Yi Jiang
- Department of Chemistry, National University of Singapore, Singapore, Singapore
- The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK
- Department of Pharmacology, University of Oxford, Oxford, UK
| | - Yi Wei
- Department of Chemistry, National University of Singapore, Singapore, Singapore
| | - Qian-Yi Zhou
- Department of Chemistry, National University of Singapore, Singapore, Singapore
| | - Guo-Quan Sun
- Department of Chemistry, National University of Singapore, Singapore, Singapore
| | - Xia-Ping Fu
- The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK
- Department of Pharmacology, University of Oxford, Oxford, UK
| | - Nikita Levin
- The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK
- Department of Pharmacology, University of Oxford, Oxford, UK
| | - Yijun Zhang
- Department of Chemistry, National University of Singapore, Singapore, Singapore
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, China
| | - Wen-Qiang Liu
- Department of Chemistry, National University of Singapore, Singapore, Singapore
| | - NingXi Song
- Department of Chemistry, National University of Singapore, Singapore, Singapore
| | - Shabaz Mohammed
- The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK
- Department of Chemistry, University of Oxford, Oxford, UK
- Department of Biochemistry, University of Oxford, Oxford, UK
| | - Benjamin G Davis
- The Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK.
- Department of Pharmacology, University of Oxford, Oxford, UK.
- Department of Chemistry, University of Oxford, Oxford, UK.
| | - Ming Joo Koh
- Department of Chemistry, National University of Singapore, Singapore, Singapore.
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2
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Werner M, Brinkhofer J, Hammermüller L, Heim T, Pham TL, Huber J, Klein C, Thomas F. Peptide Boronic Acids by Late-Stage Hydroboration on the Solid Phase. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2400640. [PMID: 38810019 PMCID: PMC11267286 DOI: 10.1002/advs.202400640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 05/15/2024] [Indexed: 05/31/2024]
Abstract
Organoboron compounds have a wide range of applications in numerous research fields, and methods to incorporate them in biomolecules are much sought after. Here, on-resin chemical syntheses of aliphatic and vinylogous peptide boronic acids are presented by transition metal-catalyzed late-stage hydroboration of alkene and alkyne groups in peptides and peptoids, for example on allyl- and propargylglycine residues, using readily available chemicals. These methods yield peptide boronic acids with much shorter linkers than previously reported on-resin methods. Furthermore, the methods are regio- and stereoselective, compatible with all canonical amino acid residues and can be applied to short, long, and in part even "difficult" peptide sequences. In a feasibility study, the protected peptide vinylboronic acids are further derivatized by the Petasis reaction using salicylaldehyde derivatives. The ability of the obtained peptide boronic acids to reversibly bind to carbohydrates is demonstrated in a catch-release model experiment using a fluorescently labeled peptide boronic acid on cross-linked dextran beads. In summary, this highlights the potential of the target compounds for drug discovery, glycan-specific target recognition, controlled release, and diagnostics.
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Affiliation(s)
- Marius Werner
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
- Medicinal ChemistryInstitute of Pharmacy and Molecular Biotechnology (IPMB)Heidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Julian Brinkhofer
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Leon Hammermüller
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Thomas Heim
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Truc Lam Pham
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Jonas Huber
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Christian Klein
- Medicinal ChemistryInstitute of Pharmacy and Molecular Biotechnology (IPMB)Heidelberg UniversityIm Neuenheimer Feld 36469120HeidelbergGermany
| | - Franziska Thomas
- Institute of Organic ChemistryHeidelberg UniversityIm Neuenheimer Feld 27069120HeidelbergGermany
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3
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Zubkov MO, Dilman AD. Radical reactions enabled by polyfluoroaryl fragments: photocatalysis and beyond. Chem Soc Rev 2024; 53:4741-4785. [PMID: 38536104 DOI: 10.1039/d3cs00889d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Polyfluoroarenes have been known for a long time, but they are most often used as fluorinated building blocks for the synthesis of aromatic compounds. At the same time, due to peculiar fluorine effect, they have unique properties that provide applications in various fields ranging from synthesis to materials science. This review summarizes advances in the radical chemistry of polyfluoroarenes, which have become possible mainly with the advent of photocatalysis. Transformations of the fluorinated ring via the C-F bond activation, as well as use of fluoroaryl fragments as activating groups and hydrogen atom transfer agents are discussed. The ability of fluoroarenes to serve as catalysts is also considred.
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Affiliation(s)
- Mikhail O Zubkov
- N. D. Zelinsky Institute of Organic Chemistry, Leninsky prosp. 47, 119991 Moscow, Russian Federation.
| | - Alexander D Dilman
- N. D. Zelinsky Institute of Organic Chemistry, Leninsky prosp. 47, 119991 Moscow, Russian Federation.
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4
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Jing R, Powell WC, Fisch KJ, Walczak MA. Desulfurative Borylation of Small Molecules, Peptides, and Proteins. J Am Chem Soc 2023; 145:22354-22360. [PMID: 37812507 PMCID: PMC10594600 DOI: 10.1021/jacs.3c09081] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/11/2023]
Abstract
We introduce a direct conversion of alkyl thiols into boronic acids, facilitated by a water-soluble phosphine, 1,3,5-triaza-7-phosphaadamantane (PTA), in conjunction with tetrahydroxydiboron (B2(OH)4), acting as both a radical initiator and a boron source. This desulfurative borylation reaction has been successfully applied to various substrates, including cysteine residues in oligopeptides and small proteins, primary alkyl thiols found in pharmaceutical compounds, disulfides, and selenocysteine. Optimization of reaction conditions was undertaken to reduce the formation of unwanted reactions, such as the reduction of alanyl or other primary radicals, and to prevent deleterious reactions between the phosphine and N-terminal amine that lead to methylene adducts by utilizing a buffer containing glycine-glycine (GG) dipeptide. The developed method is characterized by its operational simplicity and robustness. Moreover, its compatibility with various functional groups present in peptides and proteins makes it a promising tool for late-stage functionalization, extending its potential application across a broad spectrum of chemical and biological targets.
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Affiliation(s)
- Ruiheng Jing
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309, United States
| | - Wyatt C Powell
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309, United States
| | - Kyle J Fisch
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309, United States
| | - Maciej A Walczak
- Department of Chemistry, University of Colorado, Boulder, Colorado 80309, United States
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Levin VV, Dilman AD. Visible-Light Promoted Radical Fluoroalkylation of O- and N-Substituted Alkenes. CHEM REC 2023; 23:e202300038. [PMID: 37017493 DOI: 10.1002/tcr.202300038] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/21/2023] [Indexed: 04/06/2023]
Abstract
Interaction of enol ethers enol acetates, enamides and enamines with fluorinated reagents may be considered as a reliable method for the synthesis of organofluorine compounds. While classic nucleophile/electrophile substitution or addition mechanisms cannot be realized for coupling of these components, their intrinsic reactivities are revealed with the aid of photoredox catalysis. A combination of these electron donating and accepting components provides a perfect balance needed for individual redox steps, which in some cases may proceed even without a photocatalyst. The same electronic factors also support the key C,C-bond forming event involving addition of fluorinated radical at the electron rich double bond.
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Affiliation(s)
- Vitalij V Levin
- N. D. Zelinsky Institute of Organic Chemistry, 119991, Moscow, Leninsky prosp. 47, Russian Federation
| | - Alexander D Dilman
- N. D. Zelinsky Institute of Organic Chemistry, 119991, Moscow, Leninsky prosp. 47, Russian Federation
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Panferova LI, Zubkov MO, Kosobokov MD, Dilman AD. Light-Promoted Dearylation of Perfluorinated Aryl Sulfides with N-Heterocyclic Carbene–Borane. Org Lett 2022; 24:8559-8563. [DOI: 10.1021/acs.orglett.2c03585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Liubov I. Panferova
- N.D. Zelinsky Institute of Organic Chemistry, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Mikhail O. Zubkov
- N.D. Zelinsky Institute of Organic Chemistry, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Mikhail D. Kosobokov
- N.D. Zelinsky Institute of Organic Chemistry, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
| | - Alexander D. Dilman
- N.D. Zelinsky Institute of Organic Chemistry, Leninsky Prospekt 47, 119991 Moscow, Russian Federation
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7
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Xu W, Zheng P, Zhou J, Hu Z, XU T. Modular and Fast Synthesis of Versatile Secondary α,α‐Dialkyl Boronates via Deoxygenative Alkylboration of Aldehydes. Angew Chem Int Ed Engl 2022; 61:e202214213. [DOI: 10.1002/anie.202214213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Wenhao Xu
- Shanghai Key Laboratory of Chemical Assessment and Sustainability School of Chemical Science and Engineering Tongji University 1239 Siping Road Shanghai 200092 P. R. China
| | - Purui Zheng
- Shanghai Key Laboratory of Chemical Assessment and Sustainability School of Chemical Science and Engineering Tongji University 1239 Siping Road Shanghai 200092 P. R. China
| | - Jun Zhou
- Shanghai Key Laboratory of Chemical Assessment and Sustainability School of Chemical Science and Engineering Tongji University 1239 Siping Road Shanghai 200092 P. R. China
| | - Zihao Hu
- Shanghai Key Laboratory of Chemical Assessment and Sustainability School of Chemical Science and Engineering Tongji University 1239 Siping Road Shanghai 200092 P. R. China
| | - Tao XU
- Shanghai Key Laboratory of Chemical Assessment and Sustainability School of Chemical Science and Engineering Tongji University 1239 Siping Road Shanghai 200092 P. R. China
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Zubkov MO, Kosobokov MD, Levin VV, Dilman AD. Photocatalyzed Decarboxylative Thiolation of Carboxylic Acids Enabled by Fluorinated Disulfide. Org Lett 2022; 24:2354-2358. [PMID: 35297636 DOI: 10.1021/acs.orglett.2c00549] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Thiolation of carboxylic acids using a disulfide reagent having tetrafluoropyridinyl groups is described. The light-mediated process is performed using an acridine-type photocatalyst. Primary, secondary, tertiary, and heteroatom-substituted carboxylic acids can be thiolated, and the method can be applied to the late-stage modification of a range of naturally occurring compounds and drugs. The fluorinated pyridine fragment is believed to enable the C-S bond formation. The resulting sulfides were used as redox-active radical precursors.
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Affiliation(s)
- Mikhail O Zubkov
- N. D. Zelinsky Institute of Organic Chemistry, 119991 Moscow, Leninsky prosp. 47, Russian Federation
| | - Mikhail D Kosobokov
- N. D. Zelinsky Institute of Organic Chemistry, 119991 Moscow, Leninsky prosp. 47, Russian Federation
| | - Vitalij V Levin
- N. D. Zelinsky Institute of Organic Chemistry, 119991 Moscow, Leninsky prosp. 47, Russian Federation
| | - Alexander D Dilman
- N. D. Zelinsky Institute of Organic Chemistry, 119991 Moscow, Leninsky prosp. 47, Russian Federation
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Huang M, Hu J, Krummenacher I, Friedrich A, Braunschweig H, Westcott SA, Radius U, Marder TB. Base-Mediated Radical Borylation of Alkyl Sulfones. Chemistry 2022; 28:e202103866. [PMID: 34713940 PMCID: PMC9299846 DOI: 10.1002/chem.202103866] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Indexed: 11/06/2022]
Abstract
A practical and direct method was developed for the production of versatile alkyl boronate esters via transition metal-free borylation of primary and secondary alkyl sulfones. The key to the success of the strategy is the use of bis(neopentyl glycolato) diboron (B2 neop2 ), with a stoichiometric amount of base as a promoter. The practicality and industrial potential of this protocol are highlighted by its wide functional group tolerance, the late-stage modification of complex compounds, no need for further transesterification, and operational simplicity. Radical clock, radical trap experiments, and EPR studies were conducted which show that the borylation process involves radical intermediates.
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Affiliation(s)
- Mingming Huang
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Jiefeng Hu
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Ivo Krummenacher
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Alexandra Friedrich
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Holger Braunschweig
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Stephen A. Westcott
- Department of Chemistry & BiochemistryMount Allison UniversitySackvilleNB E4L 1G8Canada
| | - Udo Radius
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Todd B. Marder
- Institute of Inorganic Chemistry and Institute for Sustainable Chemistry & Catalysis with BoronJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
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10
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Hsu CM, Lee SC, Tsai HE, Tsao YT, Chan CL, Miñoza S, Tsai ZN, Li LY, Liao HH. Desulfurative Ni-Catalyzed Reductive Cross-Coupling of Benzyl Mercaptans/Mercaptoacetates with Aryl Halides. J Org Chem 2022; 87:3799-3803. [PMID: 35020395 DOI: 10.1021/acs.joc.1c02897] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The C-S activation and sulfur removal from native thiols is challenging, which limits their application as feedstock materials in organic synthesis despite their natural abundance. Herein, we introduce a per-/polyfluoroaryl moiety, which serves as a redox-active scaffold, into sp3-hybridized thiols to activate the C-S bond. Using a Ni catalyst with MgBr2 as an additive, the S group can be removed to yield an aliphatic radical that can react with an aryl halide in a reductive cross-coupling.
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Affiliation(s)
- Che-Ming Hsu
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Shao-Chi Lee
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Hao-En Tsai
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Yong-Ting Tsao
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Cheng-Lin Chan
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Shinje Miñoza
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Zong-Nan Tsai
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Li-Yun Li
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
| | - Hsuan-Hung Liao
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan (R.O.C.)
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Abstract
The direct C–S borylation of aryl sulfides with B2pin2 has been achieved via a transition-metal-free photochemical process. With blue LED irradiation, aryl sulfides with various functional groups were converted to...
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