Direct and Selective 3-Amidation of Indoles Using Electrophilic N-[(Benzenesulfonyl)oxy]amides

SN2 Reaction at the Amide Nitrogen Center Enables Hydrazide Synthesis

Nucleophilic substitutions are fundamentally important transformations in synthetic organic chemistry. Despite the substantial advances in bimolecular nucleophilic substitutions (SN2) at saturated carbon centers, analogous SN2 reaction at the amide nitrogen atom remains extremely limited. Here we report an SN2 substitution method at the amide nitrogen atom with amine nucleophiles for nitrogen-nitrogen (N-N) bond formation that leads to a novel strategy toward biologically and medicinally important hydrazide derivatives. We found the use of sulfonate-leaving groups at the amide nitrogen atom played a pivotal role in the reaction. This new N-N coupling reaction allows the use of O-tosyl hydroxamates as electrophiles and readily available amines, including acyclic aliphatic amines and saturated N-heterocycles as nucleophiles. The reaction features mild conditions, broad substrate scope (>80 examples), excellent functional group tolerability, and scalability. The method is applicable to late-stage modification of various approved drug molecules, thus enabling complex hydrazide scaffold synthesis.

A General Photocatalytic Strategy for Nucleophilic Amination of Primary and Secondary Benzylic C-H Bonds

We report a visible-light photoredox-catalyzed method that enables nucleophilic amination of primary and secondary benzylic C(sp3)-H bonds. A novel amidyl radical precursor and organic photocatalyst operate in tandem to transform primary and secondary benzylic C(sp3)-H bonds into carbocations via sequential hydrogen atom transfer (HAT) and oxidative radical-polar crossover. The resulting carbocation can be intercepted by a variety of N-centered nucleophiles, including nitriles (Ritter reaction), amides, carbamates, sulfonamides, and azoles, for the construction of pharmaceutically relevant C(sp3)-N bonds under unified reaction conditions. Mechanistic studies indicate that HAT is amidyl radical-mediated and that the photocatalyst operates via a reductive quenching pathway. These findings establish a mild, metal-free, and modular protocol for the rapid diversification of C(sp3)-H bonds to a library of aminated products.

Mechanistic duality of indolyl 1,3-heteroatom transposition

A novel mechanistic duality has been revealed from the indolyl 1,3-heteroatom transposition (IHT) of N-hydroxyindole derivatives. A series of in-depth mechanistic investigations suggests that two separate mechanisms are operating simultaneously. Moreover, the relative contribution of each mechanistic pathway, the energy barrier for each pathway, and the identity of the primary pathway were shown to be the functions of the electronic properties of the substrate system. Based on the mechanistic understanding obtained, a mechanism-driven strategy for the general and efficient introduction of a heteroatom at the 3-position of indole has been developed. The reaction developed exhibits a broad substrate scope to provide the products in various forms of the functionalised indole. Moreover, the method is applicable to the introduction of both oxygen- and nitrogen-based functional groups.

A Two-Step Synthesis of Unprotected 3-Aminoindoles via Post Functionalization with Nitrostyrene

A novel, low-cost method for the preparation of not easily accessible free 3-aminoindoles has been developed. This approach is based on a well-established reaction between indoles and nitrostyrene in the presence of phosphorous acid, which results in the formation of 4'-phenyl-4'H-spiro[indole-3,5'-isoxazoles]. The latter could be transformed to corresponding aminated indoles by reaction with hydrazine hydrate in good or excellent yields upon microwave-assisted heating.

Catalytic Atroposelective Electrophilic Amination of Indoles

Reported here is the first catalytic atroposelective electrophilic amination of indoles, which delivers functionalized atropochiral N-sulfonyl-3-arylaminoindoles with excellent optical purity. This reaction was furnished by 1,6-nucleophilic addition to p-quinone diimines. Control experiments suggest an ionic mechanism that differs from the radical addition pathway commonly proposed for 1,6-addition to quinones. The origin of 1,6-addition selectivity was investigated through computational studies. Preliminary studies show that the obtained 3-aminoindoles atropisomers exhibit anticancer activities. This method is valuable with respect to enlarging the toolbox for atropochiral amine derivatives.

Catalyst-Switchable Divergent Synthesis of Bis(indolyl)alkanes and 3-Alkylated Indoles from Styrene Oxides

A novel and effective Brønsted acid-catalyzed chemoselective synthesis of bis(indolyl)alkanes and 3-alkyl indoles is reported. The selectivity of two significant indole derivatives is attained by allowing the same substrates to go through divergent reaction routes catalyzed by different catalysts. Furthermore, this mild approach is applicable to a wide range of substrates and has high efficacy in large-scale reactions. A plausible mechanism is provided based on the control experiments and spectroscopic studies.

Copper-Catalyzed Regiospecific Amination of Heteroarenes with Quinoneimides

In this work, an unprecedented and widely applicable strategy for the regioselective C-3 amination of indoles and C-2 amination of heteroarenes (pyrrole and benzofuran) is presented in a simple, high-efficiency way. This protocol is also one of the few methods for the efficient construction of C-N bonds of quinoneimides by the 1,6-addition reaction.

Ultrasound Accelerated Expedient and Eco-Friendly Synthesis of Aryl Sulfonates Using I2 As Catalyst At Ambient Conditions

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Aryl sulfonates were developed by ssing an energy-saving and eco-friendly approach, through ultrasound-assisted coupling reaction of readily sodium sulfinates with N-hydroxyphthalimide, under metal-free and mild conditions within 10 min at room temperature.

iAmideV-Deep: Valine Amidation Site Prediction in Proteins Using Deep Learning and Pseudo Amino Acid Compositions

Amidation is an important post translational modification where a peptide ends with an amide group (–NH2) rather than carboxyl group (–COOH). These amidated peptides are less sensitive to proteolytic degradation with extended half-life in the bloodstream. Amides are used in different industries like pharmaceuticals, natural products, and biologically active compounds. The in-vivo, ex-vivo, and in-vitro identification of amidation sites is a costly and time-consuming but important task to study the physiochemical properties of amidated peptides. A less costly and efficient alternative is to supplement wet lab experiments with accurate computational models. Hence, an urgent need exists for efficient and accurate computational models to easily identify amidated sites in peptides. In this study, we present a new predictor, based on deep neural networks (DNN) and Pseudo Amino Acid Compositions (PseAAC), to learn efficient, task-specific, and effective representations for valine amidation site identification. Well-known DNN architectures are used in this contribution to learn peptide sequence representations and classify peptide chains. Of all the different DNN based predictors developed in this study, Convolutional neural network-based model showed the best performance surpassing all other DNN based models and reported literature contributions. The proposed model will supplement in-vivo methods and help scientists to determine valine amidation very efficiently and accurately, which in turn will enhance understanding of the valine amidation in different biological processes.

Cu-Catalyzed Oxidative 3-Amination of Indoles via Formation of Indolyl(aryl)iodonium Imides Using o-Substituted (Diacetoxyiodo)arene as a High-Performance Hypervalent Iodine Compound

An oxidative 3-amination of indole derivatives using hypervalent iodine(III) and bissulfonimides, which proceeds via the formation of indolyl(aryl)iodonium imides, was developed. This reaction was followed by an indole-selective copper-catalyzed oxidative C–N coupling reaction to obtain 3-amino indole derivatives as single regioisomers. o-Alkoxy(diacetoxyiodo)arenes showed higher reactivity in the reaction than o-alkyl(diacetoxyiodo)arenes, efficiently promoting the formation of indolyl(aryl)iodonium imides in the first step.

Mechanistic insights and origin of chemoselectivity for S–O bond cleavage in dinitrobenzenesulfonic carbamates

A computational study on the NHC-catalyzed chemoselective S–O bond cleavage in dinitrobenzenesulfonic carbamates.

Electrochemically induced oxidative S–O coupling: synthesis of sulfonates from sulfonyl hydrazides and N-hydroxyimides or N-hydroxybenzotriazoles

A variety of sulfonates were synthesized from sulfonyl hydrazides and N-hydroxy compounds via electrochemically induced oxidative S–O bond formation.

Copper-Catalyzed Indole-Selective C-N Coupling Reaction of Indolyl(2-alkoxy-phenyl)iodonium Imides: Effect of Substituent on Iodoarene as Dummy Ligand

A monoalkoxy phenyl group as a dummy ligand on indolyl(aryl)iodonium imides, which is related to the N-I bonding hypervalent iodine(III) compound, for the copper-catalyzed indole-selective C-N coupling reaction was designed to provide 3-bissulfonimido-indole derivatives in high yields. In particular, the use of indolyl(2-butoxylphenyl)iodonium bissulfonimides indicated the high indole selectivity. Furthermore, this reaction was applied for the one-pot synthesis of 3-bissulfonimido-indole derivatives directly from indoles with bissulfonimides and (diacetoxyiodo)-2-butoxybenzene in the presence of Cu(MeCN)₄BF₄ catalyst.

N-Heterocyclic Carbene-Catalyzed Chemoselective S-O Bond Cleavage of Benzenesulfonic Carbamate

An unprecedented example of NHC-catalyzed chemoselective S-O bond cleavage of dinitrobenzenesulfonic carbamates is described. This protocol features several advantages, including mild reaction conditions, broad substrate scope, and operational simplicity, which allows it to be an attractive synthetic method for hydroxylamine synthesis. Notably, dinitrobenzenesulfonic carbamates not only work as "O" synthons but also serve as an efficient oxidant in this reaction.

The hydrogen atom transfer reactivity of sulfinic acids

Sulfinic acids (RSO2H) have a reputation for being difficult reagents due to their facile autoxidation. Nevertheless, they have recently been employed as key reagents in a variety of useful radical chain reactions. To account for this paradox and enable further development of radical reactions employing sulfinic acids, we have characterized the thermodynamics and kinetics of their H-atom transfer reactions for the first time. The O-H bond dissociation enthalpy (BDE) of sulfinic acids was determined by radical equilibration to be ∼78 kcal mol-1; roughly halfway between the RS-H BDE in thiols (∼87 kcal mol-1) and RSO-H BDE in sulfenic acids (∼70 kcal mol-1). Regardless, RSH, RSOH and RSO2H have relatively similar inherent H-atom transfer reactivity to alkyl radicals (∼106 M-1 s-1). Counter-intuitively, the trend in rate constants with more reactive alkoxyl radicals follows the reaction energetics: ∼108 M-1 s-1 for RSO2H, midway between thiols (∼107 M-1 s-1) and sulfenic acids (∼109 M-1 s-1). Importantly, since sulfinic and sulfenic acids are very strong H-bond donors (αH2 ∼ 0.63 and 0.55, respectively), their reactivity is greatly attenuated in H-bond accepting solvents, whereas the reactivity of thiols is largely solvent-independent. Efforts to measure rate constants for the reactions of sulfinic acids with alkylperoxyl radicals were unsuccessful. Computations predict these reactions to be surprisingly slow; ∼1000-times slower than for thiols and ∼10 000 000-times slower than for sulfenic acids. On the other hand, the reaction of sulfinic acids with sulfonylperoxyl radicals - which propagate sulfinic acid autoxidation - is predicted to be almost diffusion-controlled. In fact, the rate-determining step in sulfinic acid autoxidation, and the reason they can be used for productive chemistry, is the relatively slow reaction of propagating sulfonyl radicals with O2 (∼106 M-1 s-1).

A Simple and Broadly Applicable C-N Bond Forming Dearomatization Protocol Enabled by Bifunctional Amino Reagents

A C-N bond forming dearomatization protocol with broad scope is outlined. Specifically, bifunctional amino reagents are used for sequential nucleophilic and electrophilic C-N bond formations, with the latter effecting the key dearomatization step. Using this approach, γ-arylated alcohols are converted to a wide range of differentially protected spirocyclic pyrrolidines in just two or three steps.