1
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Pal S, Majumder S, Niyogi S, Shyamal P, Mondal D, Das B, Bisai A. Total synthesis of atropodiastereomers of heterodimeric Amaryllidaceae alkaloids: narcipavline and narcikachnine. Chem Sci 2024; 15:19851-19857. [PMID: 39568877 PMCID: PMC11575529 DOI: 10.1039/d4sc04361h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 10/30/2024] [Indexed: 11/22/2024] Open
Abstract
We report the first asymmetric total synthesis of recently isolated heterodimeric Amaryllidaceae alkaloids, narcipavlines A (1a) and B (1b), and narcikachnines A (2a) and B (2b), thereby confirming their absolute stereochemistry. These alkaloids showcase a unique heterodimeric structure, amalgamating two distinct types of Amaryllidaceae alkaloids: the cis-hydrodibenzofuran containing tetracyclic galantamine core (6a) and the galanthindole core (7) featuring a biaryl axis. The presence of this biaryl axis, coupled with the substantial galantamine core (6a) at the ortho substituents, imposes constraints on free rotation around the C-C axis, resulting in atropisomerism, an exceedingly rare phenomenon in nature. Key steps in the synthesis encompass the utilization of a one-pot double reductive amination approach for the establishment of C-N-C bonds to merge both the galantamine (6a) and galanthindole (7) cores. Additionally, the Mitsunobu reaction and intramolecular Heck cyclization have emerged as pivotal techniques for crafting the tricyclic hydrodibenzofuran core [(-)-13], incorporating an all-carbon quaternary stereogenic center.
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Affiliation(s)
- Souvik Pal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road Bhopal 462 066 Madhya Pradesh India
| | - Satyajit Majumder
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road Bhopal 462 066 Madhya Pradesh India
| | - Sovan Niyogi
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata Mohanpur Campus, Nadia Kalyani 741 246 West Bengal India
| | - Pranay Shyamal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata Mohanpur Campus, Nadia Kalyani 741 246 West Bengal India
| | - Debabrata Mondal
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata Mohanpur Campus, Nadia Kalyani 741 246 West Bengal India
| | - Bishnu Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata Mohanpur Campus, Nadia Kalyani 741 246 West Bengal India
| | - Alakesh Bisai
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road Bhopal 462 066 Madhya Pradesh India
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata Mohanpur Campus, Nadia Kalyani 741 246 West Bengal India
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2
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Wang F, Xu X, Yan Y, Zhang J, Bai WJ, Chen J, Yang Y. Diastereoselective Construction of Fused Carbocyclic Pyrrolidines via a Copper-Catalyzed [3 + 2] Cycloaddition: Total Syntheses of Pancratinines B-C. Org Lett 2023; 25:6853-6857. [PMID: 37682751 DOI: 10.1021/acs.orglett.3c02310] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/10/2023]
Abstract
A Cu-catalyzed diastereoselective [3 + 2] cycloaddition of 2-arylaziridines and cyclic silyl dienol ethers was developed to efficiently construct fused-[5,n] carbocyclic pyrrolidines, which are widespread in bioactive natural products. Mechanistic studies revealed that the high diastereoselectivity of this transformation arose from a sequential retro aza-Michael/epimerization/aza-Michael process. Taking advantage of this newly developed method, the first total syntheses of pancratinines B and C were concisely realized.
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Affiliation(s)
- Fang Wang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan, Hubei 430030, China
| | - Xiaohan Xu
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan, Hubei 430030, China
| | - Yangtian Yan
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan, Hubei 430030, China
| | - Jiayang Zhang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan, Hubei 430030, China
| | - Wen-Ju Bai
- Department of Chemistry, Stanford University Stanford, California 94305-5080, United States
| | - Jianwei Chen
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Yang Yang
- Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Huazhong University of Science and Technology, 13 Hangkong Road, Wuhan, Hubei 430030, China
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3
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Fan J, Wang Y, Hu X, Liu Y, Che CM. Iron porphyrin-catalysed C(sp 3)–H amination with alkyl azides for the synthesis of complex nitrogen-containing compounds. Org Chem Front 2023. [DOI: 10.1039/d2qo01972h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
With the readily prepared iron porphyrin complex as a catalyst and starting with alkyl azides, a panel of nitrogen-containing skeletons representing the families of natural alkaloids and bioactive compounds could be prepared in good yields.
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Affiliation(s)
- Jianqiang Fan
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, P. R. China
| | - Ye Wang
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, P. R. China
| | - Xuefu Hu
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, P. R. China
| | - Yungen Liu
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, P. R. China
| | - Chi-Ming Che
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, P. R. China
- State Key Laboratory of Synthetic Chemistry, Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China
- HKU Shenzhen Institute of Research and Innovation, Shenzhen, Guangdong 518057, P. R. China
- Laboratory for Synthetic Chemistry and Chemical Biology Limited, Units 1503-1511, 15/F, Building 17W, Hong Kong Science Park, New Territories, Hong Kong, China
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4
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Šafratová M, Křoustková J, Maafi N, Suchánková D, Vrabec R, Chlebek J, Kuneš J, Opletal L, Bucar F, Cahlíková L. Amaryllidaceae Alkaloids from Clivia miniata (Lindl.) Bosse (Amaryllidaceae): Isolation, Structural Elucidation, and Biological Activity. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11223034. [PMID: 36432763 PMCID: PMC9692855 DOI: 10.3390/plants11223034] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/04/2022] [Accepted: 11/07/2022] [Indexed: 06/01/2023]
Abstract
Clivia miniata (Amaryllidaceae) is an herbaceous evergreen flowering plant that is endemic to South Africa and Swaziland and belongs to one of the top-10 traded medicinal plants in informal medicine markets in South Africa. The species has been reported as the most important component of a traditional healer's pallet of healing plants. Eighteen known Amaryllidaceae alkaloids (AAs) of various structural types, and one undescribed alkaloid of homolycorine-type, named clivimine B (3), were isolated from Clivia miniata. The chemical structures of the isolated alkaloids were elucidated by a combination of MS, HRMS, 1D and 2D NMR techniques and by comparison with literature data. Compounds isolated in a sufficient quantity, and not tested previously, were evaluated for their in vitro acetylcholinesterase (AChE; E.C. 3.1.1.7) and butyrylcholinesterase (BuChE; E.C. 3.1.1.8) inhibition activities.
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Affiliation(s)
- Marcela Šafratová
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jana Křoustková
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Negar Maafi
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Daniela Suchánková
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Rudolf Vrabec
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jakub Chlebek
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jiří Kuneš
- Department of Bioorganic and Organic Chemistry, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Lubomír Opletal
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Franz Bucar
- Institute of Pharmaceutical Sciences, University of Graz, Beethovenstraße 8, 8010 Graz, Austria
| | - Lucie Cahlíková
- Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
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5
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Bailly C. Naming of new natural products: Standard, pitfalls and tips-and-tricks. PHYTOCHEMISTRY 2022; 200:113250. [PMID: 35598790 DOI: 10.1016/j.phytochem.2022.113250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 05/13/2022] [Accepted: 05/14/2022] [Indexed: 06/15/2023]
Abstract
Naming a newly discovered natural product (NP) is a pleasant but difficult exercise. In most cases, the NP name will be given with reference to the species of origin, be it a plant, a marine organism, a mammalian or microbial species. For a long time, the use of biologically-based trivial names has been recommended to identify the parental linkage between the product and the originating genus or species. But the recommendation is not always followed and a multiplicity of trivial names have been attributed to NP, based on locations (country, region, city), foods, music, animals, forenames, etc. Tips-and-tricks associated with the naming of NP are underlined here. Usually, NP are differentiated across a homogeneous chemical series with a letter (from the Latin or Greek alphabet), followed or not with a number. In other cases, the change of a single letter distinguishes a series of NP. Common pitfalls associated with the naming of NP are enumerated, including the complexity of names, use of synonyms, duplicated names, confusing names and inappropriate terminology. The difficulties regularly encountered with the naming of NP are discussed. Four essential recommendations are recalled: (i) a thorough analysis of the existing products to avoid duplicated names and confusion, (ii) the use of a biologically-based trivial name to retrace the origin of the product, (iii) the strict adherence to the codes of chemical nomenclature, and (iv) the preference for simple names to facilitate transmission. Naming a new NP is a rewarding task, which shall be performed with all due skill, care and diligence.
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Affiliation(s)
- Christian Bailly
- OncoWitan, Scientific Consulting Office, Lille, Wasquehal, 59290, France.
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6
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Majumder S, Yadav A, Pal S, Khatua A, Bisai A. Asymmetric Total Syntheses of (-)-Lycoramine, (-)-Lycoraminone, (-)-Narwedine, and (-)-Galanthamine. J Org Chem 2022; 87:7786-7797. [PMID: 35613361 DOI: 10.1021/acs.joc.2c00420] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A concise asymmetric total synthesis of naturally occurring Amaryllidaceae alkaloids sharing dihydrobenzofuran scaffolds, (-)-galanthamine (1a), (-)-lycoramine (1b), (-)-narwedine (2a), and (-)-lycoraminone (2b), is reported. Orthoester Johnson-Claisen rearrangement of allyl alcohol (+)-9 (98% ee) in diisopropylethylamine furnished enantioenriched cyclohexene (+)-8 (97.4% ee) with a quaternary stereogenic center.
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Affiliation(s)
- Satyajit Majumder
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Abhinay Yadav
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Souvik Pal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Arindam Khatua
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal 462 066, Madhya Pradesh, India
| | - Alakesh Bisai
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, Kalyani, Nadia 741 246, West Bengal, India
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7
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Babu KN, Pal S, Khatua A, Roy A, Bisai A. The catalytic decarboxylative allylation of enol carbonates: the synthesis of enantioenriched 3-allyl-3'-aryl 2-oxindoles and the core structure of azonazine. Org Biomol Chem 2021; 20:127-131. [PMID: 34897364 DOI: 10.1039/d1ob02048j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The catalytic asymmetric synthesis of 3-allyl-3'-aryl 2-oxindoles has been shown via the Pd(0)-catalyzed decarboxylative allylation of allylenol carbonates. This methodology provides access to a variety of 2-oxindole substrates (5a-v) with all-carbon quaternary stereocenters (up to 94% ee) at the pseudobenzylic position under additive-free and mild conditions. The synthetic potential of this method was shown by the asymmetric synthesis of the tetracyclic core of the diketopiparazine-based alkaloid azonazine (11).
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Affiliation(s)
- K Naresh Babu
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal - 462 066, Madhya Pradesh, India.
| | - Souvik Pal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal - 462 066, Madhya Pradesh, India.
| | - Arindam Khatua
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal - 462 066, Madhya Pradesh, India.
| | - Avishek Roy
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal - 462 066, Madhya Pradesh, India.
| | - Alakesh Bisai
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal - 462 066, Madhya Pradesh, India. .,Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, Nadia - 741246, West Bengal, India
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8
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Kundu S, Munda M, Nandi R, Bisai A. Pd(0)-Catalyzed Deacylative Allylations (DaA) Strategy and Application in the Total Synthesis of Alkaloids. CHEM REC 2021; 21:3818-3838. [PMID: 34796643 DOI: 10.1002/tcr.202100267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 10/29/2021] [Accepted: 10/29/2021] [Indexed: 11/12/2022]
Abstract
Natural product synthesis has been the prime focus for the development of new carbon-carbon bond forming transformations. In particular, the construction of molecules with all-carbon quaternary centers remain one of the most facinating targets. In this regard, transition-metal catalyzed processes have gained imporatnce owing to their mild nature. Towards this, Pd(0)-catalyzed decarboxylative allylations (DcA) is worth mentioning and has emerged as a convenient method for synthesis of molecules even in their enantioenriched form. However, in order to have a flexible approach that facilitate rapid production of derivatives by utilizing commercially available allyl alcohols, the concept of Pd(0)-catalyzed deacylative allylations (DaA) methodology gains popularity. In these reactions, the transfer of an acyl group has a functional role in activating the allylic alcohol (proelectrophile) toward reaction with Pd(0)-catalysts. We present here an Account on newly conceptualized deacylative allylations (DaA) methodology and its applications in the synthesis of various intermediates and building blocks. Further, its potential in the total synthesis of naturally occurring alkaloids have been summarized in this personal account.
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Affiliation(s)
- Sourav Kundu
- Department of Chemistry, Indian Institution of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, MP, India
| | - Mintu Munda
- Department of Chemistry, Indian Institution of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, MP, India
| | - Rhituparna Nandi
- Department of Chemistry, Indian Institution of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, MP, India
| | - Alakesh Bisai
- Department of Chemical Sciences, Indian Institution of Science Education and Research Kolkata Mohanpur Campus, Kalyani, Nadia, 741 246, WB, India
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9
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Buev EM, Smorodina AA, Moshkin VS, Sosnovskikh VY. 5-Aryloxazolidines as Reagents for Double Alkylation of Arenes: A Novel Synthesis of 4-Aryltetrahydroisoquinolines. J Org Chem 2021; 86:15307-15317. [PMID: 34591479 DOI: 10.1021/acs.joc.1c01881] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
5-Aryloxazolidines react with arenes under Lewis or Brønsted acid conditions via the Friedel-Crafts/Pictet-Spengler double alkylation sequence to give alkaloid-like 4-aryltetrahydroisoquinolines in 12-94% yields. Three approaches for the controlled insertion of substituents into the target molecules and application of oxazolidine derivatives such as 1-arylethanol-2-amines or 4-hydroxytetrahydroisoquinolines in the alkylation of arenes are also described. An unprecedented two-step easily scalable synthesis of the 4-aryltetrahydroisoquinoline core from aromatic aldehyde was achieved applying oxazolidine methodology.
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Affiliation(s)
- Evgeny M Buev
- Institute of Natural Sciences and Mathematics, Ural Federal University, 620000 Ekaterinburg, Russian Federation
| | - Anastasia A Smorodina
- Institute of Natural Sciences and Mathematics, Ural Federal University, 620000 Ekaterinburg, Russian Federation
| | - Vladimir S Moshkin
- Institute of Natural Sciences and Mathematics, Ural Federal University, 620000 Ekaterinburg, Russian Federation
| | - Vyacheslav Y Sosnovskikh
- Institute of Natural Sciences and Mathematics, Ural Federal University, 620000 Ekaterinburg, Russian Federation
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10
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Affiliation(s)
- Yi‐Ching Lin
- Department of Applied Chemistry National Yang Ming Chiao Tung University Hsinchu Taiwan
| | - Yen‐Ku Wu
- Department of Applied Chemistry National Yang Ming Chiao Tung University Hsinchu Taiwan
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11
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Hu N, White LV, Lan P, Banwell MG. The Chemical Synthesis of the Crinine and Haemanthamine Alkaloids: Biologically Active and Enantiomerically-Related Systems that Serve as Vehicles for Showcasing New Methodologies for Molecular Assembly. Molecules 2021; 26:molecules26030765. [PMID: 33540725 PMCID: PMC7867252 DOI: 10.3390/molecules26030765] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 01/14/2021] [Accepted: 01/15/2021] [Indexed: 11/16/2022] Open
Abstract
The title alkaloids, often referred to collectively as crinines, are a prominent group of structurally distinct natural products with additional members being reported on a regular basis. As such, and because of their often notable biological properties, they have attracted attention as synthetic targets since the mid-1950s. Such efforts continue unabated and more recent studies on these alkaloids have focused on using them as vehicles for showcasing the utility of new synthetic methods. This review provides a comprehensive survey of the nearly seventy-year history of these synthetic endeavors.
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12
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13
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Wang W, Dai J, Yang Q, Deng YH, Peng F, Shao Z. Palladium-Catalyzed Asymmetric Direct Intermolecular Allylation of α-Aryl Cyclic Vinylogous Esters: Divergent Synthesis of (+)-Oxomaritidine and (−)-Mesembrine. Org Lett 2021; 23:920-924. [DOI: 10.1021/acs.orglett.0c04125] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Wei Wang
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
| | - Jun Dai
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
| | - Qiqiong Yang
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
| | - Yu-Hua Deng
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
| | - Fangzhi Peng
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
| | - Zhihui Shao
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan Provincial Center for Research & Development of Natural Products, and School of Chemical Science and Technology, Yunnan University, Kunming 650091, China
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14
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Lianza M, Leroy R, Machado Rodrigues C, Borie N, Sayagh C, Remy S, Kuhn S, Renault JH, Nuzillard JM. The Three Pillars of Natural Product Dereplication. Alkaloids from the Bulbs of Urceolina peruviana (C. Presl) J.F. Macbr. as a Preliminary Test Case. Molecules 2021; 26:637. [PMID: 33530604 PMCID: PMC7865595 DOI: 10.3390/molecules26030637] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 01/20/2021] [Accepted: 01/22/2021] [Indexed: 12/18/2022] Open
Abstract
The role and importance of the identification of natural products are discussed in the perspective of the study of secondary metabolites. The rapid identification of already reported compounds, or structural dereplication, is recognized as a key element in natural product chemistry. The biological taxonomy of metabolite producing organisms, the knowledge of metabolite molecular structures, and the availability of metabolite spectroscopic signatures are considered as the three pillars of structural dereplication. The role and the construction of databases is illustrated by references to the KNApSAcK, UNPD, CSEARCH, and COCONUT databases, and by the importance of calculated taxonomic and spectroscopic data as substitutes for missing or lost original ones. Two NMR-based tools, the PNMRNP database that derives from UNPD, and KnapsackSearch, a database generator that provides taxonomically focused libraries of compounds, are proposed to the community of natural product chemists. The study of the alkaloids from Urceolina peruviana, a plant from the Andes used in traditional medicine for antibacterial and anticancer actions, has given the opportunity to test different approaches to dereplication, favoring the use of publicly available data sources.
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Affiliation(s)
- Mariacaterina Lianza
- Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy;
| | - Ritchy Leroy
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Carine Machado Rodrigues
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Nicolas Borie
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Charlotte Sayagh
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Simon Remy
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Stefan Kuhn
- School of Computer Science and Informatics, De Montfort University, Leicester LE1 9BH, UK;
| | - Jean-Hugues Renault
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
| | - Jean-Marc Nuzillard
- Université de Reims Champagne Ardenne, CNRS, ICMR UMR 7312, 51097 Reims, France; (R.L.); (C.M.R.); (N.B.); (C.S.); (S.R.); (J.-H.R.)
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15
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Kohelová E, Maříková J, Korábečný J, Hulcová D, Kučera T, Jun D, Chlebek J, Jenčo J, Šafratová M, Hrabinová M, Ritomská A, Malaník M, Peřinová R, Breiterová K, Kuneš J, Nováková L, Opletal L, Cahlíková L. Alkaloids of Zephyranthes citrina (Amaryllidaceae) and their implication to Alzheimer's disease: Isolation, structural elucidation and biological activity. Bioorg Chem 2020; 107:104567. [PMID: 33387730 DOI: 10.1016/j.bioorg.2020.104567] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 12/09/2020] [Accepted: 12/15/2020] [Indexed: 11/25/2022]
Abstract
Twenty known Amaryllidaceae alkaloids of various structural types, and one undescribed alkaloid of narcikachnine-type, named narcieliine (3), have been isolated from fresh bulbs of Zephyranthes citrina. The chemical structures of the isolated alkaloids were elucidated by a combination of MS, HRMS, 1D and 2D NMR, and CD spectroscopic techniques, and by comparison with literature data. The absolute configuration of narcieliine (3) has also been determined. Compounds isolated in a sufficient quantity were evaluated for their in vitro acetylcholinesterase (AChE; E.C. 3.1.1.7), butyrylcholinesterase (BuChE; E.C. 3.1.1.8), and prolyl oligopeptidase (POP; E.C. 3.4.21.26) inhibition activities. Significant human AChE/BuChE (hAChE/hBuChE) inhibitory activity was demonstrated by the newly described alkaloid narcieliine (3), with IC50 values of 18.7 ± 2.3 µM and 1.34 ± 0.31 µM, respectively. This compound is also predicted to cross the blood-brain barrier (BBB) through passive diffusion. The in vitro data were further supported by in silico studies of 3 in the active site of hAChE/hBuChE.
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Affiliation(s)
- Eliška Kohelová
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jana Maříková
- Department of Bioorganic and Organic Chemistry, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jan Korábečný
- Department of Toxicology and Military Pharmacy, Trebesska 1575, 500 05 Hradec Kralove, Czech Republic; Biomedical Research Centre, University Hospital Hradec Kralove, Sokolska 581, 500 05 Hradec Kralove, Czech Republic
| | - Daniela Hulcová
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic; Department of Pharmacognosy, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Tomáš Kučera
- Department of Toxicology and Military Pharmacy, Trebesska 1575, 500 05 Hradec Kralove, Czech Republic
| | - Daniel Jun
- Department of Toxicology and Military Pharmacy, Trebesska 1575, 500 05 Hradec Kralove, Czech Republic; Biomedical Research Centre, University Hospital Hradec Kralove, Sokolska 581, 500 05 Hradec Kralove, Czech Republic
| | - Jakub Chlebek
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jaroslav Jenčo
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Marcela Šafratová
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic; Department of Pharmacognosy, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Martina Hrabinová
- Department of Toxicology and Military Pharmacy, Trebesska 1575, 500 05 Hradec Kralove, Czech Republic; Biomedical Research Centre, University Hospital Hradec Kralove, Sokolska 581, 500 05 Hradec Kralove, Czech Republic
| | - Aneta Ritomská
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Milan Malaník
- Department of Natural Drugs, Faculty of Pharmacy, Masaryk University, Palackého třída 1946/1, 61200 Brno, Czech Republic
| | - Rozálie Peřinová
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Kateřina Breiterová
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Jiří Kuneš
- Department of Bioorganic and Organic Chemistry, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Lucie Nováková
- Department of Analytical Chemistry, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Lubomír Opletal
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic
| | - Lucie Cahlíková
- ADINACO Research Group, Department of Pharmaceutical Botany, Faculty of Pharmacy, Charles University, Heyrovskeho 1203, 500 05 Hradec Kralove, Czech Republic.
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16
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Wang Z. Palladium-catalyzed asymmetric dearomative cyclization in natural product synthesis. Org Biomol Chem 2020; 18:4354-4370. [PMID: 32459269 DOI: 10.1039/d0ob00818d] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
Abstract
Asymmetric catalysis is a rapidly growing field in modern organic chemistry and has been indispensable for the synthesis of enantioenriched materials to meet demands from the academies to pharmaceutical industries. Asymmetric dearomative cyclization catalyzed by transition metals has been a hot research area in the last decade. Fascinated by its ability to construct sterically hindered quaternary stereogenic center(s) through dearomatization and simultaneously forging new ring structure(s) through cyclization, palladium-catalyzed asymmetric dearomative cyclization has been applied to the synthesis of structurally complicated natural products and it is increasingly prevalent in the literature. In particular, the resultant product from dearomative cyclization, which usually carries one or more unsaturated C-C bond(s), allows further functional group transformations. Previously reported applications of palladium-catalyzed asymmetric dearomative cyclization in natural product synthesis are presented here and discussed in depth.
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Affiliation(s)
- Zhuo Wang
- Southern University of Science and Technology, School of Medicine, Shenzhen, 518055, People's Republic of China.
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17
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Kovács E, Huszka B, Gáti T, Nyerges M, Faigl F, Mucsi Z. Chemoselective Strategy for the Direct Formation of Tetrahydro-2,5-methanobenzo[ c]azepines or Azetotetrahydroisoquinolines via Regio- and Stereoselective Reactions. J Org Chem 2019; 84:7100-7112. [PMID: 31084024 DOI: 10.1021/acs.joc.9b00798] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The present study reports regio- and highly diastereoselective preparative methods for the synthesis of versatile alkaloid-type compounds from oxiranylmethyl tetrahydroisoquinolines. 2,5-Methanobenzo[ c]azepines or azetidine-fused heterocycles were synthesized in tandem reactions depending on the absence or presence of a BF3 co-reagent. A high functional group tolerance has also been demonstrated. DFT calculations with an explicit solvent model confirmed the proposed reaction mechanisms and the role of kinetic controls on the stereochemical outcome of the reported new methods.
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Affiliation(s)
- Ervin Kovács
- Department of Organic Chemistry and Technology , Budapest University of Technology and Economics , Budapest H-1111 Hungary.,Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences , Hungarian Academy of Sciences , Budapest H-1117 Hungary
| | - Balázs Huszka
- Department of Organic Chemistry and Technology , Budapest University of Technology and Economics , Budapest H-1111 Hungary
| | - Tamás Gáti
- Servier Research Institute of Medicinal Chemistry , Budapest H-1031 Hungary
| | - Miklós Nyerges
- Servier Research Institute of Medicinal Chemistry , Budapest H-1031 Hungary
| | - Ferenc Faigl
- Department of Organic Chemistry and Technology , Budapest University of Technology and Economics , Budapest H-1111 Hungary
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18
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Lan P, Banwell MG, Willis AC. Application of Electrocyclic Ring-Opening and Desymmetrizing Nucleophilic Trappings of meso-6,6-Dibromobicyclo[3.1.0]hexanes to Total Syntheses of Crinine and Haemanthamine Alkaloids. J Org Chem 2019; 84:3431-3466. [PMID: 30726669 DOI: 10.1021/acs.joc.9b00018] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The thermally induced electrocyclic ring-opening of C2-symmetric ( meso) 6,6-dibromobicyclo[3.1.0]hexanes such as 10 in the presence of the chiral, nonracemic 1°-amine 28 afforded a ca. 1:1 mixture of the diastereoisomeric and chromatographically separable 1-amino-2-bromo-2-cyclohexenes 37 (42%) and 38 (45%). Each of these was elaborated over 13 steps, including Suzuki-Miyaura cross-coupling, radical cyclization, and Pictet-Spengler reactions, into (-)- or (+)-crinane (1 or ent-1, respectively). Variations on these protocols were applied to the total syntheses of (+)- and (-)-11-hydroxyvattitine [(+)- and (-)-3], (+)- and (-)-bulbispermine [(+)- and (-)-4], (+)- and (-)-haemanthamine [(+)- and (-)-5], (+)- and (-)-pretazettine [(+)- and (-)-6], and (+)- and (-)-tazettine [(+)- and (-)-7] as well as (±)-hamayne [(±)-8] and (±)-apohaemanthamine [(±)-9]. A number of these alkaloids were synthesized for the first time.
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Affiliation(s)
- Ping Lan
- Institute for Advanced and Applied Chemical Synthesis , Jinan University , Zhuhai 519070 , China.,Department of Food Science and Engineering , Jinan University , Guangzhou 510632 , China
| | - Martin G Banwell
- Institute for Advanced and Applied Chemical Synthesis , Jinan University , Zhuhai 519070 , China.,Research School of Chemistry, Institute of Advanced Studies , The Australian National University , Canberra , ACT 2601 , Australia
| | - Anthony C Willis
- Research School of Chemistry, Institute of Advanced Studies , The Australian National University , Canberra , ACT 2601 , Australia
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19
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Shi Y, He H, Gao S. Recent advances in the total synthesis of gracilamine. Chem Commun (Camb) 2018; 54:12905-12913. [PMID: 30393793 DOI: 10.1039/c8cc07799a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Gracilamine belongs to the Amaryllidaceae alkaloid group and has a unique five-ring skeleton. Its scarcity in plants limits biological studies on it. A number of synthetic chemists have carried out the total synthesis of gracilamine in the past few years. This review will summarize the synthetic studies of gracilamine, and hopes to bring new inspiration to the research of Amaryllidaceae alkaloids.
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Affiliation(s)
- Yingbo Shi
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China.
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