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Pylova EK, Sukhikh TS, Prieto A, Jaroschik F, Konchenko SN. Chemistry of 2-(2'-Aminophenyl)benzothiazole Derivatives: Syntheses, Photophysical Properties and Applications. Molecules 2025; 30:1659. [PMID: 40333580 PMCID: PMC12029770 DOI: 10.3390/molecules30081659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2025] [Revised: 04/01/2025] [Accepted: 04/03/2025] [Indexed: 05/09/2025] Open
Abstract
2-(2'-aminophenyl)benzothiazole is a readily tunable fluorescent core with widespread applications in coordination chemistry, sensing, light-emitting processes, medicinal chemistry, and catalysis. This review provides an overview of the synthetic methodologies to access 2-(2'-aminophenyl)benzothiazole and its organic derivatives, including various phosphorous and silane pincer ligands. The luminescent properties will be discussed, with a special focus on ESIPT and AIE processes. The coordination of transition metals and lanthanides is presented, as well as their influence on biological and light-emitting properties. 2-(2'-aminophenyl)benzothiazole derivatives have also been employed as sensors for a range of cations and anions due to their various binding modes, as well as for bioimaging purposes. Recently, the first application in photocatalysis has emerged, showing one of the many openings for these organic building blocks in the future.
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Affiliation(s)
- Ekaterina K. Pylova
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia; (E.K.P.); (T.S.S.)
- Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia
- ICGM, Univ Montpellier, CNRS, ENSCM, 34090 Montpellier, France
| | - Taisiya S. Sukhikh
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia; (E.K.P.); (T.S.S.)
| | - Alexis Prieto
- ICGM, Univ Montpellier, CNRS, ENSCM, 34090 Montpellier, France
| | | | - Sergey N. Konchenko
- Nikolaev Institute of Inorganic Chemistry, Siberian Branch of the Russian Academy of Sciences, 3 Lavrentiev Ave., 630090 Novosibirsk, Russia; (E.K.P.); (T.S.S.)
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2
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Welsh A, Husbands D, Frei A. High-Throughput Combinatorial Metal Complex Synthesis. Angew Chem Int Ed Engl 2025; 64:e202420204. [PMID: 39714355 DOI: 10.1002/anie.202420204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Revised: 12/17/2024] [Accepted: 12/20/2024] [Indexed: 12/24/2024]
Abstract
High-throughput combinatorial metal complex synthesis has emerged as a powerful tool for rapidly generating and screening diverse libraries of metal complexes, enabling accelerated discovery in fields such as catalysis, medicinal chemistry, and materials science. By systematically combining building blocks under mild and efficient conditions, researchers can explore broad chemical spaces, increasing the likelihood of identifying complexes with desired properties. This method streamlines hit identification and optimisation, especially when integrated with high-throughput screening and data-driven approaches like machine learning. Despite challenges such as scalability and purity control, recent advancements in automation and predictive modelling are enhancing the efficiency of combinatorial synthesis, opening new avenues for the development of metal-based catalysts, therapeutic agents, and functional materials.
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Affiliation(s)
- A Welsh
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
- Department of Chemistry, University of York, York, YO10 5DD, U.K
| | - D Husbands
- Department of Chemistry, University of York, York, YO10 5DD, U.K
| | - A Frei
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
- Department of Chemistry, University of York, York, YO10 5DD, U.K
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3
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Niemeier F, Servos LM, Papadopoulos Z, Montesdeoca N, Ni K, Heinrich S, Karges J. Combinatorial Synthesis toward the Discovery of Highly Cytotoxic Fe(III) Complexes. J Med Chem 2025; 68:1316-1327. [PMID: 39680634 DOI: 10.1021/acs.jmedchem.4c01875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2024]
Abstract
Cancer remains one of the deadliest diseases worldwide, with some tumors proving difficult to treat and increasingly resistant to current therapies. Capitalizing on this, there is a need for new therapeutic agents with novel mechanisms of action. Among promising candidates, Fe(III) complexes have gained significant attention as potential chemotherapeutic agents. However, research on these compounds has been limited to a small number, leading to inefficiencies in drug discovery. This study addresses these limitations by developing a combinatorial library of 495 new Fe(III) complexes synthesized from aminophenol, hydroxybenzaldehyde, and pyridine derivatives. The compounds were screened for cytotoxicity against human breast adenocarcinoma and noncancerous fibroblasts, identifying a novel class of Fe(III) complexes with modest cancer cell selectivity. The lead compound effectively eradicated breast cancer tumor spheroids at low micromolar concentrations, highlighting the potential of this approach for rapid drug discovery.
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Affiliation(s)
- Felix Niemeier
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Lisa-Marie Servos
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Zisis Papadopoulos
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Nicolás Montesdeoca
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Kaixin Ni
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
| | - Sascha Heinrich
- Applied Microbiology, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany
| | - Johannes Karges
- Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
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4
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Pylova E, Lasorne B, McClenaghan ND, Jonusauskas G, Taillefer M, Konchenko SN, Prieto A, Jaroschik F. Visible-Light Organic Photosensitizers Based on 2-(2-Aminophenyl)benzothiazoles for Photocycloaddition Reactions. Chemistry 2024; 30:e202401851. [PMID: 39011924 DOI: 10.1002/chem.202401851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Revised: 07/04/2024] [Accepted: 07/15/2024] [Indexed: 07/17/2024]
Abstract
We have studied 2-(2-aminophenyl)benzothiazole and related derivatives for their photophysical properties in view of employing them as new and readily tunable organic photocatalysts. Their triplet energies were estimated by DFT calculations to be in the range of 52-57 kcal mol-1, suggesting their suitability for the [2+2] photocycloaddition of unsaturated acyl imidazoles with styrene derivatives. Experimental studies have shown that 2-(2-aminophenyl)benzothiazoles comprising alkylamino groups (NHMe, NHiPr) or the native amino group provide the best photocatalytic results in these visible-light mediated [2+2] reactions without the need of any additives, yielding a range of cyclobutane derivatives. A combined experimental and theoretical approach has provided insights into the underlying triplet-triplet energy transfer process.
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Affiliation(s)
- Ekaterina Pylova
- ICGM, Univ Montpellier, CNRS, ENSCM, 34090, Montpellier, France
- Nikolaev Institute of Inorganic Chemistry SB RAS, Prosp. Lavrentieva 3, 630090, Novosibirsk, Russia
- Department of Natural Sciences, National Research University-Novosibirsk State, 630090, Novosibirsk, Russia
| | | | - Nathan D McClenaghan
- Université Bordeaux, CNRS, Bordeaux INP, ISM, UMR 5255, Talence, F-33400, France
| | - Gediminas Jonusauskas
- Laboratoire Ondes et Matières d'Aquitaine, Université Bordeaux, CNRS, Bordeaux INP, LOMA, UMR 5255, Talence, F-33400, France
| | - Marc Taillefer
- ICGM, Univ Montpellier, CNRS, ENSCM, 34090, Montpellier, France
| | - Sergey N Konchenko
- Nikolaev Institute of Inorganic Chemistry SB RAS, Prosp. Lavrentieva 3, 630090, Novosibirsk, Russia
| | - Alexis Prieto
- ICGM, Univ Montpellier, CNRS, ENSCM, 34090, Montpellier, France
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Tatarin SV, Bezzubov SI. Synthesis, Structure, and Properties of Nontrivial Iridium(III) Complexes Based on Anthracene-Decorated Benzimidazole Ligand. Inorg Chem 2024; 63:18642-18654. [PMID: 39321335 DOI: 10.1021/acs.inorgchem.4c02414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2024]
Abstract
Reactions of iridium trichloride hydrate with bulky 2-(9-anthracenyl)-1-phenyl-benzimidazole (anbi) in the presence of N-donor ligands afforded a number of unique noncyclometalated complexes, while attempts to prepare a common μ-chloro-bridged bis-cyclometalated dimer systematically gave a monocyclometalated complex cis-[Ir(C,N-anbi)(N-anbi)Cl2] instead. The obtained complexes were characterized by 1H NMR, high-resolution mass spectrometry, single-crystal and powder X-ray diffraction, UV-vis spectroscopy, and cyclic voltammetry. The noncyclometalated complexes fac-[Ir(N-anbi)(N^N)Cl3)], where N^N are 4,4'-disubstituted 2,2'-bipyridines, are octahedral and contain the anthracene and 2,2'-bipyridine units in a close cofacial arrangement. These complexes were found to be exceptionally inert to the chloride ligand exchange even in the presence of silver triflate, forming a rare trinuclear Ir-μ-Cl3-Ag-μ-Cl3-Ir structure instead. In the monocyclometalated complex, the Ir(III) ion is pentacoordinated in a rare square-pyramidal geometry, where the bulky anthracene fragment is involved in the steric shielding of the metal center. This is in line with the results of gas-phase density functional theory calculations, demonstrating that the experimentally observed structure is energetically most preferable. The monocyclometalated complex is deeply colored due to intense charge-transfer absorption bands in the range 450-650 nm with ε = 2000-5000 M-1 cm-1, superior to the noncyclometalated complexes. The synthesis, structures, and properties of the new complexes are discussed in the context of the related mono-, bis-, and noncyclometalated iridium(III) compounds.
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Affiliation(s)
- Sergei V Tatarin
- N. S. Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Moscow 119991, Russia
| | - Stanislav I Bezzubov
- N. S. Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Moscow 119991, Russia
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6
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Draper F, DiLuzio S, Sayre HJ, Pham LN, Coote ML, Doeven EH, Francis PS, Connell TU. Maximizing Photon-to-Electron Conversion for Atom Efficient Photoredox Catalysis. J Am Chem Soc 2024; 146:26830-26843. [PMID: 39302225 DOI: 10.1021/jacs.4c07396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/22/2024]
Abstract
Photoredox catalysis is a powerful tool to access challenging and diverse syntheses. Absorption of visible light forms the excited state catalyst (*PC) but photons may be wasted if one of several unproductive pathways occur. Facile dissociation of the charge-separated encounter complex [PC•-:D•+], also known as (solvent) cage escape, is required for productive chemistry and directly governs availability of the critical PC•- intermediate. Competitive charge recombination, either inside or outside the solvent cage, may limit the overall efficiency of a photochemical reaction or internal quantum yield (defined as the moles of product formed per mole of photons absorbed by PC). Measuring the cage escape efficiency (ϕCE) typically requires time-resolved spectroscopy; however, we demonstrate how to estimate ϕCE using steady-state techniques that measure the efficiency of PC•- formation (ϕPC). Our results show that choice of electron donor critically impacts ϕPC, which directly correlates to improved synthetic and internal quantum yields. Furthermore, we demonstrate how modest structural differences between photocatalysts may afford a sizable effect on reactivity due to changes in ϕPC, and by extension ϕCE. Optimizing experimental conditions for cage escape provides photochemical reactions with improved atom economy and energy input, paving the way for sustainable design of photocatalytic systems.
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Affiliation(s)
- Felicity Draper
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Stephen DiLuzio
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Hannah J Sayre
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, United States
| | - Le Nhan Pham
- Institute for Nanoscale Science and Technology, Flinders University, Adelaide, South Australia 5042, Australia
| | - Michelle L Coote
- Institute for Nanoscale Science and Technology, Flinders University, Adelaide, South Australia 5042, Australia
| | - Egan H Doeven
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Paul S Francis
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Timothy U Connell
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
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7
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DiLuzio S, Baumer M, Guzman R, Kagalwala H, Lopato E, Talledo S, Kangas J, Bernhard S. Exploring the Photophysics and Photocatalytic Activity of Heteroleptic Rh(III) Transition-Metal Complexes Using High-Throughput Experimentation. Inorg Chem 2024; 63:14267-14277. [PMID: 39031763 PMCID: PMC11304382 DOI: 10.1021/acs.inorgchem.4c02420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/08/2024] [Accepted: 07/11/2024] [Indexed: 07/22/2024]
Abstract
High-throughput synthesis and screening (HTSS) methods were used to investigate the photophysical properties of 576 heteroleptic Rh(III) transition-metal complexes through measurement of the UV-visible absorption spectra, deaerated excited-state lifetime, and phosphorescent emission spectra. While 4d transition-metal photophysics are often highly influenced by deleterious metal-centered deactivation channels, the HTSS of structurally diverse cyclometalating and ancillary ligands attached to the metal center facilitated the discovery of photoactive complexes exhibiting long-lived charge-transfer phosphorescence (0.15-0.95 μs) spanning a substantial portion of the visible region (546-620 nm) at room temperature. Further photophysical and electrochemical investigations were then carried out on select complexes with favorable photophysics to understand the underlying features controlling these superior properties. Heteroleptic Ir(III) complexes with identical ligand morphology were also synthesized to compare these features to this family of well understood chromophores. A number of these Rh(III) complexes contained the requisite properties for photocatalytic activity and were consequently tested as photocatalysts (PCs) in a water reduction system using a Pd water reduction cocatalyst. Under certain conditions, the activity of the Rh(III) PC actually surpassed that of the Ir(III) PC, uncovering the potential of this often-overlooked class of transition metals as both efficient photoactive chromophores and PCs.
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Affiliation(s)
- Stephen DiLuzio
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Mitchell Baumer
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Rafael Guzman
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Husain Kagalwala
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Eric Lopato
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Savannah Talledo
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Joshua Kangas
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Stefan Bernhard
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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8
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Li X, Che Y, Chen L, Liu T, Wang K, Liu L, Yang H, Pyzer-Knapp EO, Cooper AI. Sequential closed-loop Bayesian optimization as a guide for organic molecular metallophotocatalyst formulation discovery. Nat Chem 2024; 16:1286-1294. [PMID: 38862641 PMCID: PMC11321994 DOI: 10.1038/s41557-024-01546-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 04/29/2024] [Indexed: 06/13/2024]
Abstract
Conjugated organic photoredox catalysts (OPCs) can promote a wide range of chemical transformations. It is challenging to predict the catalytic activities of OPCs from first principles, either by expert knowledge or by using a priori calculations, as catalyst activity depends on a complex range of interrelated properties. Organic photocatalysts and other catalyst systems have often been discovered by a mixture of design and trial and error. Here we report a two-step data-driven approach to the targeted synthesis of OPCs and the subsequent reaction optimization for metallophotocatalysis, demonstrated for decarboxylative sp3-sp2 cross-coupling of amino acids with aryl halides. Our approach uses a Bayesian optimization strategy coupled with encoding of key physical properties using molecular descriptors to identify promising OPCs from a virtual library of 560 candidate molecules. This led to OPC formulations that are competitive with iridium catalysts by exploring just 2.4% of the available catalyst formulation space (107 of 4,500 possible reaction conditions).
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Affiliation(s)
- Xiaobo Li
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Zhejiang Key Laboratory for Reactive Chemistry on Solid Surfaces, Zhejiang Normal University, Jinhua, China.
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK.
| | - Yu Che
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK
- Leverhulme Research Centre for Functional Materials Design, University of Liverpool, Liverpool, UK
| | - Linjiang Chen
- School of Chemistry and School of Computer Science, University of Birmingham, Birmingham, UK.
| | - Tao Liu
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK
| | - Kewei Wang
- Department of Chemistry and Chemical Engineering, Shanxi Datong University, Datong, China
| | - Lunjie Liu
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK
| | - Haofan Yang
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK
- Leverhulme Research Centre for Functional Materials Design, University of Liverpool, Liverpool, UK
| | | | - Andrew I Cooper
- Materials Innovation Factory and Department of Chemistry, University of Liverpool, Liverpool, UK.
- Leverhulme Research Centre for Functional Materials Design, University of Liverpool, Liverpool, UK.
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Kim D, Teets TS. Sterically Encumbered Aryl Isocyanides Extend Excited-State Lifetimes and Improve the Photocatalytic Performance of Three-Coordinate Copper(I) β-Diketiminate Charge-Transfer Chromophores. J Am Chem Soc 2024. [PMID: 38853542 DOI: 10.1021/jacs.4c05180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Copper(I) complexes are prominent candidates to replace noble metal-based photosensitizers. We recently introduced a three-coordinate design for copper(I) charge-transfer chromophores that pair β-diketiminate ligands with aryl isocyanides. The excited-state lifetime in these compounds can be extended using a bichromophoric "triplet reservoir" strategy, which comes at the expense of a decrease in excited-state energy and reducing power. In this work, we introduce a complementary, sterically driven strategy for increasing the excited-state lifetimes of these photosensitizers, which gives a higher-energy, more strongly reducing charge-transfer triplet state than does the bichromophore approach. The compounds presented (Cu1-Cu4) have the general formula Cu(CyNacNacMe)(CN-Ar), where CyNacNacMe is a cyclohexyl-substituted β-diketiminate and CN-Ar is an aryl isocyanide with a variable steric profile. Their structural features and electrochemical and photophysical properties are described. The complexes with sterically encumbered 2,6-diisopropylphenyl or m-terphenyl isocyanide ligands (Cu2-Cu4) exhibit prolonged excited-state lifetimes relative to those of the parent 2,6-dimethylphenyl isocyanide compound Cu1. Specifically, one of the m-terphenyl isocyanide compounds, Cu3, displays an excited-state lifetime of 276 ns, approximately 30 times longer than that of Cu1 (9.3 ns). The photoluminescence quantum yield of Cu3 (0.09) also increases by two orders of magnitude compared to that of Cu1 (0.0008). The strong excited-state reducing power (*Eox = -2.4 V vs Fc+/0) and long lifetime of Cu3 lead to higher yields in photoredox and photocatalytic isomerization reactions, which include dehalogenation and/or hydrodgenation of benzophenone substrates, C-O bond activation of a lignin model substrate, and photocatalytic E/Z isomerization of stilbene.
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Affiliation(s)
- Dooyoung Kim
- Department of Chemistry, University of Houston, Houston, Texas 77204, United States
| | - Thomas S Teets
- Department of Chemistry, University of Houston, Houston, Texas 77204, United States
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10
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Young YA, Nguyen HTH, Nguyen HD, Ganguly T, Nguyen YH, Do LH. A ratiometric substrate for rapid evaluation of transfer hydrogenation efficiency in solution. Dalton Trans 2024; 53:8887-8892. [PMID: 38757518 PMCID: PMC11160331 DOI: 10.1039/d4dt00891j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
A cyclometalated iridium(III) complex bearing a self-immolative quinolinium moiety was developed as a ratiometric substrate for transfer hydrogenation studies. This photoluminescent probe allowed the rapid screening of a variety of Ir catalysts using a microplate reader, offering a convenient method to assess activity using a minimum amount of catalyst sample.
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Affiliation(s)
- Yen-An Young
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
| | - Huong T H Nguyen
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
| | - Hieu D Nguyen
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
| | - Tuhin Ganguly
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
| | - Yennie H Nguyen
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
| | - Loi H Do
- Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.
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11
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Mishra S, Patra S. Aqueous emissive cyclometalated iridium photoreductants: synthesis, computational analysis and the photocatalytic reduction of 4-nitrophenol. Dalton Trans 2024; 53:8214-8222. [PMID: 38618673 DOI: 10.1039/d4dt00766b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
Herein, we present luminescent mononuclear iridium complexes [1]3+-[4]3+ using NEt3-appended C^N chelating benzimidazole (L1-L4) and semi-flexible phenanthroline-pyrazine-based (phpy) ligands exhibiting photocatalytic reduction of 4-nitrophenol (4-NP) in the presence of NEt3 in an aqueous medium. The formation of [1]3+-[4]3+ was confirmed by HRMS, 1H-1H COSY, and 13C and 19F NMR spectroscopy. The complex [4]3+ is water soluble, whereas the others ([1]3+-[3]3+) are partially soluble. The complexes are luminescent in both CH3CN and H2O media. The DFT study reveals that the HOMO of [1]3+ resides on the C^N chelating benzimidazole and iridium center. However, it moves to the pyrazine-pyridine of the phpy unit in the case of [2]3+-[4]3+. The LUMOs are localized on the phenanthroline unit of phpy for all the complexes. This suggests an important role of the fluorine atom on electron density distribution. Spin density analysis demonstrates that the emission bands of the complexes arise from 3MLLCT states. The complex [4]3+ displays promising photocatalytic activity towards 4-NP photoreduction, whereas complexes [1]3+-[3]3+ exhibit lower reactivity. The mechanistic study suggests that the reaction proceeds through an oxidative quenching pathway, where 4-NP is reduced by accepting an electron from excited [Ir(III)] and gets oxidized to Ir(IV), which comes back to its original Ir(III) state by accepting an electron from the sacrificial electron donor NEt3.
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Affiliation(s)
- Saumyaranjan Mishra
- School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Argul, Jatni, Odisha-752050, India.
| | - Srikanta Patra
- School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Argul, Jatni, Odisha-752050, India.
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12
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Scaccaglia M, Birbaumer MP, Pinelli S, Pelosi G, Frei A. Discovery of antibacterial manganese(i) tricarbonyl complexes through combinatorial chemistry. Chem Sci 2024; 15:3907-3919. [PMID: 38487233 PMCID: PMC10935722 DOI: 10.1039/d3sc05326a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 01/23/2024] [Indexed: 03/17/2024] Open
Abstract
The continuous rise of antimicrobial resistance is a serious threat to human health and already causing hundreds of thousands of deaths each year. While natural products and synthetic organic small molecules have provided the majority of our current antibiotic arsenal, they are falling short in providing new drugs with novel modes of action able to treat multidrug resistant bacteria. Metal complexes have recently shown promising results as antimicrobial agents, but the number of studied compounds is still vanishingly small, making it difficult to identify promising compound classes or elucidate structure-activity relationships. To accelerate the pace of discovery we have applied a combinatorial chemistry approach to the synthesis of metalloantibiotics. Utilizing robust Schiff-base chemistry and combining 7 picolinaldehydes with 10 aniline derivatives, and 6 axial ligands, either imidazole/pyridine-based or solvent, we have prepared a library of 420 novel manganese tricarbonyl complexes. All compounds were evaluated for their antibacterial properties and 10 lead compounds were identified, re-synthesised and fully characterised. All 10 compounds showed high and broad activity against Gram-positive bacteria. The best manganese complex displayed low toxicity against human cells with a therapeutic index of >100. In initial mode of action studies, we show that it targets the bacterial membrane without inducing pore formation or depolarisation. Instead, it releases its carbon monoxide ligands around the membrane and inhibits the bacterial respiratory chain. This work demonstrates that large numbers of metal complexes can be accessed through combinatorial synthesis and evaluated for their antibacterial potential, allowing for the rapid identification of promising metalloantibiotic lead compounds.
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Affiliation(s)
- Mirco Scaccaglia
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma 43124 Parma Italy
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern Freiestrasse 3 3012 Bern Switzerland
| | - Michael P Birbaumer
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern Freiestrasse 3 3012 Bern Switzerland
| | - Silvana Pinelli
- Department of Medicine and Surgery, University of Parma Via Gramsci 14 43126 Parma Italy
| | - Giorgio Pelosi
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma 43124 Parma Italy
| | - Angelo Frei
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern Freiestrasse 3 3012 Bern Switzerland
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13
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Voinarovska V, Kabeshov M, Dudenko D, Genheden S, Tetko IV. When Yield Prediction Does Not Yield Prediction: An Overview of the Current Challenges. J Chem Inf Model 2024; 64:42-56. [PMID: 38116926 PMCID: PMC10778086 DOI: 10.1021/acs.jcim.3c01524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 11/29/2023] [Accepted: 11/30/2023] [Indexed: 12/21/2023]
Abstract
Machine Learning (ML) techniques face significant challenges when predicting advanced chemical properties, such as yield, feasibility of chemical synthesis, and optimal reaction conditions. These challenges stem from the high-dimensional nature of the prediction task and the myriad essential variables involved, ranging from reactants and reagents to catalysts, temperature, and purification processes. Successfully developing a reliable predictive model not only holds the potential for optimizing high-throughput experiments but can also elevate existing retrosynthetic predictive approaches and bolster a plethora of applications within the field. In this review, we systematically evaluate the efficacy of current ML methodologies in chemoinformatics, shedding light on their milestones and inherent limitations. Additionally, a detailed examination of a representative case study provides insights into the prevailing issues related to data availability and transferability in the discipline.
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Affiliation(s)
- Varvara Voinarovska
- Molecular
AI, Discovery Sciences R&D, AstraZeneca, 431 83 Gothenburg, Sweden
- TUM
Graduate School, Faculty of Chemistry, Technical
University of Munich, 85748 Garching, Germany
| | - Mikhail Kabeshov
- Molecular
AI, Discovery Sciences R&D, AstraZeneca, 431 83 Gothenburg, Sweden
| | - Dmytro Dudenko
- Enamine
Ltd., 78 Chervonotkatska str., 02094 Kyiv, Ukraine
| | - Samuel Genheden
- Molecular
AI, Discovery Sciences R&D, AstraZeneca, 431 83 Gothenburg, Sweden
| | - Igor V. Tetko
- Molecular
Targets and Therapeutics Center, Helmholtz Munich − Deutsches
Forschungszentrum für Gesundheit und Umwelt (GmbH), Institute of Structural Biology, 85764 Neuherberg, Germany
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14
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Lee J, Song WJ. Photocatalytic C-O Coupling Enzymes That Operate via Intramolecular Electron Transfer. J Am Chem Soc 2023; 145:5211-5221. [PMID: 36825656 DOI: 10.1021/jacs.2c12226] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Efficient and environmentally friendly conversion of light energy for direct utilization in chemical production has been a long-standing goal in enzyme design. Herein, we synthesized artificial photocatalytic enzymes by introducing an Ir photocatalyst and a Ni(bpy) complex to an optimal protein scaffold in close proximity. Consequently, the enzyme generated C-O coupling products with up to 96% yields by harvesting visible light and performing intramolecular electron transfer between the two catalysts. We systematically modulated the catalytic activities of the artificial photocatalytic cross-coupling enzymes by tuning the electrochemical properties of the catalytic components, their positions, and distances within a protein. As a result, we discovered the best-performing mutant that showed broad substrate scopes under optimized conditions. This work explicitly demonstrated that we could integrate and control both the inorganic and biochemical components of photocatalytic biocatalysis to achieve high yield and selectivity in valuable chemical transformations.
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Affiliation(s)
- Jaehee Lee
- Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 08826, Republic of Korea
| | - Woon Ju Song
- Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul 08826, Republic of Korea
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15
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Ruan Y, Lin S, Mo Y. AROPS: A Framework of Automated Reaction Optimization with Parallelized Scheduling. J Chem Inf Model 2023; 63:770-781. [PMID: 36653913 DOI: 10.1021/acs.jcim.2c01168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
With the development of automated experimental platforms and optimization algorithms, chemists can easily optimize chemical reactions in an automated and high-throughput fashion. However, the modules in existing automated experimental platforms are operated in a linear fashion without orchestrating with the optimization algorithm, thus leaving room for further efficiency improvement. Here, we introduced a framework of automated reaction optimization with parallelized scheduling (AROPS) to realize the integration of the optimization algorithm and module scheduling. AROPS relies on a customized Bayesian optimizer to solve multi-reactor/analyzer reaction optimization problems with three different scheduling modes to arrange tasks for various experimental modules. In addition, a mechanism based on probability of improvement (PI) for discarding unpromising ongoing experiments was developed to facilitate freeing up valuable experimental resources in parallelized optimization. We tested the performance of AROPS using a hardware emulator on three representative benchmark reactions encountered in organic synthesis, illustrating that AROPS can trade off optimization time and cost according to the chemists' preference.
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Affiliation(s)
- Yixiang Ruan
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou310027, China.,ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou311215, China
| | - Sen Lin
- Shanghai ChemLex Technology Co., Ltd., Shanghai201210, China
| | - Yiming Mo
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou310027, China.,ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou311215, China
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16
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Terrones GG, Duan C, Nandy A, Kulik HJ. Low-cost machine learning prediction of excited state properties of iridium-centered phosphors. Chem Sci 2023; 14:1419-1433. [PMID: 36794185 PMCID: PMC9906783 DOI: 10.1039/d2sc06150c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 01/05/2023] [Indexed: 01/07/2023] Open
Abstract
Prediction of the excited state properties of photoactive iridium complexes challenges ab initio methods such as time-dependent density functional theory (TDDFT) both from the perspective of accuracy and of computational cost, complicating high-throughput virtual screening (HTVS). We instead leverage low-cost machine learning (ML) models and experimental data for 1380 iridium complexes to perform these prediction tasks. We find the best-performing and most transferable models to be those trained on electronic structure features from low-cost density functional tight binding calculations. Using artificial neural network (ANN) models, we predict the mean emission energy of phosphorescence, the excited state lifetime, and the emission spectral integral for iridium complexes with accuracy competitive with or superseding that of TDDFT. We conduct feature importance analysis to determine that high cyclometalating ligand ionization potential correlates to high mean emission energy, while high ancillary ligand ionization potential correlates to low lifetime and low spectral integral. As a demonstration of how our ML models can be used for HTVS and the acceleration of chemical discovery, we curate a set of novel hypothetical iridium complexes and use uncertainty-controlled predictions to identify promising ligands for the design of new phosphors while retaining confidence in the quality of the ANN predictions.
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Affiliation(s)
- Gianmarco G Terrones
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Chenru Duan
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
- Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Aditya Nandy
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
- Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology Cambridge MA 02139 USA
- Department of Chemistry, Massachusetts Institute of Technology Cambridge MA 02139 USA
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17
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Khondaker RM, Gow S, Kanza S, Frey JG, Niranjan M. Robustness under parameter and problem domain alterations of Bayesian optimization methods for chemical reactions. J Cheminform 2022; 14:59. [PMID: 36050750 PMCID: PMC9434872 DOI: 10.1186/s13321-022-00641-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 08/22/2022] [Indexed: 11/10/2022] Open
Abstract
The related problems of chemical reaction optimization and reaction scope search concern the discovery of reaction pathways and conditions that provide the best percentage yield of a target product. The space of possible reaction pathways or conditions is too large to search in full, so identifying a globally optimal set of conditions must instead draw on mathematical methods to identify areas of the space that should be investigated. An intriguing contribution to this area of research is the recent development of the Experimental Design for Bayesian optimization (EDBO) optimizer [1]. Bayesian optimization works by building an approximation to the true function to be optimized based on a small set of simulations, and selecting the next point (or points) to be tested based on an acquisition function reflecting the value of different points within the input space. In this work, we evaluated the robustness of the EDBO optimizer under several changes to its specification. We investigated the effect on the performance of the optimizer of altering the acquisition function and batch size, applied the method to other existing reaction yield data sets, and considered its performance in the new problem domain of molecular power conversion efficiency in photovoltaic cells. Our results indicated that the EDBO optimizer broadly performs well under these changes; of particular note is the competitive performance of the computationally cheaper acquisition function Thompson Sampling when compared to the original Expected Improvement function, and some concerns around the method’s performance for “incomplete” input domains.
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Affiliation(s)
| | - Stephen Gow
- Department of Chemistry, University of Southampton, Southampton, UK.
| | - Samantha Kanza
- Department of Chemistry, University of Southampton, Southampton, UK
| | - Jeremy G Frey
- Department of Chemistry, University of Southampton, Southampton, UK
| | - Mahesan Niranjan
- Department of Electronics and Computer Science, University of Southampton, Southampton, UK
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18
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When machine learning meets molecular synthesis. TRENDS IN CHEMISTRY 2022. [DOI: 10.1016/j.trechm.2022.07.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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20
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Widness JK, Enny DG, McFarlane-Connelly KS, Miedenbauer MT, Krauss TD, Weix DJ. CdS Quantum Dots as Potent Photoreductants for Organic Chemistry Enabled by Auger Processes. J Am Chem Soc 2022; 144:12229-12246. [PMID: 35772053 DOI: 10.1021/jacs.2c03235] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Strong reducing agents (<-2.0 V vs saturated calomel electrode (SCE)) enable a wide array of useful organic chemistry, but suffer from a variety of limitations. Stoichiometric metallic reductants such as alkali metals and SmI2 are commonly employed for these reactions; however, considerations including expense, ease of use, safety, and waste generation limit the practicality of these methods. Recent approaches utilizing energy from multiple photons or electron-primed photoredox catalysis have accessed reduction potentials equivalent to Li0 and shown how this enables selective transformations of aryl chlorides via aryl radicals. However, in some cases, low stability of catalytic intermediates can limit turnover numbers. Herein, we report the ability of CdS nanocrystal quantum dots (QDs) to function as strong photoreductants and present evidence that a highly reducing electron is generated from two consecutive photoexcitations of CdS QDs with intermediate reductive quenching. Mechanistic experiments suggest that Auger recombination, a photophysical phenomenon known to occur in photoexcited anionic QDs, generates transient thermally excited electrons to enable the observed reductions. Using blue light-emitting diodes (LEDs) and sacrificial amine reductants, aryl chlorides and phosphate esters with reduction potentials up to -3.4 V vs SCE are photoreductively cleaved to afford hydrodefunctionalized or functionalized products. In contrast to small-molecule catalysts, QDs are stable under these conditions and turnover numbers up to 47 500 have been achieved. These conditions can also effect other challenging reductions, such as tosylate protecting group removal from amines, debenzylation of benzyl-protected alcohols, and reductive ring opening of cyclopropane carboxylic acid derivatives.
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Affiliation(s)
- Jonas K Widness
- Department of Chemistry, UW─Madison, Madison, Wisconsin 53706, United States
| | - Daniel G Enny
- Department of Chemistry, UW─Madison, Madison, Wisconsin 53706, United States
| | | | - Mahilet T Miedenbauer
- Materials Science Program, University of Rochester, Rochester, New York 14627, United States
| | - Todd D Krauss
- Department of Chemistry, University of Rochester, Rochester, New York 14627, United States.,Materials Science Program, University of Rochester, Rochester, New York 14627, United States.,Institute of Optics, University of Rochester, Rochester, New York 14627, United States
| | - Daniel J Weix
- Department of Chemistry, UW─Madison, Madison, Wisconsin 53706, United States
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21
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Bawden JC, Francis PS, DiLuzio S, Hayne DJ, Doeven EH, Truong J, Alexander R, Henderson LC, Gómez DE, Massi M, Armstrong BI, Draper FA, Bernhard S, Connell TU. Reinterpreting the Fate of Iridium(III) Photocatalysts─Screening a Combinatorial Library to Explore Light-Driven Side-Reactions. J Am Chem Soc 2022; 144:11189-11202. [PMID: 35704840 DOI: 10.1021/jacs.2c02011] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Photoredox catalysts are primarily selected based on ground and excited state properties, but their activity is also intrinsically tied to the nature of their reduced (or oxidized) intermediates. Catalyst reactivity often necessitates an inherent instability, thus these intermediates represent a mechanistic turning point that affords either product formation or side-reactions. In this work, we explore the scope of a previously demonstrated side-reaction that partially saturates one pyridine ring of the ancillary ligand in heteroleptic iridium(III) complexes. Using high-throughput synthesis and screening under photochemical conditions, we identified different chemical pathways, ultimately governed by ligand composition. The ancillary ligand was the key factor that determined photochemical stability. Following photoinitiated electron transfer from a sacrificial tertiary amine, the reduced intermediate of complexes containing 1,10-phenanthroline derivatives exhibited long-term stability. In contrast, complexes containing 2,2'-bipyridines were highly susceptible to hydrogen atom transfer and ancillary ligand modification. Detailed characterization of selected complexes before and after transformation showed differing effects on the ground and excited state reduction potentials dependent on the nature of the cyclometalating ligands and excited states. The implications of catalyst stability and reactivity in chemical synthesis was demonstrated in a model photoredox reaction.
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Affiliation(s)
- Joseph C Bawden
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Paul S Francis
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Stephen DiLuzio
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - David J Hayne
- Institute for Frontier Materials, Deakin University, Geelong, Victoria 3220, Australia
| | - Egan H Doeven
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Johnny Truong
- School of Science, RMIT University, Melbourne, Victoria 3000, Australia
| | - Richard Alexander
- Centre for Regional and Rural Futures, Deakin University, Geelong, Victoria 3220, Australia
| | - Luke C Henderson
- Institute for Frontier Materials, Deakin University, Geelong, Victoria 3220, Australia
| | - Daniel E Gómez
- School of Science, RMIT University, Melbourne, Victoria 3000, Australia
| | - Massimiliano Massi
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
| | - Blake I Armstrong
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia 6102, Australia
| | - Felicity A Draper
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
| | - Stefan Bernhard
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Timothy U Connell
- School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3220, Australia
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22
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DiLuzio S, Connell TU, Mdluli V, Kowalewski JF, Bernhard S. Understanding Ir(III) Photocatalyst Structure-Activity Relationships: A Highly Parallelized Study of Light-Driven Metal Reduction Processes. J Am Chem Soc 2022; 144:1431-1444. [PMID: 35025486 DOI: 10.1021/jacs.1c12059] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
High-throughput synthesis and screening methods were used to measure the photochemical activity of 1440 distinct heteroleptic [Ir(C^N)2(N^N)]+ complexes for the photoreduction of Sn(II) and Zn(II) cations to their corresponding neutral metals. Kinetic data collection was carried out using home-built photoreactors and measured initial rates, obtained through an automated fitting algorithm, spanned between 0-120 μM/s for Sn(0) deposition and 0-90 μM/s for Zn(0) deposition. Photochemical reactivity was compared to photophysical properties previously measured such as deaerated excited state lifetime and emission spectral data for these same complexes; however, no clear correlations among these features were observed. A formal photochemical rate law was then developed to help elucidate the observed reactivity. Initial rates were found to be directly correlated to the product of incident photon flux with three reaction elementary efficiencies: (1) the fraction of light absorbed by the photocatalyst, (2) the fraction of excited state species that are quenched by the electron donor, and (3) the cage escape efficiency. The most active catalysts exhibit high efficiencies for all three steps, and catalyst engineering requirements to maximize these elementary efficiencies were postulated. The kinetic treatment provided the mechanistic information needed to decipher the observed structure/function trends in the high-throughput work.
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Affiliation(s)
- Stephen DiLuzio
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Timothy U Connell
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Velabo Mdluli
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jakub F Kowalewski
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Stefan Bernhard
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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23
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Bezzubov S, Ermolov K, Gorbunov A, Kalle P, Lentin I, Latyshev G, Kovalev V, Vatsouro I. Inherently dinuclear iridium(III) meso architectures accessed by cyclometalation of calix[4]arene-based bis(aryltriazoles). Dalton Trans 2021; 50:16765-16769. [PMID: 34761791 DOI: 10.1039/d1dt03579g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Conventional cyclometalation of calix[4]arene bis(aryltriazoles) with iridium(III) chloride hydrate leads to unique meso architectures in which the Ir2Cl2 core is cross-bound by two (C^N)2 ligands, which allows further replacement of the chloride bridges with ancillary ligands while maintaining the dinuclear structures of the complexes having independent or coupled iridium pairs.
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Affiliation(s)
- Stanislav Bezzubov
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, 119991 Moscow, Russia.
| | - Kirill Ermolov
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Alexander Gorbunov
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Paulina Kalle
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii pr. 31, 119991 Moscow, Russia.
| | - Ivan Lentin
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Gennadij Latyshev
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Vladimir Kovalev
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
| | - Ivan Vatsouro
- Department of Chemistry M. V. Lomonosov Moscow State University, Lenin's Hills 1, 119991 Moscow, Russia.
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24
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Kearnes SM, Maser MR, Wleklinski M, Kast A, Doyle AG, Dreher SD, Hawkins JM, Jensen KF, Coley CW. The Open Reaction Database. J Am Chem Soc 2021; 143:18820-18826. [PMID: 34727496 DOI: 10.1021/jacs.1c09820] [Citation(s) in RCA: 106] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Chemical reaction data in journal articles, patents, and even electronic laboratory notebooks are currently stored in various formats, often unstructured, which presents a significant barrier to downstream applications, including the training of machine-learning models. We present the Open Reaction Database (ORD), an open-access schema and infrastructure for structuring and sharing organic reaction data, including a centralized data repository. The ORD schema supports conventional and emerging technologies, from benchtop reactions to automated high-throughput experiments and flow chemistry. The data, schema, supporting code, and web-based user interfaces are all publicly available on GitHub. Our vision is that a consistent data representation and infrastructure to support data sharing will enable downstream applications that will greatly improve the state of the art with respect to computer-aided synthesis planning, reaction prediction, and other predictive chemistry tasks.
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Affiliation(s)
- Steven M Kearnes
- Relay Therapeutics, Cambridge, Massachusetts 02139, United States
| | - Michael R Maser
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Michael Wleklinski
- Chemistry Capabilities Accelerating Therapeutics, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
| | - Anton Kast
- Google LLC, Mountain View, California 94043, United States
| | - Abigail G Doyle
- Department of Chemistry & Biochemistry, University of California at Los Angeles, Los Angeles, California 90095, United States
| | - Spencer D Dreher
- Chemistry Capabilities Accelerating Therapeutics, Merck & Co., Inc., Kenilworth, New Jersey 07033, United States
| | - Joel M Hawkins
- Chemical Research and Development, Pfizer Worldwide Research and Development, Groton, Connecticut 06340, United States
| | - Klavs F Jensen
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Connor W Coley
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.,Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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25
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Kamecka A, Kapturkiewicz A, Pipczyński Ł. Heteroleptic luminescent [Ir(C^N)2(N^N)]+ complexes containing 1-phenyl-1H-pyrazole or 1-(2,4-difluorophenyl)-1H-pyrazole as cyclometalating and α-diimines as ancillary ligands. INORG CHEM COMMUN 2021. [DOI: 10.1016/j.inoche.2021.108764] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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26
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Das B, Gupta P. Trinuclear Organometallic Pt-Ir-Pt Complexes: Insights into Photophysical Properties, Amino Acid Binding and Protein Sensing. Chem Asian J 2021; 16:2495-2503. [PMID: 34254446 DOI: 10.1002/asia.202100719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Indexed: 11/08/2022]
Abstract
The rational synthesis of trinuclear emissive organometallic complexes with two equivalent platinum(II) centres appended to the ancillary substituted 2,2'-bipyridyl ligand of the cyclometalated iridium(III) centre is reported here. The alkynyl-platinum moiety and cyclometalated iridium(III) centres have been separated through a non-conjugated CH2 -O-CH2 linkage. The emission titration with amino acids reveals that the complexes sense free amino acids. The luminescence sensing of BSA is thus attributed to the amino acid sensing ability of the complexes and confirmed by emission anisotropy and Far-UV CD spectral study. The decrease in α-helix in the CD spectra signifies the changes in the secondary structure of protein in presence of the complexes.
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Affiliation(s)
- Bishnu Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, 741246, India
| | - Parna Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal, 741246, India
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27
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DiLuzio S, Mdluli V, Connell TU, Lewis J, VanBenschoten V, Bernhard S. High-Throughput Screening and Automated Data-Driven Analysis of the Triplet Photophysical Properties of Structurally Diverse, Heteroleptic Iridium(III) Complexes. J Am Chem Soc 2021; 143:1179-1194. [DOI: 10.1021/jacs.0c12290] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Stephen DiLuzio
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Velabo Mdluli
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Timothy U. Connell
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jacqueline Lewis
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Victoria VanBenschoten
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Stefan Bernhard
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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28
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Adhikari S, Bhattacharjee T, Bhattacharjee S, Daniliuc CG, Frontera A, Lopato EM, Bernhard S. Nickel(II) complexes based on dithiolate-polyamine binary ligand systems: crystal structures, hirshfeld surface analysis, theoretical study, and catalytic activity study on photocatalytic hydrogen generation. Dalton Trans 2021; 50:5632-5643. [PMID: 33908954 DOI: 10.1039/d1dt00352f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
To ascertain the influence of binary ligand systems [1,1-dicyanoethylene-2,2-dithiolate (i-mnt-2) and polyamine {tetraen = tris(2-aminoethyl)amine, tren = diethylene triamine and opda = o-phenylenediamine}] on the coordination modes of the Ni(ii) metal center and resulting supramolecular architectures, a series of nickel(ii) thiolate complexes [Ni(tetraen)(i-mnt)](DMSO) (1), [Ni2(tren)2(i-mnt)2] (2), and [Ni2(i-mnt)2(opda)2]n (3) have been synthesized in high yield in one step in water and structurally characterized by single crystal X-ray crystallography and spectroscopic techniques. X-ray diffraction studies disclose the diverse i-mnt-2 coordination to the Ni+2 center in the presence of active polyamine ligands, forming a slightly distorted octahedral geometry (NiN4S2) in 1, square planar (NiS4) and distorted octahedral geometries (NiN6) in the bimetallic co-crystallized aggregate of cationic [Ni(tren)2]+2 and anionic [Ni(i-mnt)2]-2 in 2, and a one dimensional (1D) polymeric chain along the [100] axis in 3, having consecutive square planar (NiS4) and octahedral (NiN6) coordination kernels. The N-HO, N-HS, N-HN, N-HS, N-HN, and N-HO type hydrogen bonds stabilize the supramolecular assemblies in 1, 2, and 3 respectively imparting interesting graph-set-motifs. The molecular Hirshfeld surface analyses (HS) and 2D fingerprint plots were utilized for decoding all types of non-covalent contacts in the crystal networks. Atomic HS analysis of the Ni+2 centers reveals significant Ni-N metal-ligand interactions compared to Ni-S interactions. We have also studied the unorthodox interactions observed in the solid state structures of 1-3 by QTAIM and NBO analyses. Moreover, all the complexes proved to be highly active water reduction co-catalysts (WRC) in a photo-catalytic hydrogen evolution process involving iridium photosensitizers, wherein 2 and 3 having a square planar arrangement around the nickel center(s) - were found to be the most active ones, achieving 1000 and 1119 turnover numbers (TON), respectively.
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Affiliation(s)
- Suman Adhikari
- Department of Chemistry, Govt. Degree College, Dharmanagar, Tripura (N)-799253, India.
| | - Tirtha Bhattacharjee
- Department of Chemistry, Bineswar Brahma Engineering College, Kokrajhar-783370, Assam, India
| | | | - Constantin Gabriel Daniliuc
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, D-48149, Münster, Germany
| | - Antonio Frontera
- Department de Quimica, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain.
| | - Eric M Lopato
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, USA
| | - Stefan Bernhard
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, USA
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Zhu X, Liu B, Cui P, Kilina S, Sun W. Multinuclear 2-(Quinolin-2-yl)quinoxaline-Coordinated Iridium(III) Complexes Tethered by Carbazole Derivatives: Synthesis and Photophysics. Inorg Chem 2020; 59:17096-17108. [PMID: 33170657 DOI: 10.1021/acs.inorgchem.0c02366] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Five mono/di/trinuclear iridium(III) complexes (1-5) bearing the carbazole-derivative-tethered 2-(quinolin-2-yl)quinoxaline (quqo) diimine (N^N) ligand were synthesized and characterized. The photophysical properties of these complexes and their corresponding diimine ligands were systematically studied via UV-vis absorption, emission, and transient absorption (TA) spectroscopy and simulated by time-dependent density functional theory. All complexes possessed strong well-resolved absorption bands at <400 nm that have predominant ligand-based 1π,π* transitions and broad structureless charge-transfer (1CT) absorption bands at 400-700 nm. The energies or intensities of these 1CT bands varied pronouncedly when the number of tethered Ir(quqo)(piq)2+ (piq refers to 1-phenylisoquinoline) units, π conjugation of the carbazole derivative linker, or attachment positions on the carbazole linker were altered. All complexes were emissive at room temperature, with 1-3 showing near-IR (NIR) 3MLCT (metal-to-ligand charge-transfer)/3LLCT (ligand-to-ligand charge-transfer) emission at ∼710 nm and 4 and 5 exhibiting red or NIR 3ILCT (intraligand charge-transfer)/3LMCT (ligand-to-metal charge-transfer) emission in CH2Cl2. In CH3CN, 1-3 displayed an additional emission band at ca. 590 nm (3ILCT/3LMCT/3MLCT/3π,π* in nature) in addition to the 710 nm band. The different natures of the emitting states of 1-3 versus those of 4 and 5 also gave rise to different spectral features in their triplet TA spectra. It appears that the parentage and characteristics of the lowest triplet excited states in these complexes are mainly impacted by the π systems of the bridging carbazole derivatives and essentially no interactions among the Ir(quqo)(piq)2+ units. In addition, all of the diimine ligands tethered by the carbazole derivatives displayed a dramatic solvatochromic effect in their emission due to the predominant intramolecular charge-transfer nature of their emitting states. Aggregation-enhanced emission was also observed from the mixed CH2Cl2/ethyl acetate or CH2Cl2/hexane solutions of these ligands.
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Affiliation(s)
- Xiaolin Zhu
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States
| | - Bingqing Liu
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States
| | - Peng Cui
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States.,Materials and Nanotechnology Program, North Dakota State University, Fargo, North Dakota 58108-6050, United States.,Key Laboratory of Eco-textiles, Ministry of Education, Jiangnan University, Wuxi, Jiangsu Province 214122, P. R. China
| | - Svetlana Kilina
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States
| | - Wenfang Sun
- Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050, United States
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30
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Das B, Borah ST, Ganguli S, Gupta P. Phosphorescent Trinuclear Pt–Ir–Pt Complexes: Insights into the Photophysical and Electrochemical Properties and Interaction with Guanine Nucleobase. Chemistry 2020; 26:14987-14995. [PMID: 32846032 DOI: 10.1002/chem.202002941] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Revised: 08/06/2020] [Indexed: 01/23/2023]
Affiliation(s)
- Bishnu Das
- Department of Chemical Sciences Indian Institute of Science Education and Research Kolkata Mohanpur, West Bengal 741246 India
| | - Sakira Tabbasum Borah
- Department of Chemical Sciences Indian Institute of Science Education and Research Kolkata Mohanpur, West Bengal 741246 India
| | - Sagar Ganguli
- Department of Chemical Sciences Indian Institute of Science Education and Research Kolkata Mohanpur, West Bengal 741246 India
| | - Parna Gupta
- Department of Chemical Sciences Indian Institute of Science Education and Research Kolkata Mohanpur, West Bengal 741246 India
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