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Piękoś P, Lipkowski P, Dehaen W, Wieczorek R, Filarowski A. Theoretical Insights into the Impact of Pyrrole and Imidazole Substituents on the BODIPY Chromophore. Molecules 2025; 30:2209. [PMID: 40430381 PMCID: PMC12114514 DOI: 10.3390/molecules30102209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2025] [Revised: 05/08/2025] [Accepted: 05/16/2025] [Indexed: 05/29/2025] Open
Abstract
This paper concerns the in silico studies of the influence of heterocyclic substituents as well as their protonated and deprotonated forms on the spectral characteristics of BODIPY (4,4-difluoro-4-bora-3a,4a-diaza-s-indacene) dyes. Computational studies were carried out in order to reveal the most effective method of modeling of the spectral features of fluorescent BODIPY dyes. To perform these studies, the pyrrole and imidazole derivatives of BODIPY dyes were selected, and their spectral features were investigated with DFT and TD-DFT calculations. The calculations showed that the deprotonation of the substituents leads to a bathochromic shift of the calculated absorption wavelength, while the protonation (imidazole derivative) brings about a hypsochromic shift with respect to the neutral form of the dye. The calculated spectral characteristics, considering the influence of the solvent polarity (PCM model), were correlated with the ETN solvatochromic parameter. These correlations show that the increase in the solvent polarity causes a hypsochromic shift of the calculated absorption and emission wavelengths, whereas the bathochromic shift of the wavelengths is observed for the protonated form.
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Affiliation(s)
- Patrycja Piękoś
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland;
| | - Paweł Lipkowski
- Department of Physical and Quantum Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland;
| | - Wim Dehaen
- Department of Chemistry, KU Leuven, Celestijnenlaan 200f-bus 02404, 3001 Leuven, Belgium;
| | - Robert Wieczorek
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland;
| | - Aleksander Filarowski
- Faculty of Chemistry, University of Wroclaw, F. Joliot-Curie 14, 50-383 Wrocław, Poland;
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Sahin E, Ozsamur NG, Altves S, Baser A, Verirsen İ, Celik FS, Erbas-Cakmak S. Reconfigurable logic operations for fluorescent sensing of drug resistant and/or hypoxic cancer cells. J Mater Chem B 2025; 13:4791-4795. [PMID: 40183755 DOI: 10.1039/d5tb00193e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
Abstract
Precision diagnosis is of great importance and can be achievable through information processing sensors. A distyryl pyridinium BODIPY decorated with nitroreductase and esterase enzyme responsive modules is shown to display configurable fluorescence read out upon enzyme-catalysed elimination reaction creating pyridine distyryl BODIPYs. Discrimination of the cellular profile, i.e. drug resistance and hypoxic microenvironment, is achieved with a single molecule through reconfigurable molecular logic gate operations.
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Affiliation(s)
- Emin Sahin
- Science and Research Application Center (BİTAM), Necmettin Erbakan University, Koycegiz Yerleskesi, Meram, 42140, Konya, Turkey.
- Department of Molecular Biology and Genetics, Faculty of Science, Necmettin Erbakan University, Ahmet Kelesoglu Yerleskesi, Meram, 42090, Konya, Turkey
| | - Nezahat Gokce Ozsamur
- Science and Research Application Center (BİTAM), Necmettin Erbakan University, Koycegiz Yerleskesi, Meram, 42140, Konya, Turkey.
- Department of Molecular Biology and Genetics, Faculty of Science, Necmettin Erbakan University, Ahmet Kelesoglu Yerleskesi, Meram, 42090, Konya, Turkey
| | - Safaa Altves
- Science and Research Application Center (BİTAM), Necmettin Erbakan University, Koycegiz Yerleskesi, Meram, 42140, Konya, Turkey.
| | - Aminesena Baser
- Department of Molecular Biology and Genetics, Konya Food and Agriculture University, Meram, Konya, Turkey
| | - İmran Verirsen
- Department of Molecular Biology and Genetics, Konya Food and Agriculture University, Meram, Konya, Turkey
| | - Fatma Secer Celik
- Science and Research Application Center (BİTAM), Necmettin Erbakan University, Koycegiz Yerleskesi, Meram, 42140, Konya, Turkey.
| | - Sundus Erbas-Cakmak
- Science and Research Application Center (BİTAM), Necmettin Erbakan University, Koycegiz Yerleskesi, Meram, 42140, Konya, Turkey.
- Department of Molecular Biology and Genetics, Faculty of Science, Necmettin Erbakan University, Ahmet Kelesoglu Yerleskesi, Meram, 42090, Konya, Turkey
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