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Luo H, Li ZK, Zhang ZW, Chen LJ, Su J. The halogen(I) complex of astatine: a theoretical perspective on structural and bonding properties. Phys Chem Chem Phys 2025. [PMID: 40264256 DOI: 10.1039/d4cp04903a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
Abstract
Halonium ions (X+) can interact with two Lewis bases to form linear 3c4e halogen-bonded halogen(I) complexes ([D⋯X⋯D]+), which have been found to be useful in organic synthesis and supramolecular chemistry. However, current research is limited to lighter halogens (F, Cl, Br, and I) and does not include the At element owing to the lack of stable isotopes for experimental studies. Herein, we explore the structural and bonding properties of an At-mediated 3c4e halogen(I) complex ([D⋯At⋯D]+) and the effects of various Lewis bases, substituents, and halogens using relativistic density functional theory (DFT) and the coupled-cluster approach with single, double and perturbative triple excitation (CCSD(T)) calculations. Theoretical calculation results show that At, similar to other halogens, can form a linear [D⋯At⋯D]+ structure with equal bond lengths from the halonium ion to two donor atoms. The physical nature of the interaction and electronic structure of the At-mediated 3c4e halogen(I) complex are the same as those of the halogen(I) complexes of light halogens. Interestingly, the positive correlation between the polarizability of the halogen and the interaction between D and [D⋯X]+ fragments (X = F to At) observed at the scalar relativistic level does not hold when considering spin-orbit coupling effects on the At atom. This work deepens the understanding of the halogen bonds of At, and the stable [D⋯At⋯D]+ structure offers new insights into At coordination chemistry and the relevant experimental study of radiolabeling of At.
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Affiliation(s)
- Hao Luo
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China.
| | - Ze-Kai Li
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China.
| | - Zhuo-Wei Zhang
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China.
| | - Lin-Jia Chen
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China.
| | - Jing Su
- College of Chemistry, Sichuan University, Chengdu 610064, P. R. China.
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2
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Mehdizadeh K, PourFalatoon S, Nouraliei M, Farsadrooh M, Kim H, Ramezani Farani M, Huh YS. Comparative study of the therapeutic potential of C 24, C 32, B 12N 12, and B 16N 16 nanocages as drug delivery carriers for delivering an erlotinib derivative: DFT and QTAIM investigations. NANOSCALE 2025. [PMID: 40242881 DOI: 10.1039/d4nr05393a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
Abstract
The use of nanostructures as drug delivery vehicles for a wide range of anticancer medications to lessen their severe side effects by delivering them to the targeted tumor cell location is presently a broadly studied innovative biomedical application of different nanostructures. To investigate the capability of C24 and C32, B12N12, and B16N16 nanocages as nanocarriers for delivering the methyl erlotinib molecule, we conducted density functional theory (DFT) computations using the M06-2X/6-311G(d,p) and M06-2X/6-31G(d) levels of theory. The calculation of the adsorption energy of methyl erlotinib on the nanocages was performed in aqueous and gaseous phases. The adsorption energy values associated with the interaction between the nanocages and methyl erlotinib were negative, indicating that this interaction was exothermic in nature. The adsorption energy values in the aqueous state were higher than those in the gaseous state, suggesting a stronger interaction in the aqueous state, with the exception of the C32 nanocage. Analyses of the density of states (DOS) and projected density of states (PDOS) were performed in order to examine the effect of methyl erlotinib adsorption on the electronic characteristics of selected nanocages. The findings indicated that the B12N12 nanocage following methyl erlotinib molecule adsorption came nearer to the Fermi level than the other nanocages examined. Calculations based on the Quantum Theory of Atoms in Molecules (QTAIM) indicated that methyl erlotinib had a weak interaction with all selected nanocages. According to the values of the adsorption energy derived from both methodologies, the interaction between methyl erlotinib and the B12N12 nanocage was determined to be more robust than the interaction between methyl erlotinib and the C24 nanocage, while the interaction between methyl erlotinib and the B16N16 nanocage was also stronger than that with the C32 nanocage. Notable variations in the ΔEg values were detected for methyl erlotinib@B12N12 and methyl erlotinib@B16N16 across all methods, suggesting that the conductivity of these two nanostructures improved more significantly following the adsorption of methyl erlotinib than that of other nanostructures. Consequently, the B12N12 and B16N16 nanocages can function as nanosensors for methyl erlotinib.
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Affiliation(s)
- Khourshid Mehdizadeh
- Department of Chemistry, Roudsar and Amlash Branch, Islamic Azad University, Roudsar, Iran
| | - Sourour PourFalatoon
- Department of Chemistry, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Milad Nouraliei
- Department of Chemistry, Islamic Azad University, Central Tehran Branch, Tehran, Iran
| | - Majid Farsadrooh
- Renewable Energies Research Laboratory, Department of Chemistry, Faculty of Science, University of Sistan and Baluchestan, P.O. Box 98135 674, Zahedan, Iran.
| | - Hanseung Kim
- NanoBio High-Tech Materials Research Center, Department of Biological Sciences and Bioengineering, Inha University, Incheon 22212, Republic of Korea.
| | - Marzieh Ramezani Farani
- NanoBio High-Tech Materials Research Center, Department of Biological Sciences and Bioengineering, Inha University, Incheon 22212, Republic of Korea.
| | - Yun Suk Huh
- NanoBio High-Tech Materials Research Center, Department of Biological Sciences and Bioengineering, Inha University, Incheon 22212, Republic of Korea.
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Perera JS, Pyles JM, Srivastava AK, Lawrence CC, Le M, Bills LA, Tobar JM, Tabacaru GC, McIntosh LA, Yennello SJ, Burns JD. Probing the Redox Reactivity of Alkyl Bound Astatine: A Study on the Formation and Cleavage of a Stable At-C Bond. Inorg Chem 2025; 64:911-921. [PMID: 39789700 DOI: 10.1021/acs.inorgchem.4c04081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]
Abstract
The formation of a stable alkyl At-C bond occurs during the shipment of 211At on a 3-octanone-impregnated column and the reactivity of 211At stripped from columns has been studied. The 211At could not be recovered from the 3-octanone organic phase using nitric acid or sodium hydroxide, even up to 10 and 15.7 M, respectively. Several reducing and oxidizing agents, including hydrazine, hydroxylamine, ascorbic acid, ceric ammonium nitrate, potassium permanganate, sodium hypochlorite, and calcium hypochlorite were used to promote the recovery of 211At. The most effective reducing agent was hydroxylamine, where ∼70% of the 211At was recovered, while among oxidizing agents ceric ammonium nitrate, potassium permanganate, and sodium hypochlorite all showed near quantitative recovery of 211At. These results indicate an At-C bond is being formed during the shipment of the column and a redox reaction is required for bond cleavage to occur. DFT calculations have been used to propose several products of an AtO+-3-octanone reaction, with 4-astato-5-hydroxy-octa-3-one being the most probable.
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Affiliation(s)
- Jehan S Perera
- Department of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States
| | - Jennifer M Pyles
- Department of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States
| | - Avinash K Srivastava
- Department of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States
| | - Christine C Lawrence
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Marcus Le
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Laura A Bills
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Justin M Tobar
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Gabriel C Tabacaru
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Lauren A McIntosh
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Sherry J Yennello
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Jonathan D Burns
- Department of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States
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Joby P, Ramasamy R, Solomon RV, Wilson P. Molecular engineering of BODIPY-bridged fluorescent probes for lysosome imaging - a computational study. Phys Chem Chem Phys 2024; 26:22912-22930. [PMID: 39171363 DOI: 10.1039/d4cp02570a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
Abstract
Lysosome imaging plays an important role in diagnosing many diseases and understanding various intracellular processes. Recently, B0 was reported as a fluorescent probe capable of detecting lysosomal viscosity changes. BODIPY is fused into the molecule as a bridge between the acceptor and donor components of B0, yielding nine new B molecules. Computational design and analysis of their optoelectronic properties were conducted to evaluate their effectiveness as fluorescent probes for lysosome imaging, with a specific target of HSA inside lysosomes. Optimized geometries reveal excellent π electron delocalization, resulting in nearly planar molecular structures. Frontier molecular orbital analysis suggests intramolecular charge transfer, along with π-π* transitions, from donor to bridge. TD-DFT calculations were performed to study absorption properties in the solvent phase, with B3PW91 showing good agreement with experiments. Molecular docking studies indicate that B derivatives can bind with HSA, and molecular dynamics simulations confirm their HSA targeting ability. This investigation highlights the introduction of BODIPY as a bridge for developing new probes capable of producing NIR fluorescence for bio-imaging, aiding in disease diagnosis.
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Affiliation(s)
- Prince Joby
- Department of Chemistry, Madras Christian College (Autonomous) (Affiliated to the University of Madras), Chennai, Tamil Nadu 600 059, India.
| | - Rohith Ramasamy
- Department of Chemistry, Madras Christian College (Autonomous) (Affiliated to the University of Madras), Chennai, Tamil Nadu 600 059, India.
| | - Rajadurai Vijay Solomon
- Department of Chemistry, Madras Christian College (Autonomous) (Affiliated to the University of Madras), Chennai, Tamil Nadu 600 059, India.
| | - Paul Wilson
- Department of Chemistry, Madras Christian College (Autonomous) (Affiliated to the University of Madras), Chennai, Tamil Nadu 600 059, India.
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Soroushmanesh M, Dinari M, Farrokhpour H. Comprehensive Computational Investigation of the Porphyrin-Based COF as a Nanocarrier for Delivering Anti-Cancer Drugs: A Combined MD Simulation and DFT Calculation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:19073-19085. [PMID: 39189806 DOI: 10.1021/acs.langmuir.4c02154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
As nanomaterials have gained prominence in drug delivery technology, exploring their feasibility through computational methods is beneficial before practical tests. In this study, we aim to evaluate the capability of the porphyrin-based covalent organic framework COF-366 as a nanocarrier for two anticancer drugs, irinotecan (IRI) and doxorubicin (DOX). The optimal binding conformation of the drug molecules on the COF surface was predicted by using molecular docking. Subsequently, molecular dynamic simulation (MD) was performed to assess the adsorption mechanism of drug molecules on the COF in the aqueous environment. The free energy of adsorption for DOX and IRI was estimated to be -20.07 and -23.89 kcal/mol, respectively. The adsorption of both drugs on the COF surface is mainly influenced by the π-π interaction. Furthermore, density functional theory (DFT) calculation, natural bond orbital (NBO), and quantum theory of atoms in molecules (QTAIM) analyses were employed to investigate the structural stability of Drug@COF complexes and gain a detailed understanding of the interaction between them at the molecular level. Based on DFT results, it was found that in addition to π-π interaction, the bis-piperidine-phenylene interaction affects the adsorption of IRI on the COF surface. Moreover, the diffusion behavior of the drug molecule inside the COF pore was simulated using a ten-layer COF. Based on the mean square displacement analysis, the diffusion coefficients of DOX and IRI within the COF pore were calculated to be 108 and 97 um2/s, respectively. This computational study sheds light on how different types of interactions between the drug molecule and COF affect the adsorption and diffusion process. Our findings validated that the porphyrin-based COF-366 can serve as a nanobased platform for delivering DOX and IRI.
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Affiliation(s)
- Mohsen Soroushmanesh
- Department of Chemistry, Isfahan University of Technology, Isfahan 84156-83111, Islamic Republic of Iran
| | - Mohammad Dinari
- Department of Chemistry, Isfahan University of Technology, Isfahan 84156-83111, Islamic Republic of Iran
| | - Hossein Farrokhpour
- Department of Chemistry, Isfahan University of Technology, Isfahan 84156-83111, Islamic Republic of Iran
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Mikeska ER, Wilson RE, Sen A, Autschbach J, Blakemore JD. Preparation of Neptunyl and Plutonyl Acetates To Access Nonaqueous Transuranium Coordination Chemistry. J Am Chem Soc 2024; 146:21509-21524. [PMID: 39047184 DOI: 10.1021/jacs.4c04613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Uranyl diacetate dihydrate is a useful reagent for the preparation of uranyl (UO22+) coordination complexes, as it is a well-defined stoichiometric compound featuring moderately basic acetates that can facilitate protonolysis reactivity, unlike other anions commonly used in synthetic actinide chemistry such as halides or nitrate. Despite these attractive features, analogous neptunium (Np) and plutonium (Pu) compounds are unknown to date. Here, a modular synthetic route is reported for accessing stoichiometric neptunyl(VI) and plutonyl(VI) diacetate compounds that can serve as starting materials for transuranic coordination chemistry. The new NpO22+ and PuO22+ complexes, as well as a corresponding molecular UO22+ complex, are isomorphous in the solid state, and in solution show similar solubility properties that facilitate their use in synthesis. In both solid and solution state, the +VI oxidation state (O.S.) is maintained, as demonstrated by vibrational and optical spectroscopy, confirming that acetate anions stabilize the oxidizing, high-valent +VI states of Np and Pu as they do for the more stable U(VI). All three acetate salts readily react with a model diprotic ligand, affording incorporation of U(VI), Np(VI), and Pu(VI) cores into molecular coordination compounds that occurs concomitantly with elimination of acetic acid; the new complexes are high-valent, yet overall charge neutral, facilitating entry into nonaqueous chemistry by rational synthesis. Computational studies reveal that the dianionic ligand framework assists in stabilizing the +VI O.S. via donation to the 5f shells of the actinides, highlighting the potential usefulness of protonolysis reactivity toward preparation of stabilized high-valent transuranic species.
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Affiliation(s)
- Emily R Mikeska
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Richard E Wilson
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Asmita Sen
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, United States
| | - James D Blakemore
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
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Gamboni G, Belpassi L, Belanzoni P. The Chemical Bond at the Bottom of the Periodic Table: The Case of the Heavy Astatine and the Super-Heavy Tennessine. Chemphyschem 2024; 25:e202400310. [PMID: 38708605 DOI: 10.1002/cphc.202400310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Accepted: 05/03/2024] [Indexed: 05/07/2024]
Abstract
In this work, we study the chemical bond in molecules containing heavy and super-heavy elements according to the current state-of-the-art bonding models. An Energy Decomposition Analysis in combination with Natural Orbital for Chemical Valence (EDA-NOCV) within the relativistic four-component Dirac-Kohn-Sham (DKS) framework is employed, which allows to successfully include the spin-orbit coupling (SOC) effects on the chemical bond description. Simple halogen-bonded adducts ClX⋯L (X=At, Ts; L=NH3, Br-, H2O, CO) of astatine and tennessine have been selected to assess a trend on descending along a group, while modulating the ClX⋯L bond features through the different electronic nature of the ligand L. Interesting effects caused by SOC have been revealed: i) a huge increase of the ClTs dipole moment (which is almost twice as that of ClAt), ii) a lowering of the ClX⋯L bonding energy arising from different contributions to the ClX…L interaction energy strongly depending on the nature of L, iii) a quenching of one of the π back-donation components to the bond. In the ClTs(CO) adduct, the back-donation from ClTs to CO becomes the most important component. The analysis of the electronic structure of the ClX dimers allows for a clear interpretation of the SOC effects in these systems.
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Affiliation(s)
- Giulia Gamboni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123, Perugia, Italy
| | - Leonardo Belpassi
- CNR Institute of Chemical Science and Technologies "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy
| | - Paola Belanzoni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123, Perugia, Italy
- CNR Institute of Chemical Science and Technologies "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy
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Burgers PC, Zeneyedpour L, Luider TM, Holmes JL. Estimation of thermodynamic and physicochemical properties of the alkali astatides: On the bond strength of molecular astatine (At 2 ) and the hydration enthalpy of astatide (At - ). JOURNAL OF MASS SPECTROMETRY : JMS 2024; 59:e5010. [PMID: 38488842 DOI: 10.1002/jms.5010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 01/29/2024] [Accepted: 02/01/2024] [Indexed: 03/17/2024]
Abstract
The recent accurate and precise determination of the electron affinity (EA) of the astatine atom At0 warrants a re-investigation of the estimated thermodynamic properties of At0 and astatine containing molecules as this EA was found to be much lower (by 0.4 eV) than previous estimated values. In this contribution we estimate, from available data sources, the following thermodynamic and physicochemical properties of the alkali astatides (MAt, M = Li, Na, K, Rb, Cs): their solid and gaseous heats of formation, lattice and gas-phase binding enthalpies, sublimation energies and melting temperatures. Gas-phase charge-transfer dissociation energies for the alkali astatides (the energy requirement for M+ At- ➔ M0 + At0 ) have been obtained and are compared with those for the other alkali halides. Use of Born-Haber cycles together with the new AE (At0 ) value allows the re-evaluation of ΔHf (At0 )g (=56 ± 5 kJ/mol); it is concluded that (At2 )g is a weakly bonded species (bond strength <50 kJ/mol), significantly weaker bonded than previously estimated (116 kJ/mol) and much weaker bonded than I2 (148 kJ/mol), but in agreement with the finding from theory that spin-orbit coupling considerably reduces the bond strength in At2 . The hydration enthalpy (ΔHaq ) of At- is estimated to be -230 ± 2 kJ/mol (using ΔHaq [H+ ] = -1150.1 kJ/mol), in good agreement with molecular dynamics calculations. Arguments are presented that the largest alkali halide, CsAt, like the smallest, LiF, will be only sparingly soluble in water, following the generalization from hard/soft acid/base principles that "small likes small" and "large likes large."
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Affiliation(s)
- Peter C Burgers
- Department of Neurology, Laboratory of Neuro-Oncology, Erasmus Medical Center, Rotterdam, The Netherlands
| | - Lona Zeneyedpour
- Department of Neurology, Laboratory of Neuro-Oncology, Erasmus Medical Center, Rotterdam, The Netherlands
| | - Theo M Luider
- Department of Neurology, Laboratory of Neuro-Oncology, Erasmus Medical Center, Rotterdam, The Netherlands
| | - John L Holmes
- Department of Chemistry and Biological Sciences, University of Ottawa, Ottawa, Canada
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Shaaban T, Réal F, Maurice R, Vallet V. Stability of the protactinium(V) mono-oxo cation probed by first-principle calculations. Chemistry 2024:e202304068. [PMID: 38240195 DOI: 10.1002/chem.202304068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Indexed: 02/22/2024]
Abstract
This study explores the distinctive behavior of protactinium (Z=91) within the actinide series. In contrast to neighboring elements like uranium or plutonium, protactinium in the pentavalent state diverges by not forming the typical dioxo protactinyl moiety PaO2 + in aqueous phase. Instead, it manifests as a monooxo PaO3+ cation or a Pa5+ . Employing first-principle calculations with implicit and explicit solvation, we investigate two stoichiometrically equivalent neutral complexes: PaO(OH)2 (X)(H2 O) and Pa(OH)4 (X), where X represents various monodentate and bidentate ligands. Calculating the Gibbs free energy for the reaction PaO(OH)2 (X)(H2 O)→Pa(OH)4 (X), we find that the PaO(OH)2 (X)(H2 O) complex is stabilized with Cl- , Br- , I- , NCS- , NO3 - , and SO4 2- ligands, while it is not favored with OH- , F- , and C2 O4 2- ligands. Quantum Theory of Atoms in Molecules (QTAIM) and Natural Bond Orbital (NBO) methods reveal the Pa mono-oxo bond as a triple bond, with significant contributions from the 5f and 6d shells. Covalency of the Pa mono-oxo bond increases with certain ligands, such as Cl- , Br- , I- , NCS- , and NO3 - . These findings elucidate protactinium's unique chemical attributes and provide insights into the conditions supporting the stability of relevant complexes.
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Affiliation(s)
- Tamara Shaaban
- Univ. Lille, CNRS, UMR 8523 - PhLAM - Physique des Lasers Atomes et Molécules, F-59000, Lille, France
| | - Florent Réal
- Univ. Lille, CNRS, UMR 8523 - PhLAM - Physique des Lasers Atomes et Molécules, F-59000, Lille, France
| | - Rémi Maurice
- Univ Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes) -, UMR 6226, F-35000, Rennes, France
| | - Valérie Vallet
- Univ. Lille, CNRS, UMR 8523 - PhLAM - Physique des Lasers Atomes et Molécules, F-59000, Lille, France
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10
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Anjalikrishna PK, Gadre SR, Suresh CH. Topology of electrostatic potential and electron density reveals a covalent to non-covalent carbon-carbon bond continuum. Phys Chem Chem Phys 2023; 25:25191-25204. [PMID: 37721180 DOI: 10.1039/d3cp03268j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
The covalent and non-covalent nature of carbon-carbon (CC) interactions in a wide range of molecular systems can be characterized using various methods, including the analysis of molecular electrostatic potential (MESP), represented as V(r), and the molecular electron density (MED), represented as ρ(r). These techniques provide valuable insights into the bonding between carbon atoms in different molecular environments. By uncovering a fundamental exponential relationship between the distance of the CC bond and the highest eigenvalue (λv1) of V(r) at the bond critical point (BCP), this study establishes the continuum model for all types of CC interactions, including transition states. The continuum model is further delineated into three distinct regions, namely covalent, borderline cases, and non-covalent, based on the gradient, , with the bond distance of the CC interaction. For covalent interactions, this parameter exhibits a more negative value than -5.0 a.u. Å-1, while for non-covalent interactions, it is less negative than -1.0 a.u. Å-1. Borderline cases, which encompass transition state structures, fall within the range of -1.0 to -5.0 a.u. Å-1. Furthermore, this study expands upon Popelier's analysis of the Laplacian of the MED, denoted as ∇2ρ, to encompass the entire spectrum of covalent, non-covalent, and borderline cases of CC interactions. Therefore, the present study presents compelling evidence supporting the concept of a continuum model for CC bonds in chemistry. Additionally, this continuum model is further explored within the context of C-N, C-O, C-S, N-N, O-O, and S-S interactions, albeit with a limited dataset.
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Affiliation(s)
- Puthannur K Anjalikrishna
- Chemical Sciences and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Thiruvananthapuram, Kerala, 695019, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Shridhar R Gadre
- Departments of Chemistry and Scientific Computing, Modelling & Simulation, Savitribai Phule Pune University, Pune 411007, India
| | - Cherumuttathu H Suresh
- Chemical Sciences and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Thiruvananthapuram, Kerala, 695019, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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11
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Zapata Escobar AD, Maldonado AF, Aucar GA. The LRESC-Loc Model to Analyze Magnetic Shieldings with Localized Molecular Orbitals. J Phys Chem A 2022; 126:9519-9534. [PMID: 36512732 DOI: 10.1021/acs.jpca.2c05604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The leading electronic mechanisms of relativistic effects in the NMR magnetic shieldings of heavy-atom (HA) containing molecules are well described by the linear response with elimination of small components model (LRESC). We show here first results from a new version of the LRESC model written in terms of localized molecular orbitals (LMOs) which is coined as LRESC-Loc. Those LMOs resemble "chemist's orbitals", representing lone-pairs, atomic cores, and bonds. The whole set of relativistic effects are expressed in terms of non-ligand-dependent and ligand-dependent contributions. We show the electronic origin of trends and behavior of different mechanisms in molecular systems which contain heavy elements that belong to any of the IB to VIIA groups of the periodic table. The SO mechanism has a well-defined dependence with the LPs (LPσ and LPπ) when the HAs have them, but the non-SO mechanisms mostly depend on other LMOs. In addition we propose here that the SO mechanism can be used to characterize interactions involving LPs and the non-SO mechanisms to characterize covalent and close-shell interactions. All our main results are in accord with previous findings, though we are now able to analyze them in a different manner.
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Affiliation(s)
- Andy D Zapata Escobar
- Physics Department, Natural and Exact Science Faculty, Northeastern University of Argentina, Corrientes, W3404AAS, Argentina.,Institute for Modeling and Innovative Technology, IMIT (CONICET-UNNE), Corrientes, W3404AAS, Argentina
| | - Alejandro F Maldonado
- Institute for Modeling and Innovative Technology, IMIT (CONICET-UNNE), Corrientes, W3404AAS, Argentina
| | - Gustavo A Aucar
- Physics Department, Natural and Exact Science Faculty, Northeastern University of Argentina, Corrientes, W3404AAS, Argentina.,Institute for Modeling and Innovative Technology, IMIT (CONICET-UNNE), Corrientes, W3404AAS, Argentina
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12
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Zhutova N, Réal F, Vallet V, Maurice R. Geometries, interaction energies and bonding in [Po(H 2O) n] 4+ and [PoCl n] 4-n complexes. Phys Chem Chem Phys 2022; 24:26180-26189. [PMID: 36278789 DOI: 10.1039/d2cp04001h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Polonium (Z = 84) is one of the rarest elements on Earth. More than a century after its discovery, its chemistry remains poorly known and even basic questions have not yet been satisfactorily addressed. In this work, we perform a systematic study of the geometries, interactions energies and bonding in basic polonium(IV) species, namely the hydrated [Po(H2O)n]4+ and chlorinated [PoCln]4-n complexes by means of gas-phase electronic structure calculations. We show that while up to nine water molecules can fit in the first coordination sphere of the polonium(IV) ion, its coordination sphere can already be filled with eight chloride ligands. Capitalising on previous theoretical studies, a focused methodological study based on interaction energies and bond distances allows us to validate the MP2/def2-TZVP level of theory for future ground-state studies. After discussing the similarities and differences between complexes with the same number of ligands, we perform topological analyses of the MP2 electron densities in the quantum theory of atoms in molecules (QTAIM) fashion. While the water complexes display typical signatures of closed-shell interactions, we reveal large Po-Cl delocalisation indices, especially in the hypothetical [PoCl]3+ complex. This "enhanced" covalency opens the way for a significant spin-orbit coupling (SOC) effect on the corresponding bond distance, which has been studied using two independent approaches (i.e. one a priori and one a posteriori). We finally conclude by stressing that while the SOC may not affect much the geometries of high-coordinated polonium(IV) complexes, it should definitely not be neglected in the case of low-coordinated ones.
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Affiliation(s)
- Nadiya Zhutova
- Subatech, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, 4 rue A. Kastler, 44307, Nantes Cedex 3, France
- Univ Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes) - UMR 6226, F-35000, Rennes, France.
| | - Florent Réal
- Univ. Lille, CNRS, UMR 8523-PhLAM-Physique des Lasers, Atomes et Molécules, F-59000, Lille, France.
| | - Valérie Vallet
- Univ. Lille, CNRS, UMR 8523-PhLAM-Physique des Lasers, Atomes et Molécules, F-59000, Lille, France.
| | - Rémi Maurice
- Subatech, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, 4 rue A. Kastler, 44307, Nantes Cedex 3, France
- Univ Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes) - UMR 6226, F-35000, Rennes, France.
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13
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Nouraliei M, Javadian H, Mehdizadeh K, Sheibanian N, Douk AS, Mohamadzade F, Osouleddini N. Fullerene carbon nanostructures for the delivery of phenelzine derivatives as new drugs to inhibit monoamine oxidase enzyme: Molecular docking interactions and density functional theory calculations. Colloids Surf A Physicochem Eng Asp 2022. [DOI: 10.1016/j.colsurfa.2022.130599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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14
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Hadi Z, Nouraliei M, Yousefi-Siavoshani A, Javadian H, Chalanchi SM, Hashemi SS. A DFT study on the therapeutic potential of carbon nanostructures as sensors and drug delivery carriers for curcumin molecule: NBO and QTAIM analyses. Colloids Surf A Physicochem Eng Asp 2022. [DOI: 10.1016/j.colsurfa.2022.129698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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15
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Burns JD, Tereshatov EE, Zhang B, Tabacaru GC, McIntosh LA, Schultz SJ, McCann LA, Harvey BM, Hannaman A, Lofton KN, Sorensen MQ, Vonder Haar AL, Hall MB, Yennello SJ. Complexation of Astatine(III) with Ketones: Roles of NO 3– Counterion and Exploration of Possible Binding Modes. Inorg Chem 2022; 61:12087-12096. [DOI: 10.1021/acs.inorgchem.2c00085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jonathan D. Burns
- Department of Chemistry, University of Alabama at Birmingham, Birmingham, Alabama 35294, United States
| | - Evgeny E. Tereshatov
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Bowen Zhang
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Gabriel C. Tabacaru
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Lauren A. McIntosh
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Steven J. Schultz
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Laura A. McCann
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Bryan M. Harvey
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Physics, Texas A&M University, College Station, Texas 77843, United States
| | - Andrew Hannaman
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Kylie N. Lofton
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Maxwell Q. Sorensen
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Amy L. Vonder Haar
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
| | - Michael B. Hall
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Sherry J. Yennello
- Cyclotron Institute, Texas A&M University, College Station, Texas 77843, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
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Recent progress of astatine-211 in endoradiotherapy: Great advances from fundamental properties to targeted radiopharmaceuticals. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.03.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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17
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Yu X, Sergentu DC, Feng R, Autschbach J. Covalency of Trivalent Actinide Ions with Different Donor Ligands: Do Density Functional and Multiconfigurational Wavefunction Calculations Corroborate the Observed "Breaks"? Inorg Chem 2021; 60:17744-17757. [PMID: 34747167 DOI: 10.1021/acs.inorgchem.1c02374] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
A comprehensive ab initio study of periodic actinide-ligand bonding trends for trivalent actinides is performed. Relativistic density functional theory (DFT) and complete active-space (CAS) self-consistent field wavefunction calculations are used to dissect the chemical bonding in the [AnCl6]3-, [An(CN)6]3-, [An(NCS)6]3-, [An(S2PMe2)3], [An(DPA)3]3-, and [An(HOPO)]- series of actinide (An = U-Es) complexes. Except for some differences for the early actinide complexes with DPA, bond orders and excess 5f-shell populations from donation bonding show qualitatively similar trends in 5f n active-space CAS vs DFT calculations. The influence of spin-orbit coupling on donation bonding is small for the tested systems. Along the actinide series, chemically soft vs chemically harder ligands exhibit clear differences in bonding trends. There are pronounced changes in the 5f populations when moving from Pu to Am or Cm, which correlate with previously noted "breaks" in chemical trends. Bonding involving 5f becomes very weak beyond Cm/Bk. We propose that Cm(III) is a borderline case among the trivalent actinides that can be meaningfully considered to be involved in ground-state 5f covalent bonding.
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Affiliation(s)
- Xiaojuan Yu
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Dumitru-Claudiu Sergentu
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Rulin Feng
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
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Goj P, Wajda A, Błachowski A, Stoch P. A new iron-phosphate compound (Fe 7P 11O 38) obtained by pyrophosphate stoichiometric glass devitrification. Sci Rep 2021; 11:22957. [PMID: 34824346 PMCID: PMC8617057 DOI: 10.1038/s41598-021-02471-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 11/16/2021] [Indexed: 11/09/2022] Open
Abstract
Iron phosphates are a wide group of compounds that possess versatile applications. Their properties are strongly dependent on the role and position of iron in their structure. Iron, because of its chemical character, is able to easily change its redox state and accommodate different chemical surroundings. Thus, iron-phosphate crystallography is relatively complex. In addition, the compounds possess intriguing magnetic and electric properties. In this paper, we present crystal structure properties of a newly developed iron-phosphate compound that was obtained by devitrification from iron-phosphate glass of pyrophosphate stoichiometry. Based on X-ray diffraction (XRD) studies, the new compound (Fe7P11O38) was shown to adopt the hexagonal space group P63 (No. 173) in which iron is present as Fe3+ in two inequivalent octahedral and one tetrahedral positions. The results were confirmed by Raman and Mössbauer spectroscopies, and appropriate band positions, as well as hyperfine interaction parameters, are assigned and discussed. The magnetic and electric properties of the compound were predicted by ab initio simulations. It was observed that iron magnetic moments are coupled antiferromagnetically and that the total magnetic moment of the unit cell has an integer value of 2 µB. Electronic band structure calculations showed that the material has half-metallic properties.
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Affiliation(s)
- Pawel Goj
- AGH-University of Science and Technology, Faculty of Materials Science and Ceramics, Al. Mickiewicza 30, 30-059, Kraków, Poland.
| | - Aleksandra Wajda
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387, Kraków, Poland
| | - Artur Błachowski
- Mössbauer Spectroscopy Laboratory, Institute of Physics, Pedagogical University, ul. Podchorążych 2, 30-084, Kraków, Poland
| | - Pawel Stoch
- AGH-University of Science and Technology, Faculty of Materials Science and Ceramics, Al. Mickiewicza 30, 30-059, Kraków, Poland
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Guérard F, Maingueneau C, Liu L, Eychenne R, Gestin JF, Montavon G, Galland N. Advances in the Chemistry of Astatine and Implications for the Development of Radiopharmaceuticals. Acc Chem Res 2021; 54:3264-3275. [PMID: 34350753 DOI: 10.1021/acs.accounts.1c00327] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
ConspectusAstatine (At) is the rarest on Earth of all naturally occurring elements, situated below iodine in the periodic table. While only short-lived isotopes (t1/2 ≤ 8.1 h) are known, 211At is the object of growing attention due to its emission of high-energy alpha particles. Such radiation is highly efficient to eradicate disseminated tumors, provided that the radionuclide is attached to a cancer-targeting molecule. The interest in applications of 211At in nuclear medicine translates into the increasing number of cyclotrons able to produce it. Yet, many challenges related to the minute amounts of available astatine are to be overcome in order to characterize its physical and chemical properties. This point is of paramount importance to develop synthetic strategies and solve the labeling instability in current approaches that limits the use of 211At-labeled radiopharmaceuticals. Despite its discovery in the 1940s, only the past decade has seen a significant rise in the understanding of astatine's basic chemical and radiochemical properties, thanks to the development of new analytical and computational tools.In this Account, we give a concise summary of recent advances in the determination of the physicochemical properties of astatine, putting in perspective the duality of this element which exhibits the characteristics both of a halogen and of a metal. Striking features were evidenced in the recent determination of its Pourbaix diagram such as the identification of stable cationic species, At+ and AtO+, contrasting with other halogens. Like metals, these species were shown to form complexes with anionic ligands and to exhibit a particular affinity for organic species bearing soft donor atoms. On the other hand, astatine shares many characteristics with other halogen elements. For instance, the At- species exists in water, but with the least range of EH-pH stability in the halogen series. Astatine can form molecular interactions through halogen bonding, and it was only recently identified as the strongest halogen-bond donor. This ability is nonetheless affected by relativistic effects, which translate to other peculiarities for this heavy element. For instance, the spin-orbit coupling boosts astatine's propensity to form charge-shift bonds, catching up with the behavior of the lightest halogens (fluorine, chlorine).All these new data have an impact on the development of radiolabeling strategies to turn 211At into radiopharmaceuticals. Inspired by the chemistry of iodine, the chemical approaches have sparsely evolved over the past decades and have long been limited to electrophilic halodemetalation reactions to form astatoaryl compounds. Conversely, recent developments have favored the use of the more stable At- species including the aromatic nucleophilic substitution with diaryliodonium salts or the copper-catalyzed halodeboronation of arylboron precursors. However, it is clear that new bonding modalities are necessary to improve the in vivo stability of 211At-labeled aryl compounds. The tools and data gathered over the past decade will contribute to instigate original strategies for overcoming the challenges offered by this enigmatic element. Alternatives to the C-At bond such as the B-At and the metal-At bonds are typical examples of exciting new axes of research.
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Affiliation(s)
- François Guérard
- Université de Nantes, CNRS, Inserm, CRCINA, F-44000 Nantes, France
| | | | - Lu Liu
- IMT-Atlantique Bretagne-Pays de la Loire - Nantes Campus, SUBATECH, UMR CNRS 6457, F-44000 Nantes, France
| | - Romain Eychenne
- Université de Nantes, CNRS, Inserm, CRCINA, F-44000 Nantes, France
- Arronax GIP, F-44817 Saint-Herblain, France
| | | | - Gilles Montavon
- IMT-Atlantique Bretagne-Pays de la Loire - Nantes Campus, SUBATECH, UMR CNRS 6457, F-44000 Nantes, France
| | - Nicolas Galland
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
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20
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Sahoo RK, Ray SS, Sahu S. A first principle study of hydrogen storage in titanium-doped small carbon clusters (C2nTin, n = 2–6). Struct Chem 2021. [DOI: 10.1007/s11224-020-01692-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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21
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Astatine Facing Janus: Halogen Bonding vs. Charge-Shift Bonding. Molecules 2021; 26:molecules26154568. [PMID: 34361716 PMCID: PMC8347445 DOI: 10.3390/molecules26154568] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 07/21/2021] [Accepted: 07/23/2021] [Indexed: 12/04/2022] Open
Abstract
The nature of halogen-bond interactions was scrutinized from the perspective of astatine, potentially the strongest halogen-bond donor atom. In addition to its remarkable electronic properties (e.g., its higher aromaticity compared to benzene), C6At6 can be involved as a halogen-bond donor and acceptor. Two-component relativistic calculations and quantum chemical topology analyses were performed on C6At6 and its complexes as well as on their iodinated analogues for comparative purposes. The relativistic spin–orbit interaction was used as a tool to disclose the bonding patterns and the mechanisms that contribute to halogen-bond interactions. Despite the stronger polarizability of astatine, halogen bonds formed by C6At6 can be comparable or weaker than those of C6I6. This unexpected finding comes from the charge-shift bonding character of the C–At bonds. Because charge-shift bonding is connected to the Pauli repulsion between the bonding σ electrons and the σ lone-pair of astatine, it weakens the astatine electrophilicity at its σ-hole (reducing the charge transfer contribution to halogen bonding). These two antinomic characters, charge-shift bonding and halogen bonding, can result in weaker At-mediated interactions than their iodinated counterparts.
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22
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Rios C, Molina B, Salcedo R. Capture of Fullerenes in Cages and Rings by Forming Metal-π Bond Arene Interactions. MATERIALS 2021; 14:ma14123424. [PMID: 34205520 PMCID: PMC8234524 DOI: 10.3390/ma14123424] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 06/04/2021] [Accepted: 06/11/2021] [Indexed: 12/02/2022]
Abstract
Nowadays, the task of the selectively capture of fullerene molecules from soot is the subject of several studies. The low solubility of fullerenes represents a drawback when the goal is to purify them and to carry out chemical procedures where they participate. There are different molecules that can act as a kind of cocoon, giving shelter to the fullerene cages in such a way that they can be included in a solution or can be extracted from a mix. In this work, a theoretical study of some known and new proposed organic molecules of this kind is presented. In all cases, the interaction occurs with the help of a metallic atom or ion which plays the role of a bridge, providing a place for a metallocene like interaction to occur. The thermodynamic arguments favoring the formation of this adduct species are addressed as well as the nature of the bond by means QTAIM parameters and frontier molecular orbitals analysis.
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Affiliation(s)
- Citlalli Rios
- Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Coyoacán, México City 04510, Mexico;
| | - Bertha Molina
- Facultad de Ciencias, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Coyoacán, México City 04510, Mexico;
| | - Roberto Salcedo
- Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Coyoacán, México City 04510, Mexico;
- Correspondence:
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23
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Klein J, Fleurat-Lessard P, Pilmé J. New insights in chemical reactivity from quantum chemical topology. J Comput Chem 2021; 42:840-854. [PMID: 33660292 DOI: 10.1002/jcc.26504] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 02/07/2021] [Accepted: 02/12/2021] [Indexed: 01/13/2023]
Abstract
Based on the quantum chemical topology of the modified electron localization function ELFx , an efficient and robust mechanistic methodology designed to identify the favorable reaction pathway between two reactants is proposed. We first recall and reshape how the supermolecular interaction energy can be evaluated from only three distinct terms, namely the intermolecular coulomb energy, the intermolecular exchange-correlation energy and the intramolecular energies of reactants. Thereafter, we show that the reactivity between the reactants is driven by the first-order variation in the coulomb intermolecular energy defined in terms of the response to changes in the number of electrons. Illustrative examples with the formation of the dative bond B-N involved in the BH3 NH3 molecule and the typical formation of the hydrogen bond in the canonical water dimer are presented. For these selected systems, our approach unveils a noticeable mimicking of Edual onto the DFT intermolecular interaction energy surface calculated between the both reactants. An automated reaction-path algorithm aimed to determine the most favorable relative orientations when the two molecules approach each other is also outlined.
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Affiliation(s)
- Johanna Klein
- Sorbonne Université, CNRS, Laboratoire de Chimie Théorique, Paris Cedex, France
| | - Paul Fleurat-Lessard
- Université de Bourgogne, UMR CNRS 6302, Université, Bourgogne Franche-Comté (UBFC), Institut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), 9 avenue Alain Savary, Dijon Cedex, 21078, France
| | - Julien Pilmé
- Sorbonne Université, CNRS, Laboratoire de Chimie Théorique, Paris Cedex, France
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24
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Burns JD, Tereshatov EE, Avila G, Glennon KJ, Hannaman A, Lofton KN, McCann LA, McCarthy MA, McIntosh LA, Schultz SJ, Tabacaru GC, Vonder Haar AL, Yennello SJ. Rapid recovery of At-211 by extraction chromatography. Sep Purif Technol 2021. [DOI: 10.1016/j.seppur.2020.117794] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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25
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de Macedo LGM, Neves ER, de Oliveira Só YA, Gargano R. Relativistic four-component potential energy curves for the lowest 23 covalent states of molecular astatine (At 2). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 245:118869. [PMID: 32920438 DOI: 10.1016/j.saa.2020.118869] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 08/13/2020] [Accepted: 08/18/2020] [Indexed: 06/11/2023]
Abstract
The potential energy curves (PECs) of all covalent states of Molecular Astatine (At2) have been investigated in this work within a four-component relativistic framework using the MOLFDIR program package. The ground state was determined using multireference configuration interaction with all single and double excitations including Davidson size-extensivity correction (MRCISD+Q) whereas the 22 excited states were treated by complete open shell configuration interaction (COSCI). Spectroscopic constants (Re,ωe,ωexe,ωeye, De,Be,αe,βe,Te) are presented for all states as well as vertical excitations obtained at COSCI, MRCISD and MRCISD+Q levels. In addition, it is also presented accurate extended Rydberg analytical form for the ground state X: (1)0g+.
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Affiliation(s)
| | - Eric Rafael Neves
- Universidade Federal de São João del Rei, Campus Centro Oeste Dona Lindu (CCO/UFSJ) Divinópolis, MG, CEP 35501-296, Brazil
| | | | - Ricardo Gargano
- Instituto de Física, Universidade de Brasília (UnB), P.O. Box 04455, Brasília, DF 70919-970, Brazil
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26
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Sarr S, Graton J, Rahali S, Montavon G, Galland N. Delocalized relativistic effects, from the viewpoint of halogen bonding. Phys Chem Chem Phys 2021; 23:4064-4074. [PMID: 33433548 DOI: 10.1039/d0cp05840h] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The ability of organic and inorganic compounds bearing both iodine and astatine atoms to form halogen-bond interactions is theoretically investigated. Upon inclusion of the relativistic spin-orbit interaction, the I-mediated halogen bonds are more affected than the At-mediated ones in many cases. This unusual outcome is disconnected from the behavior of iodine's electrons. The significant decrease of astatine electronegativity with the spin-orbit coupling triggers a redistribution of the electron density, which propagates relativistic effects toward the distant iodine atom. This mechanism can be controlled by introducing suitable substituents and, in particular, strengthened by taking advantage of electron-withdrawing inductive and mesomeric effects. Noticeable relativistic effects can actually be transferred to light atoms properties, e.g., the halogen-bond basicity of bridgehead carbon atoms doubled in propellane derivatives.
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Affiliation(s)
- Serigne Sarr
- Université de Nantes, CNRS, CEISAM UMR 6230, 44000 Nantes, France.
| | - Jérôme Graton
- Université de Nantes, CNRS, CEISAM UMR 6230, 44000 Nantes, France.
| | - Seyfeddine Rahali
- Department of Chemistry, College of Science and Arts, Qassim University, 51921 Ar Rass, Saudi Arabia
| | - Gilles Montavon
- IMT Atlantique, CNRS, SUBATECH UMR 6457, 44307 Nantes, France
| | - Nicolas Galland
- Université de Nantes, CNRS, CEISAM UMR 6230, 44000 Nantes, France.
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27
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Abd El-Mageed H. Zinc oxide nanoclusters and nanoparticles as a drug carrier for cisplatin and nedaplatin anti-cancer drugs, insights from DFT methods and MC simulation. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1842533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- H.R. Abd El-Mageed
- Micro-analysis and Environmental Research and Community Services Center, Faculty of Science, Beni-Suef University, Beni-Suef City, Egypt
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28
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Bassal F, Champion J, Pardoue S, Seydou M, Sabatié-Gogova A, Deniaud D, Questel JYL, Montavon G, Galland N. Questioning the Affinity of Electrophilic Astatine for Sulfur-containing Compounds: Unexpected Bindings Revealed. Inorg Chem 2020; 59:13923-13932. [DOI: 10.1021/acs.inorgchem.0c01553] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Fadel Bassal
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Julie Champion
- IMT Atlantique, CNRS, SUBATECH UMR 6457, F-44307 Nantes, France
| | - Sylvain Pardoue
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
- IMT Atlantique, CNRS, SUBATECH UMR 6457, F-44307 Nantes, France
| | - Mahamadou Seydou
- Université de Paris, CNRS, ITODYS UMR 7086, 15 rue J.A. de Baïf, F-75013 Paris, France
| | | | - David Deniaud
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | | | - Gilles Montavon
- IMT Atlantique, CNRS, SUBATECH UMR 6457, F-44307 Nantes, France
| | - Nicolas Galland
- Université de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
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29
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Leimbach D, Karls J, Guo Y, Ahmed R, Ballof J, Bengtsson L, Boix Pamies F, Borschevsky A, Chrysalidis K, Eliav E, Fedorov D, Fedosseev V, Forstner O, Galland N, Garcia Ruiz RF, Granados C, Heinke R, Johnston K, Koszorus A, Köster U, Kristiansson MK, Liu Y, Marsh B, Molkanov P, Pašteka LF, Ramos JP, Renault E, Reponen M, Ringvall-Moberg A, Rossel RE, Studer D, Vernon A, Warbinek J, Welander J, Wendt K, Wilkins S, Hanstorp D, Rothe S. The electron affinity of astatine. Nat Commun 2020; 11:3824. [PMID: 32733029 PMCID: PMC7393155 DOI: 10.1038/s41467-020-17599-2] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 07/08/2020] [Indexed: 01/08/2023] Open
Abstract
One of the most important properties influencing the chemical behavior of an element is the electron affinity (EA). Among the remaining elements with unknown EA is astatine, where one of its isotopes, 211At, is remarkably well suited for targeted radionuclide therapy of cancer. With the At- anion being involved in many aspects of current astatine labeling protocols, the knowledge of the electron affinity of this element is of prime importance. Here we report the measured value of the EA of astatine to be 2.41578(7) eV. This result is compared to state-of-the-art relativistic quantum mechanical calculations that incorporate both the Breit and the quantum electrodynamics (QED) corrections and the electron-electron correlation effects on the highest level that can be currently achieved for many-electron systems. The developed technique of laser-photodetachment spectroscopy of radioisotopes opens the path for future EA measurements of other radioelements such as polonium, and eventually super-heavy elements.
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Affiliation(s)
- David Leimbach
- CERN, Geneva, Switzerland.
- Department of Physics, University of Gothenburg, Gothenburg, Sweden.
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany.
| | - Julia Karls
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
| | - Yangyang Guo
- Van Swinderen Institute for Particle Physics and Gravity, University of Groningen, Groningen, The Netherlands
| | - Rizwan Ahmed
- National Centre for Physics (NCP), Islamabad, Pakistan
| | - Jochen Ballof
- CERN, Geneva, Switzerland
- Institut für Kernchemie, Johannes Gutenberg-Universität, Mainz, Germany
| | - Lars Bengtsson
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
| | | | - Anastasia Borschevsky
- Van Swinderen Institute for Particle Physics and Gravity, University of Groningen, Groningen, The Netherlands
| | - Katerina Chrysalidis
- CERN, Geneva, Switzerland
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany
| | - Ephraim Eliav
- School of Chemistry, Tel Aviv University, Tel Aviv, Israel
| | - Dmitry Fedorov
- Petersburg Nuclear Physics Institute - NRC KI, Gatchina, Russia
| | | | - Oliver Forstner
- Institut für Optik und Quantenelektronik, Friedrich-Schiller-Universität Jena, Jena, Germany
- Helmholtz-Institut Jena, Jena, Germany
| | | | | | | | - Reinhard Heinke
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany
| | | | - Agota Koszorus
- KU Leuven, Instituut voor Kern- en Stralingsfysica, Leuven, B-3001, Belgium
| | | | | | - Yuan Liu
- Physics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | | | - Pavel Molkanov
- Petersburg Nuclear Physics Institute - NRC KI, Gatchina, Russia
| | - Lukáš F Pašteka
- Department of Physical and Theoretical Chemistry & Laboratory for Advanced Materials, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia
| | | | - Eric Renault
- CEISAM, Université de Nantes, CNRS, Nantes, France
| | - Mikael Reponen
- Department of Physics, University of Jyväskylä, Jyväskylä, Finland
| | - Annie Ringvall-Moberg
- CERN, Geneva, Switzerland
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
| | | | - Dominik Studer
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany
| | - Adam Vernon
- School of Physics and Astronomy, The University of Manchester, Manchester, UK
| | - Jessica Warbinek
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany
| | - Jakob Welander
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
| | - Klaus Wendt
- Institut für Physik, Johannes Gutenberg-Universität, Mainz, Germany
| | | | - Dag Hanstorp
- Department of Physics, University of Gothenburg, Gothenburg, Sweden
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30
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Gomez Pech C, Haase PAB, Sergentu DC, Borschevsky A, Pilmé J, Galland N, Maurice R. Quantum chemical topology at the spin-orbit configuration interaction level: Application to astatine compounds. J Comput Chem 2020; 41:2055-2065. [PMID: 32618362 DOI: 10.1002/jcc.26373] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 05/25/2020] [Accepted: 06/08/2020] [Indexed: 11/08/2022]
Abstract
We report a methodology that allows the investigation of the consequences of the spin-orbit coupling by means of the QTAIM and ELF topological analyses performed on top of relativistic and multiconfigurational wave functions. In practice, it relies on the "state-specific" natural orbitals (NOs; expressed in a Cartesian Gaussian-type orbital basis) and their occupation numbers (ONs) for the quantum state of interest, arising from a spin-orbit configuration interaction calculation. The ground states of astatine diatomic molecules (AtX with X = AtF) and trihalide anions (IAtI- , BrAtBr- , and IAtBr- ) are studied, at exact two-component relativistic coupled cluster geometries, revealing unusual topological properties as well as a significant role of the spin-orbit coupling on these. In essence, the presented methodology can also be applied to the ground and/or excited states of any compound, with controlled validity up to including elements with active 5d, 6p, and/or 5f shells, and potential limitations starting with active 6d, 7p, and/or 6f shells bearing strong spin-orbit couplings.
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Affiliation(s)
- Cecilia Gomez Pech
- SUBATECH, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, Nantes, France.,CEISAM, UMR CNRS 6230, Université de Nantes, Nantes, France
| | - Pi A B Haase
- Van Swinderen Institute for Particle Physics and Gravity, University of Groningen, Groningen, The Netherlands
| | - Dumitru-Claudiu Sergentu
- SUBATECH, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, Nantes, France.,Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York, USA
| | - Anastasia Borschevsky
- Van Swinderen Institute for Particle Physics and Gravity, University of Groningen, Groningen, The Netherlands
| | - Julien Pilmé
- Sorbonne Université, CNRS, Laboratoire de Chimie Théorique, Paris, France
| | | | - Rémi Maurice
- SUBATECH, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, Nantes, France
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31
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Pilmé J. Quantum chemical topology from tight augmented core densities. J Comput Chem 2020; 41:1616-1627. [DOI: 10.1002/jcc.26204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 03/22/2020] [Accepted: 03/24/2020] [Indexed: 11/09/2022]
Affiliation(s)
- Julien Pilmé
- Sorbonne Université, CNRS; Laboratoire de Chimie Théorique; CC 137 - 4, place Jussieu F. 75252 PARIS CEDEX 05 France
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32
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Sarr S, Graton J, Montavon G, Pilmé J, Galland N. On the Interplay between Charge-Shift Bonding and Halogen Bonding. Chemphyschem 2020; 21:240-250. [PMID: 31793159 DOI: 10.1002/cphc.201901023] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Revised: 11/29/2019] [Indexed: 01/11/2023]
Abstract
The nature of halogen-bond interactions has been analysed from the perspective of the astatine element, which is potentially the strongest halogen-bond donor. Relativistic quantum calculations on complexes formed between halide anions and a series of Y3 C-X (Y=F to X, X=I, At) halogen-bond donors disclosed unexpected trends, e. g., At3 C-At revealing a weaker donating ability than I3 C-I despite a stronger polarizability. All the observed peculiarities have their origin in a specific component of C-Y bonds: the charge-shift bonding. Descriptors of the Quantum Chemical Topology show that the halogen-bond strength can be quantitatively anticipated from the magnitude of charge-shift bonding operating in Y3 C-X. The charge-shift mechanism weakens the ability of the halogen atom X to engage in halogen bonds. This outcome provides rationales for outlier halogen-bond complexes, which are at variance with the consensus that the halogen-bond strength scales with the polarizability of the halogen atom.
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Affiliation(s)
- Serigne Sarr
- CEISAM, UMR CNRS 6230, Université de Nantes, 44000, Nantes, France
| | - Jérôme Graton
- CEISAM, UMR CNRS 6230, Université de Nantes, 44000, Nantes, France
| | - Gilles Montavon
- SUBATECH, UMR CNRS 6457 IMT Atlantique, 44307, Nantes, France
| | - Julien Pilmé
- Laboratoire de Chimie Théorique, UMR CNRS 7616, Sorbonne Université, 75005, Paris, France
| | - Nicolas Galland
- CEISAM, UMR CNRS 6230, Université de Nantes, 44000, Nantes, France
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33
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Anderson JSM, Rodríguez JI, Ayers PW, Trujillo-González DE, Götz AW, Autschbach J, Castillo-Alvarado FL, Yamashita K. Molecular QTAIM Topology Is Sensitive to Relativistic Corrections. Chemistry 2019; 25:2538-2544. [PMID: 30393899 DOI: 10.1002/chem.201804464] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2018] [Indexed: 11/11/2022]
Abstract
The topology of the molecular electron density of benzene dithiol gold cluster complex Au4 -S-C6 H4 -S'-Au'4 changed when relativistic corrections were made and the structure was close to a minimum of the Born-Oppenheimer energy surface. Specifically, new bond paths between hydrogen atoms on the benzene ring and gold atoms appeared, indicating that there is a favorable interaction between these atoms at the relativistic level. This is consistent with the observation that gold becomes a better electron acceptor when relativistic corrections are applied. In addition to relativistic effects, here, we establish the sensitivity of molecular topology to basis sets and convergence thresholds for geometry optimization.
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Affiliation(s)
- James S M Anderson
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, Ontario, L8S4M1, Canada.,iTHES Research Group, RIKEN, 2-1, Hirosawa, Wako-shi, Saitama, 351-0198, Japan.,Instituto de Química, Universidad Nacional Autónoma de México, Universidad 300, Ciudad Universitaria, Ciudad de México, 04510, Mexico
| | - Juan I Rodríguez
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Paul W Ayers
- Department of Chemistry & Chemical Biology, McMaster University, Hamilton, Ontario, L8S4M1, Canada
| | - Daniel E Trujillo-González
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Andreas W Götz
- San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, 92093-0505, California, USA
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, 14260-3000, NY, USA
| | - Fray L Castillo-Alvarado
- Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, U.P. A.L.M, Col. San Pedro Zacatenco, C.P., 07738, Ciudad de México, México
| | - Koichi Yamashita
- Department of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
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34
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Graton J, Rahali S, Le Questel JY, Montavon G, Pilmé J, Galland N. Spin-orbit coupling as a probe to decipher halogen bonding. Phys Chem Chem Phys 2018; 20:29616-29624. [PMID: 30318527 DOI: 10.1039/c8cp05690k] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The nature of halogen-bond interactions is scrutinized from the perspective of astatine, the heaviest halogen element. Potentially the strongest halogen-bond donor, its ability is shown to be deeply affected by relativistic effects and especially by the spin-orbit coupling. Complexes between a series of XY dihalogens (X, Y = At, I, Br, Cl and F) and ammonia are studied with two-component relativistic quantum calculations, revealing that the spin-orbit interaction leads to a weaker halogen-bond donating ability of the diastatine species with respect to diiodine. In addition, the donating ability of the lighter halogen elements, iodine and bromine, in the AtI and AtBr species is more decreased by the spin-orbit coupling than that of astatine. This can only be rationalized from the evolution of a charge-transfer descriptor, the local electrophilicity ω+S,max, determined for the pre-reactive XY species. Finally, the investigation of the spin-orbit coupling effects by means of quantum chemical topology methods allows us to unveil the connection between the astatine propensity to form charge-shift bonds and the astatine ability to engage in halogen bonds.
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Affiliation(s)
- Jérôme Graton
- Université de Nantes, CEISAM, UMR CNRS 6230, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
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35
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Liu J, Lv B, Liu H, Li X, Yin W. Insight into the C-F bond mechanism of molecular analogs for antibacterial drug design. Nat Prod Res 2018. [DOI: 10.1080/14786419.2017.1340290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Junna Liu
- School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, China
| | - Biyu Lv
- School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, China
| | - Huaqing Liu
- School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, China
| | - Xin Li
- School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, China
| | - Weiping Yin
- School of Chemical Engineering and Pharmaceutics, Henan University of Science and Technology, Luoyang, China
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36
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Experimental and computational evidence of halogen bonds involving astatine. Nat Chem 2018; 10:428-434. [PMID: 29556053 DOI: 10.1038/s41557-018-0011-1] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 01/18/2018] [Indexed: 01/04/2023]
Abstract
The importance of halogen bonds-highly directional interactions between an electron-deficient σ-hole moiety in a halogenated compound and an acceptor such as a Lewis base-is being increasingly recognized in a wide variety of fields from biomedicinal chemistry to materials science. The heaviest halogens are known to form stronger halogen bonds, implying that if this trend continues down the periodic table, astatine should exhibit the highest halogen-bond donating ability. This may be mitigated, however, by the relativistic effects undergone by heavy elements, as illustrated by the metallic character of astatine. Here, the occurrence of halogen-bonding interactions involving astatine is experimentally evidenced. The complexation constants of astatine monoiodide with a series of organic ligands in cyclohexane solution were derived from distribution coefficient measurements and supported by relativistic quantum mechanical calculations. Taken together, the results show that astatine indeed behaves as a halogen-bond donor-a stronger one than iodine-owing to its much more electrophilic σ-hole.
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37
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De Santis M, Rampino S, Quiney HM, Belpassi L, Storchi L. Charge-Displacement Analysis via Natural Orbitals for Chemical Valence in the Four-Component Relativistic Framework. J Chem Theory Comput 2018; 14:1286-1296. [DOI: 10.1021/acs.jctc.7b01077] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Matteo De Santis
- Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
| | - Sergio Rampino
- Istituto di Scienze e Tecnologie Molecolari, Consiglio Nazionale delle Ricerche c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
| | - Harry M. Quiney
- ARC Centre of Excellence for Advanced Molecular Imaging, School of Physics, The University of Melbourne, 3010 Victoria, Australia
| | - Leonardo Belpassi
- Istituto di Scienze e Tecnologie Molecolari, Consiglio Nazionale delle Ricerche c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
- Consortium for Computational Molecular and Materials Sciences (CMS)2, Via Elce di Sotto, 8, 06123 Perugia, Italy
| | - Loriano Storchi
- Istituto di Scienze e Tecnologie Molecolari, Consiglio Nazionale delle Ricerche c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy
- Dipartimento di Farmacia, Università degli Studi ‘G. D’Annunzio’, Via dei Vestini 31, 66100 Chieti, Italy
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38
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Galland N, Montavon G, Le Questel JY, Graton J. Quantum calculations of At-mediated halogen bonds: on the influence of relativistic effects. NEW J CHEM 2018. [DOI: 10.1039/c8nj00484f] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
If astatine is generally a stronger halogen-bond donor than iodine, an inversion is sometimes observed owing to the spin–orbit coupling.
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Affiliation(s)
- N. Galland
- Laboratoire CEISAM
- UMR CNRS 6230
- Université de Nantes
- Nantes Cedex 3
- France
| | - G. Montavon
- Laboratoire SUBATECH
- UMR CNRS 6457
- IN2P3/EMN Nantes/Université de Nantes
- Nantes Cedex 3
- France
| | - J.-Y. Le Questel
- Laboratoire CEISAM
- UMR CNRS 6230
- Université de Nantes
- Nantes Cedex 3
- France
| | - J. Graton
- Laboratoire CEISAM
- UMR CNRS 6230
- Université de Nantes
- Nantes Cedex 3
- France
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39
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Amaouch M, Sergentu DC, Steinmetz D, Maurice R, Galland N, Pilmé J. The bonding picture in hypervalent XF 3 (X = Cl, Br, I, At) fluorides revisited with quantum chemical topology. J Comput Chem 2017; 38:2753-2762. [PMID: 28776714 DOI: 10.1002/jcc.24905] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Revised: 07/12/2017] [Accepted: 07/18/2017] [Indexed: 01/30/2023]
Abstract
Hypervalent XF3 (X = Cl, Br, I, At) fluorides exhibit T-shaped C2V equilibrium structures with the heavier of them, AtF3 , also revealing an almost isoenergetic planar D3h structure. Factors explaining this behavior based on simple "chemical intuition" are currently missing. In this work, we combine non-relativistic (ClF3 ), scalar-relativistic and two-component (X = Br - At) density functional theory calculations, and bonding analyses based on the electron localization function and the quantum theory of atoms in molecules. Typical signatures of charge-shift bonding have been identified at the bent T-shaped structures of ClF3 and BrF3 , while the bonds of the other structures exhibit a dominant ionic character. With the aim of explaining the D3h structure of AtF3 , we extend the multipole expansion analysis to the framework of two-component single-reference calculations. This methodological advance enables us to rationalize the relative stability of the T-shaped C2v and the planar D3h structures: the Coulomb repulsions between the two lone-pairs of the central atom and between each lone-pair and each fluorine ligand are found significantly larger at the D3h structures than at the C2v ones for X = Cl - I, but not with X = At. This comes with the increasing stabilization, along the XF3 series, of the planar D3h structure with respect to the global T-shaped C2v minima. Hence, we show that the careful use of principles that are at the heart of the valence shell electron pair repulsion model provides reasonable justifications for stable planar D3h structures in AX3 E2 systems. © 2017 Wiley Periodicals, Inc.
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Affiliation(s)
- Mohamed Amaouch
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Laboratoire de Chimie Théorique CC 137 - 4, place Jussieu, F. 75252, Paris Cedex 05, FranceE-mail:
| | - Dumitru-Claudiu Sergentu
- SUBATECH, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, 4 Rue A. Kastler, BP 20722, Nantes Cedex 3, 44307, France.,Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssini'ere, BP 92208, Nantes Cedex 3, 44322, France
| | - David Steinmetz
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Laboratoire de Chimie Théorique CC 137 - 4, place Jussieu, F. 75252, Paris Cedex 05, FranceE-mail:
| | - Rémi Maurice
- SUBATECH, UMR CNRS 6457, IN2P3/IMT Atlantique/Université de Nantes, 4 Rue A. Kastler, BP 20722, Nantes Cedex 3, 44307, France
| | - Nicolas Galland
- Laboratoire CEISAM, UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssini'ere, BP 92208, Nantes Cedex 3, 44322, France
| | - Julien Pilmé
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, Laboratoire de Chimie Théorique CC 137 - 4, place Jussieu, F. 75252, Paris Cedex 05, FranceE-mail:
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40
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Lepetit C, Fau P, Fajerwerg K, Kahn ML, Silvi B. Topological analysis of the metal-metal bond: A tutorial review. Coord Chem Rev 2017. [DOI: 10.1016/j.ccr.2017.04.009] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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41
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42
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Sergentu DC, David G, Montavon G, Maurice R, Galland N. Scrutinizing "Invisible" astatine: A challenge for modern density functionals. J Comput Chem 2016; 37:1345-54. [PMID: 27059181 DOI: 10.1002/jcc.24326] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 01/18/2016] [Accepted: 01/19/2016] [Indexed: 12/20/2022]
Abstract
The main-group 6p elements did not receive much attention in the development of recent density functionals. In many cases it is still difficult to choose among the modern ones a relevant functional for various applications. Here, we illustrate the case of astatine species (At, Z = 85) and we report the first, and quite complete, benchmark study on several properties concerning such species. Insights on geometries, transition energies and thermodynamic properties of a set of 19 astatine species, for which reference experimental or theoretical data has been reported, are obtained with relativistic (two-component) density functional theory calculations. An extensive set of widely used functionals is employed. The hybrid meta-generalized gradient approximation (meta-GGA) PW6B95 functional is overall the best choice. It is worth noting that the range-separated HSE06 functional as well as the old and very popular B3LYP and PBE0 hybrid-GGAs appear to perform quite well too. Moreover, we found that astatine chemistry in solution can accurately be predicted using implicit solvent models, provided that specific parameters are used to build At cavities. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Dumitru-Claudiu Sergentu
- Laboratoire SUBATECH, UMR CNRS 6457, IN2P3/EMN Nantes/Université De Nantes, 4 Rue Alfred Kastler, BP 20722, Nantes Cedex 3, 44307, France.,Laboratoire CEISAM, UMR CNRS 6230, Université De Nantes, 2 Rue De La Houssinière, BP 92208, Nantes Cedex 3, 44322, France
| | - Grégoire David
- Laboratoire CEISAM, UMR CNRS 6230, Université De Nantes, 2 Rue De La Houssinière, BP 92208, Nantes Cedex 3, 44322, France
| | - Gilles Montavon
- Laboratoire SUBATECH, UMR CNRS 6457, IN2P3/EMN Nantes/Université De Nantes, 4 Rue Alfred Kastler, BP 20722, Nantes Cedex 3, 44307, France
| | - Rémi Maurice
- Laboratoire SUBATECH, UMR CNRS 6457, IN2P3/EMN Nantes/Université De Nantes, 4 Rue Alfred Kastler, BP 20722, Nantes Cedex 3, 44307, France
| | - Nicolas Galland
- Laboratoire CEISAM, UMR CNRS 6230, Université De Nantes, 2 Rue De La Houssinière, BP 92208, Nantes Cedex 3, 44322, France
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43
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(211)At-labeled agents for alpha-immunotherapy: On the in vivo stability of astatine-agent bonds. Eur J Med Chem 2016; 116:156-164. [PMID: 27061979 DOI: 10.1016/j.ejmech.2016.03.082] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Revised: 03/22/2016] [Accepted: 03/26/2016] [Indexed: 11/23/2022]
Abstract
The application of (211)At to targeted cancer therapy is currently hindered by the rapid deastatination that occurs in vivo. As the deastatination mechanism is unknown, we tackled this issue from the viewpoint of the intrinsic properties of At-involving chemical bonds. An apparent correlation has been evidenced between in vivo stability of (211)At-labeled compounds and the At-R (R = C, B) bond enthalpies obtained from relativistic quantum mechanical calculations. Furthermore, we highlight important differences in the nature of the At-C and At-B bonds of interest, e.g. the opposite signs of the effective astatine charges, which implies different stabilities with respect to the biological medium. Beyond their practical use for rationalizing the labeling protocols used for (211)At, the proposed computational approach can readily be used to investigate bioactive molecules labeled with other heavy radionuclides.
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Sergentu DC, Teze D, Sabatié-Gogova A, Alliot C, Guo N, Bassal F, Silva ID, Deniaud D, Maurice R, Champion J, Galland N, Montavon G. Advances on the Determination of the Astatine Pourbaix Diagram: Predomination of AtO(OH)2
−
over At−
in Basic Conditions. Chemistry 2016; 22:2964-71. [DOI: 10.1002/chem.201504403] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Indexed: 11/10/2022]
Affiliation(s)
- Dumitru-Claudiu Sergentu
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
- CEISAM, UMR CNRS 6230; Université de Nantes; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - David Teze
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
- CEISAM, UMR CNRS 6230; Université de Nantes; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Andréa Sabatié-Gogova
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
| | - Cyrille Alliot
- GIP ARRONAUX; 1 rue Aronnax, CS 10112 44817 Saint-Herblain Cedex France
| | - Ning Guo
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
| | - Fadel Bassal
- CEISAM, UMR CNRS 6230; Université de Nantes; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Isidro Da Silva
- CEMHTI, UPR CNRS 3079, Site Cyclotron CS30058; 3 A rue de la Férolerie 45071 Orléans Cedex 2 France
| | - David Deniaud
- CEISAM, UMR CNRS 6230; Université de Nantes; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Rémi Maurice
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
| | - Julie Champion
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
| | - Nicolas Galland
- CEISAM, UMR CNRS 6230; Université de Nantes; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Gilles Montavon
- SUBATECH, UMR CNRS 6457; IN2P3/EMN Nantes/Université de Nantes; 4 rue Alfred Kastler, BP 20722 44307 Nantes Cedex 3 France
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Amaouch M, Montavon G, Galland N, Pilmé J. What can tell the quantum chemical topology on carbon–astatine bonds? Mol Phys 2015. [DOI: 10.1080/00268976.2015.1120361] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Mohamed Amaouch
- Sorbonne Universités, UPMC Université Paris 06, Laboratoire de Chimie Théorique, Paris, France
- CNRS UMR 7616, Laboratoire de Chimie Théorique, Paris, France
| | - Gilles Montavon
- SUBATECH, UMR CNRS 6457, IN2P3/EMN Nantes/Université de Nantes, Nantes, France
| | | | - Julien Pilmé
- Sorbonne Universités, UPMC Université Paris 06, Laboratoire de Chimie Théorique, Paris, France
- CNRS UMR 7616, Laboratoire de Chimie Théorique, Paris, France
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Demidov Y, Zaitsevskii A. A comparative study of molecular hydroxides of element 113 (I) and its possible analogs: Ab initio electronic structure calculations. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.08.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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47
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Sergentu DC, Amaouch M, Pilmé J, Galland N, Maurice R. Electronic structures and geometries of the XF3 (X = Cl, Br, I, At) fluorides. J Chem Phys 2015; 143:114306. [DOI: 10.1063/1.4930609] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Li X, Geng ZD. Investigation into the metallophilic interaction in coinage-metal halides: an ab initio study of CMX (CM = Cu and Ag, X = F - I). J Mol Model 2015. [PMID: 26198269 DOI: 10.1007/s00894-015-2745-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Investigation of the metallophilic interactions of the title coinage-metal halide series, CMX (CM = Ag and Cu, X = F - I), and their cationic and anionic systems, were performed at CCSD(T) theoretical level with extended basis sets. Natural bond orbital analysis shows that the interactions come mainly from the overlap of the sp hybrid on the halogen and the spd hybrid on the coinage-metal atom. Electron density deformation analysis demonstrates a pronounced electron accumulation in the interaction region between the heavier X and the coinage-metal atoms, and suggests a covalent character of the interaction. Positive Laplacian values and negative total energy densities at bond critical points (BCPs) show the "intermediate" character of the interactions. Reduced density gradient analysis visualizes the interaction; a linear relationship between energy densities and eigenvalues can be found at BCPs.
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Affiliation(s)
- Xinying Li
- Institute for Computational Materials Science, School of Physics and Electronics, Henan University, Kaifeng, 475004, People's Republic of China,
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Maurice R, Réal F, Gomes ASP, Vallet V, Montavon G, Galland N. Effective bond orders from two-step spin–orbit coupling approaches: The I2, At2, IO+, and AtO+ case studies. J Chem Phys 2015; 142:094305. [DOI: 10.1063/1.4913738] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Rémi Maurice
- SUBATECH, CNRS UMR 6457, IN2P3/EMN Nantes/Université de Nantes, 4 rue Alfred Kastler, BP 20722, 44307 Nantes Cedex 3, France
| | - Florent Réal
- Laboratoire PhLAM, CNRS UMR 8523, Université de Lille, 59655 Villeneuve d’Ascq Cedex, France
| | | | - Valérie Vallet
- Laboratoire PhLAM, CNRS UMR 8523, Université de Lille, 59655 Villeneuve d’Ascq Cedex, France
| | - Gilles Montavon
- SUBATECH, CNRS UMR 6457, IN2P3/EMN Nantes/Université de Nantes, 4 rue Alfred Kastler, BP 20722, 44307 Nantes Cedex 3, France
| | - Nicolas Galland
- CEISAM, UMR CNRS 6230, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
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