Microcalorimetric determination of thermodynamic parameters for ionophore-siderophore host-guest complex formation

Amino acid/crown ether hybrid materials: how charge affects liquid crystalline self-assembly

To probe the influence of electrostatic interactions on the mesomorphic self-assembly and phase behaviour of hybrid liquid crystals a series of crown ether/tyrosine hybrid systems was prepared by Steglich esterification of alkyl N-(tert-butoxycarbonyl)-l-tyrosinates with 4-carboxybenzo[15]crown-5 and 4-carboxybenzo[18]crown-6. The obtained derivatives allowed further manipulations at the NH functional group and complexation of the crown ether unit with NaI to give neutral or charged hybrid materials. All compounds were investigated by differential scanning calorimetry (DSC), polarizing optical microscopy (POM) and X-ray diffraction (XRD) measurements. Neither the variation of the N-protecting group, introduction of charge at the N-terminus nor anion exchange (Cl vs. I) resulted in mesomorphism. In contrast, N-Boc-protected and unprotected hybrids formed rectangular columnar (Col_r) mesophases with phase widths up to 35 K. NaI complexation switched these neutral thermotropic derivatives into ionic liquid crystals (ILCs) and induced a change of mesophase type from Col_r to smectic A (SmA). A comparison of experimentally obtained layer distances and theoretically calculated molecular lengths indicated bilayer SmA formation with interdigitated alkyl chains. Packing models for both mesophase types are proposed and discussed with respect to stabilizing interactions.

Biodegradable siderophores: survey on their production, chelating and complexing properties

The academic and industrial research on the interactions of complexing agents with the environment has received more attention for more than half a century ago and has always been concerned with the applications of chelating agents in the environment. In contrast, in recent years, an increasing scholarly interest has been demonstrated in the chemical and biological degradation of chelating agents. This is reflected by the increasing number of chelating agents-related publications between 1950 and middle of 2016. Consequently, the discovery of new green biodegradable chelating agents is of great importance and has an impact in the non-biodegradable chelating agent’s replacement with their green chemistry analogs. To acquire iron, many bacteria growing aerobically, including marine species, produce siderophores, which are low-molecular-weight compounds produced to facilitate acquisition of iron. To date and to the best of our knowledge, this is a concise and complete review article of the current and previous relevant studies conducted in the field of production, purification of siderophore compounds and their metal complexes, and their roles in biology and medicine.

Selective Guest Encapsulation by a Cobalt-Assembled Cage Molecule

Metal-assembled resorcinarene-based cages enclose space and entrap organic molecules from water. Addition of cobalt(II) ions to a neutral, aqueous solution of a resorcinarene that has iminodiacetic acids attached to its upper rim results in the formation of cages. These cages not only entrap organic molecules, but they do so in a selective manner. Guests with optimum size, shape, and polarity are preferentially entrapped. For example, selection of p-xylene is twenty thousand times more favorable than that of m-xylene. The enthalpy of resorcinarene deprotonation and cage formation was calculated by performing calorimetry studies and ranged from -305 to -348 kJ mol(-1). The change in enthalpy of guest encapsulation varied by as much as 43 kJ mol(-1). The differences in change in free energy of guest encapsulation varied by -16 kJ mol(-1). The changes in enthalpy and free energy of guest encapsulation were used to calculate the changes in entropy, which ranged from -97 to +37 J mol(-1) K(-1). An enthalpy-entropy compensation of guest encapsulation was observed.

Ferrioxamine B Analogues: Targeting the FoxA Uptake System in the Pathogenic Yersinia enterocolitica

A series of ferrioxamine B analogues that target the bacterium Yersinia enterocolitica were prepared. These iron carriers are composed of three hydroxamate-containing monomeric units. Two identical monomers consist of N-hydroxy-3-aminopropionic acid coupled with beta-alanine, and a third unit at the amino terminal is composed of N-hydroxy-3-aminopropionic acid and one of the following amino acids: beta-alanine (1a), phenylalanine (1b), cyclohexylalanine (1c), or glycine (1d). Thermodynamic results for representatives of the analogues have shown a strong destabilization (3-4 orders of magnitude) of the ferric complexes with respect to ferrioxamine B, probably due to shorter spacers and a more strained structure around the metal center. No significant effect of the variations at the N-terminal has been observed on the stability of the ferric complexes. By contrast, using in vivo radioactive uptake experiments, we have found that these modifications have a substantial effect on the mechanism of iron(III) uptake in the pathogenic bacteria Yersinia enterocolitica. Analogues 1a and 1d were utilized by the ferrioxamine B uptake system (FoxA), while 1b and 1c either used different uptake systems or were transported to the microbial cell nonspecifically by diffusion via the cell membrane. Transport via the FoxA system was also confirmed by uptake experiments with the FoxA deficient strain of Yersinia enterocolitica. A fluorescent marker, attached to 1a in a way that did not interfere with its biological activity, provided additional means to monitor the uptake mechanism by fluorescence techniques. Of particular interest is the observation that 1a was utilized by the uptake system of ferrioxamine B in Yersinia enterocolitica (FoxA) but failed to use the ferrioxamine uptake route in Pseudomonas putida. Here, we present a case in which biomimetic siderophore analogues deliberately designed for a particular bacterium can distinguish between related uptake systems of different microorganisms.

Crystal and Molecular Structures of Ionophore−Siderophore Host−Guest Supramolecular Assemblies Relevant to Molecular Recognition

Ionophore-siderophore host-guest assemblies composed of 18-crown-6 and ferrioxamine B, benzo-18-crown-6 and ferrioxamine B, and cis-syn-cis-dicyclohexano-18-crown-6 and ferrioxamine B were successfully crystallized, and their structures were determined by single-crystal X-ray diffraction. All three crystal lattices also include solvated Mg(II) and perchlorate ions. The ionophore-siderophore host-guest assembly is noncovalently held together by a hydrogen bonding interaction between the pendant protonated amine in the second coordination sphere of ferrioxamine B and the hydrogen bond acceptor oxygen atoms in the crown ether. The crystals of 18-crown-6:ferrioxamine B host-guest assembly are monoclinic, with space group P2(1)/c, and four molecules per unit cell with dimensions a = 19.8327(11) A, b = 20.4111(11) A, c = 15.1698(8) A, and beta = 96.435(1) degrees. The crystals of benzo-18-crown-6:ferrioxamine B host-guest assembly are triclinic, with space group P(-)1, and two molecules per unit cell with dimensions a = 11.1747(10) A, b = 16.0580(15) A, c = 18.4175(17) A, alpha = 80.469(3) degrees, beta = 81.481(3) degrees and gamma = 70.212(2) degrees. The crystals of cis-syn-cis-dicyclohexano-18-crown-6:ferrioxamine B host-guest assembly are monoclinic, with space group P2(1)/c, and four molecules per unit cell with dimensions a = 20.1473(13) A, b = 21.5778(15) A, c = 14.8013(10) A, and beta = 94.586(2) degrees. The crystal structures of all three host-guest assemblies contain a racemic mixture of Lambda-N-cis, cis and Delta-N-cis, cis coordination isomers of ferrioxamine B. The crystal structures indicate that the steric rigidity of the benzo-18-crown-6 and cis-syn-cis-dicyclohexano-18-crown-6 cavity has a pronounced effect on the conformation of the crown ring and ultimately on the hydrogen bonding interactions between the crown ethers and ferrioxamine B. The structural parameters and the conformational features of the ferrioxamine B guests compare very well with each other and with those of the ferrioxamine B structure obtained in the absence of a host. Structural features relevant to siderophore molecular recognition are discussed.

Carrier-facilitated bulk liquid membrane transport of iron(III)-siderophore complexes utilizing first coordination sphere recognition

Carrier-facilitated bulk liquid membrane (BLM) transport from an aqueous source phase through a chloroform membrane phase to an aqueous receiving phase was studied for various hydrophilic synthetic and naturally occurring Fe(III)-siderophore complexes using first coordination sphere recognition. Iron transport systems were designed such that two cis coordination sites on a hydrophilic Fe(III) complex are occupied by labile aquo ligands, while the other four coordination sites are blocked by strong tetradentate ligands (siderophores). The labile aquo coordination sites can be "recognized" by a liquid membrane-bound hydrophobic bidentate ligand, which carries the hydrophilic Fe(III)-siderophore complex across the hydrophobic membrane to an aqueous receiving phase. The system is further designed for uphill transport of Fe(III) against a concentration gradient, driven by anti-port H(+) transport. Three tetradentate siderophore and siderophore mimic ligands were investigated: rhodotorulic acid (H(2)L(RA)), alcaligin (H(2)L(AG)), and N,N'-dihydroxy-N,N'-dimethyldecanediamide (H(2)L(8)). Flux values for the transport of Fe(L(x))(OH(2))(2)(+) (x = RA, AG, 8) facilitated by the hydrophobic lauroyl hydroxamic acid (HLHA) membrane carrier were the highest when x = 8, which is attributed to substrate lipophilicity. Ferrioxamine B (FeHDFB(+)) was also selectively transported through a BLM by HLHA. The process involves partial dechelation of ferrioxamine B to produce the tetradentate form of the complex (Fe(H(2)DFB)(OH(2))(2)(2+)), followed by ternary complex formation with HLHA (Fe(H(2)DFB)(LHA)(+)) and transport across the membrane into the receiving phase. Uphill transport of ferrioxamine B was confirmed by increased flux as [H(+)](source phase) < [H(+)](receiving phase). The membrane flux of ferrioxamine B occurs near neutral pH, as evidence that ternary complex formation and ligand exchange are viable processes at the membrane/receptor surface of microbial cells.

Optimization of the lariat ether carboxylic acid host structure for ferrioxamine B: demonstration of a second coordination shell chelate effect

Host-guest supramolecular assembly formation constants involving the second-sphere complexation of the siderophore ferrioxamine B (FeHDFB(+)) by a lariat ether carboxylic acid host (L(n+2)COOH) in wet chloroform were obtained from liquid-liquid extractions at pH values above and below the host pK(a) (approximately 5.3). The host-guest formation constants, K(a), determined at pH = 3.2 for the assemblies [FeHDFB(+),L(n+2)COOH,ClO(4)(-)] (n = 4, 7, 10, 15) in wet chloroform are similar to those of the parent crown ether, benzo-18-crown-6. At pH = 9.3, the lariat ethers are ionized, and this results in a more stable assembly, [FeHDFB(+),L(n+2)COO(-)], as measured by the host-guest formation constant, K(app). This enhanced stability is shown to be a function of the lariat ether sidearm chain length (n = 4, 7, 10, 15) and is corroborated by molecular modeling calculations. Additionally, molecular modeling and extraction data demonstrate that there is an optimum lariat ether sidearm chain length with respect to host-guest assembly stability as measured by K(app). We attribute the enhanced stability effect of the ionized lariat ether in the host-guest assembly [FeHDFB(+),L(n+2)COO(-)], relative to [FeHDFB(+),L(n)+2)COOH,ClO(4)(-)] or to [FeHDFB(+),B18C6,ClO(4)(-)], to a second coordination shell chelate effect.