1
|
Buhrke D, Hildebrandt P. Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem Rev 2019; 120:3577-3630. [PMID: 31814387 DOI: 10.1021/acs.chemrev.9b00429] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The mechanistic understanding of protein functions requires insight into the structural and reaction dynamics. To elucidate these processes, a variety of experimental approaches are employed. Among them, time-resolved (TR) resonance Raman (RR) is a particularly versatile tool to probe processes of proteins harboring cofactors with electronic transitions in the visible range, such as retinal or heme proteins. TR RR spectroscopy offers the advantage of simultaneously providing molecular structure and kinetic information. The various TR RR spectroscopic methods can cover a wide dynamic range down to the femtosecond time regime and have been employed in monitoring photoinduced reaction cascades, ligand binding and dissociation, electron transfer, enzymatic reactions, and protein un- and refolding. In this account, we review the achievements of TR RR spectroscopy of nearly 50 years of research in this field, which also illustrates how the role of TR RR spectroscopy in molecular life science has changed from the beginning until now. We outline the various methodological approaches and developments and point out current limitations and potential perspectives.
Collapse
Affiliation(s)
- David Buhrke
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
| | - Peter Hildebrandt
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
| |
Collapse
|
2
|
Takaya T, Anan M, Iwata K. Vibrational relaxation dynamics of β-carotene and its derivatives with substituents on terminal rings in electronically excited states as studied by femtosecond time-resolved stimulated Raman spectroscopy in the near-IR region. Phys Chem Chem Phys 2018; 20:3320-3327. [DOI: 10.1039/c7cp06343a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Time-resolved near-IR stimulated Raman spectroscopy indicates acceleration of vibrational relaxation in carotenoids by carbonyl substitution on their peripheral rings.
Collapse
Affiliation(s)
- Tomohisa Takaya
- Department of Chemistry
- Faculty of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| | - Masato Anan
- Department of Chemistry
- Faculty of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| | - Koichi Iwata
- Department of Chemistry
- Faculty of Science
- Gakushuin University
- Tokyo 171-8588
- Japan
| |
Collapse
|
3
|
Shim S, Mathies RA. Development of a Tunable Femtosecond Stimulated Raman Apparatus and Its Application to β-Carotene. J Phys Chem B 2008; 112:4826-32. [DOI: 10.1021/jp710518y] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sangdeok Shim
- Department of Chemistry, University of California, Berkeley, California 94720
| | - Richard A. Mathies
- Department of Chemistry, University of California, Berkeley, California 94720
| |
Collapse
|
4
|
Polívka T, Sundström V. Ultrafast dynamics of carotenoid excited States-from solution to natural and artificial systems. Chem Rev 2004; 104:2021-71. [PMID: 15080720 DOI: 10.1021/cr020674n] [Citation(s) in RCA: 638] [Impact Index Per Article: 31.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tomás Polívka
- Department of Chemical Physics, Lund University, Box 124, SE-221 00 Lund, Sweden.
| | | |
Collapse
|
5
|
McCamant DW, Kim JE, Mathies RA. Vibrational Relaxation in beta-Carotene Probed by Picosecond Stokes and Anti-Stokes Resonance Raman Spectroscopy. J Phys Chem A 2002; 106:6030-8. [PMID: 17235377 PMCID: PMC1776166 DOI: 10.1021/jp0203595] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Picosecond time-resolved Stokes and anti-Stokes resonance Raman spectra of all-trans-beta-carotene are obtained and analyzed to reveal the dynamics of excited-state (S(1)) population and decay, as well as ground-state vibrational relaxation. Time-resolved Stokes spectra show that the ground state recovers with a 12.6 ps time constant, in agreement with the observed decay of the unique S(1) Stokes bands. The anti-Stokes spectra exhibit no peaks attributable to the S(1) (2A(g) (-)) state, indicating that vibrational relaxation in S(1) must be nearly complete within 2 ps. After photoexcitation there is a large increase in anti-Stokes scattering from ground-state modes that are vibrationally excited through internal conversion. The anti-Stokes data are fit to a kinetic scheme in which the C=C mode relaxes in 0.7 ps, the C-C mode relaxes in 5.4 ps and the C-CH(3) mode relaxes in 12.1 ps. These results are consistent with a model for S(1)-S(0) internal conversion in which the C=C mode is the primary acceptor, the C-C mode is a minor acceptor, and the C-CH(3) mode is excited via intramolecular vibrational energy redistribution.
Collapse
Affiliation(s)
- David W McCamant
- Department of Chemistry, University of California, Berkeley, California 94720
| | | | | |
Collapse
|
6
|
Nakabayashi T, Kamo S, Sakuragi H, Nishi N. Time-Resolved Raman Studies of Photoionization of Aromatic Compounds in Polar Solvents: Picosecond Relaxation Dynamics of Aromatic Cation Radicals. J Phys Chem A 2001. [DOI: 10.1021/jp0110105] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Takakazu Nakabayashi
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan, and Department of Chemistry, University of Tsukuba, Tennodai, Tsukuba, 305-8571, Japan
| | - Satoshi Kamo
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan, and Department of Chemistry, University of Tsukuba, Tennodai, Tsukuba, 305-8571, Japan
| | - Hirochika Sakuragi
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan, and Department of Chemistry, University of Tsukuba, Tennodai, Tsukuba, 305-8571, Japan
| | - Nobuyuki Nishi
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan, and Department of Chemistry, University of Tsukuba, Tennodai, Tsukuba, 305-8571, Japan
| |
Collapse
|
7
|
Akimoto S, Yamazaki I, Takaichi S, Mimuro M. Excitation relaxation of carotenoids within the S2 state probed by the femtosecond fluorescence up-conversion method. Chem Phys Lett 1999. [DOI: 10.1016/s0009-2614(99)01015-5] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
8
|
Nakabayashi T, Okamoto H, Tasumi M. Vibrational Relaxation Dynamics of trans-Stilbene in the Lowest Excited Singlet State. Pump and Probe Wavelength Dependencies of the Picosecond Time-Resolved Anti-Stokes Raman Spectrum. J Phys Chem A 1998. [DOI: 10.1021/jp982287g] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takakazu Nakabayashi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338-8570, Japan
| | - Hiromi Okamoto
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338-8570, Japan
| | - Mitsuo Tasumi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338-8570, Japan
| |
Collapse
|
9
|
Okamoto H, Ogura M, Nakabayashi T, Tasumi M. Sub-picosecond excited-state dynamics of a carotenoid (spirilloxanthin) in the light-harvesting systems of Chromatium vinosum. Chem Phys 1998. [DOI: 10.1016/s0301-0104(98)00207-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
10
|
Zhang JP, Chen CH, Koyama Y, Nagae H. Vibrational Relaxation and Redistribution in the 2Ag- State of all-trans-Lycopene As Revealed by Picosecond Time-Resolved Absorption Spectroscopy. J Phys Chem B 1998. [DOI: 10.1021/jp9728058] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jian-Ping Zhang
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan
| | - Chun-Hai Chen
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan
| | - Yasushi Koyama
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan
| | - Hiroyoshi Nagae
- Kobe City University of Foreign Studies, Gakuen Higashimachi, Nishi-ku, Kobe 651-21, Japan
| |
Collapse
|
11
|
Nakabayashi T, Okamoto H, Tasumi M. Probe-Wavelength Dependency of Picosecond Anti-Stokes Raman Spectra of trans-Stilbene in the S1 State. J Phys Chem A 1997. [DOI: 10.1021/jp971495q] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takakazu Nakabayashi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338, Japan
| | - Hiromi Okamoto
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338, Japan
| | - Mitsuo Tasumi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan, and Department of Chemistry, Faculty of Science, Saitama University, Urawa, Saitama 338, Japan
| |
Collapse
|
12
|
Okamoto H, Nakabayashi T, Tasumi M. Analysis of Anti-Stokes Resonance Raman Excitation Profiles as a Method for Studying Vibrationally Excited Molecules. J Phys Chem A 1997. [DOI: 10.1021/jp963302p] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hiromi Okamoto
- Research Centre for Spectrochemistry and Department of Chemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| | - Takakazu Nakabayashi
- Research Centre for Spectrochemistry and Department of Chemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| | - Mitsuo Tasumi
- Research Centre for Spectrochemistry and Department of Chemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| |
Collapse
|
13
|
Nakabayashi T, Okamoto H, Tasumi M. Probe-Wavelength Dependence of Picosecond Time-Resolved Anti-Stokes Raman Spectrum of Canthaxanthin: Determination of Energy States of Vibrationally Excited Molecules Generated via Internal Conversion from the Lowest Excited Singlet State. J Phys Chem A 1997. [DOI: 10.1021/jp963303h] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takakazu Nakabayashi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| | - Hiromi Okamoto
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| | - Mitsuo Tasumi
- Department of Chemistry and Research Centre for Spectrochemistry, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113, Japan
| |
Collapse
|
14
|
Femtosecond dynamics of carotenoid-to-bacteriochlorophyll a energy transfer in the light-harvesting antenna complexes from the purple bacterium Chromatium purpuratum. Chem Phys 1996. [DOI: 10.1016/0301-0104(96)00172-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
15
|
Huang Y, Hopkins JB. Femtosecond Resonance Raman Investigation of Four Univalent Bipyridinium Radicals. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp9520198] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yixiang Huang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803
| | - J. B. Hopkins
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803
| |
Collapse
|
16
|
Andersson PO, Gillbro T. Photophysics and dynamics of the lowest excited singlet state in long substituted polyenes with implications to the very long‐chain limit. J Chem Phys 1995. [DOI: 10.1063/1.469672] [Citation(s) in RCA: 129] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
17
|
Assignment and anharmonicity analysis of overtone and combination bands observed in the resonance Raman spectra of carotenoids. ACTA ACUST UNITED AC 1994. [DOI: 10.1016/0584-8539(94)e0057-h] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
18
|
Deak J, Richard L, Pereira M, Chui HL, Miller RJ. Picosecond phase grating spectroscopy: applications to bioenergetics and protein dynamics. Methods Enzymol 1994; 232:322-60. [PMID: 8057868 DOI: 10.1016/0076-6879(94)32054-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- J Deak
- Department of Chemistry, University of Rochester, New York 14627
| | | | | | | | | |
Collapse
|
19
|
Cis-stilbene photochemistry: direct observation of product formation and relaxation through two-color UV pump-probe Raman spectroscopy. Chem Phys 1993. [DOI: 10.1016/0301-0104(93)80224-w] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
20
|
|