Proton-transfer kinetics in solids: tautomerism in free base porphines by nitrogen-15 CPMAS NMR

Free-Base Corrole Anion

Free-base corroles have long been known to be acidic, readily undergoing deprotonation by mild bases and in polar solvents. The conjugate base, however, has not been structurally characterized until now. Presented here is a first crystal structure of a free-base corrole anion, derived from tris(p-cyanophenyl)corrole, as the tetrabuylammonium salt. The low-temperature (100 K) structure reveals localized hydrogens on a pair of opposite pyrrole nitrogens. DFT calculations identify such a structure as the global minimum but also point to two cis tautomers only 4-7 kcal/mol above the ground state. In terms of free energy, however, the cis tautomers are above or essentially flush with the trans-to-cis barrier so the cis tautomers are unlikely to exist or be observed as true intermediates. Thus, the hydrogen bond within each dipyrrin unit on either side of the molecular pseudo-C2 axis through C10 (i.e., between pyrrole rings A and B or between C and D) qualifies as or closely approaches a low-barrier hydrogen bond. Proton migration across the pseudo-C2 axis entails much higher activation energies >20 kcal/mol, reflecting the relative rigidity of the molecule along the C1-C19 pyrrole-pyrrole linkage.

NH Tautomerism of N-Confused Porphyrin: Solvent/Substituent Effects and Isomerization Mechanism

The effects of substituents and solvents on the NH tautomerism of N-confused porphyrin (2) were investigated. The structures, electronic states, and aromaticity of NH tautomers (2-2H and 2-3H) were studied by absorption and nuclear magnetic resonance (¹H, ¹³C, and ¹⁵N) spectroscopies, single-crystal X-ray diffraction analysis, and theoretical calculations. The relative stability of the tautomers is highly affected by solvents, with the 3H-type tautomer being more stable in nonpolar solvents, while the 2H-type tautomer being highly stabilized in polar solvents with high donor numbers such as N,N-dimethylformamide (DMF), pyridine, and acetone. Electron-withdrawing groups on the meso-aryl substituents as well as the methyl group at the ortho position also stabilize the 2H-type tautomer. Kinetically, the tautomerism rate is significantly influenced by solvent and concentration, and a particularly large activation entropy (ΔS^⧧) is obtained in pyridine. The first-order deuterium isotope effect on the reaction rates of NH tautomerism (k_H/k_D) is determined to be 2.4 at 298 K. On the basis of kinetic data, the mechanism of isomerization is identified as an intramolecular process, including the rotation of the confused pyrrole in pyridine/chloroform and DMF/chloroform mixed solvent systems, and as a pyridine-mediated process in pyridine alone.

NH Tautomerism of a Quadruply Fused Porphyrin: Rigid Fused Structure Delays the Proton Transfer

We report herein NH tautomerism of a freebase derivative of a quadruply fused porphyrin (H₂QFP-Mes, 3), which has one mesityl group at one of the β-positions of the nonfused pyrroles to lower the structural symmetry, allowing us to observe the NH tautomerism with ¹H NMR spectroscopy. Compound 3 was revealed to have the two inner NH protons on the two nonfused pyrroles, and the NH tautomerism of 3 was evidenced by variable-temperature (VT) ¹H NMR experiments in various deuterated solvents. The VT-NMR studies revealed that the activation barrier for the NH tautomerism of 3 was larger than that of tetraphenylporphyrin. The positive activation entropy (ΔS^‡ = 89 J mol^-1 K^-1), determined for the NH tautomerism, can be explained by dissociation of the π-π stacked dimer structure of 3 in the ground state, as evidenced by the crystal structure and NMR measurements. On the basis of the kinetic studies and density functional theory calculations, the stability of intermediates in the NH tautomerism of 3 and the transition states have been discussed in detail.

Atropisomerism and conformational aspects of meso-tetraarylporphyrins and related compounds

This review provides a comprehensive description of the atropisomerism of meso-di- and tetraarylporphyrins with substituents in ortho-positions of the aryl ring, as well as in corroles and in conveniently substituted phthalocyanines. Different methods of study were examined: X-ray crystallography, NMR spectroscopy (both static and dynamic aspects), classical kinetics, HPLC and theoretical calculations. Then the four atropisomers, the tautomerism of the inner protons, the 'picket fence' concept, conformationally restricted meso-tetraarylporphyrins and the influence of the metal on the conformation were discussed based on 250 references.

Status of theoretical modeling of tautomerization in free-base porphyrin

We provide a review on the status of theoretical modeling of tautomerization in free-base porphyrin. We focus our discussion on several aspects, namely: (1) potential surfaces for both the stepwise and concerted mechanisms calculated at different levels of theory, (2) solvent effects and (3) kinetics. The importance of quantum mechanical tunneling in this double hydrogen atoms transfer process is analyzed.

An NMR thermometer for cryogenic magic-angle spinning NMR: the spin-lattice relaxation of (127)I in cesium iodide

The accurate temperature measurement of solid samples under magic-angle spinning (MAS) is difficult in the cryogenic regime. It has been demonstrated by Thurber et al. (J. Magn. Reson., 196 (2009) 84-87) [10] that the temperature dependent spin-lattice relaxation time constant of (79)Br in KBr powder can be useful for measuring sample temperature under MAS over a wide temperature range (20-296 K). However the value of T(1) exceeds 3 min at temperatures below 20K, which is inconveniently long. In this communication, we show that the spin-lattice relaxation time constant of (127)I in CsI powder can be used to accurately measure sample temperature under MAS within a reasonable experimental time down to 10 K.

Measurement of sample temperatures under magic-angle spinning from the chemical shift and spin-lattice relaxation rate of 79Br in KBr powder

Accurate determination of sample temperatures in solid state nuclear magnetic resonance (NMR) with magic-angle spinning (MAS) can be problematic, particularly because frictional heating and heating by radio-frequency irradiation can make the internal sample temperature significantly different from the temperature outside the MAS rotor. This paper demonstrates the use of (79)Br chemical shifts and spin-lattice relaxation rates in KBr powder as temperature-dependent parameters for the determination of internal sample temperatures. Advantages of this method include high signal-to-noise, proximity of the (79)Br NMR frequency to that of (13)C, applicability from 20 K to 320 K or higher, and simultaneity with adjustment of the MAS axis direction. We show that spin-lattice relaxation in KBr is driven by a quadrupolar mechanism. We demonstrate a simple approach to including KBr powder in hydrated samples, such as biological membrane samples, hydrated amyloid fibrils, and hydrated microcrystalline proteins, that allows direct assessment of the effects of frictional and radio-frequency heating under experimentally relevant conditions.

NMR studies of ultrafast intramolecular proton tautomerism in crystalline and amorphous n,n'-diphenyl-6-aminofulvene-1-aldimine: solid-state, kinetic isotope, and tunneling effects

Using solid-state NMR spectroscopy, we have detected and characterized ultrafast intramolecular proton tautomerism in the N-H-N hydrogen bonds of solid N, N'-diphenyl-6-aminofulvene-1-aldimine ( I) on the microsecond-to-picosecond time scale. (15)N cross-polarization magic-angle-spinning NMR experiments using (1)H decoupling performed on polycrystalline I- (15)N 2 and the related compound N-phenyl- N'-(1,3,4-triazole)-6-aminofulvene-1-aldimine ( II) provided information about the thermodynamics of the tautomeric processes. We found that II forms only a single tautomer but that the gas-phase degeneracy of the two tautomers of I is lifted by solid-state interactions. Rate constants, including H/D kinetic isotope effects (KIEs), on the microsecond-to-picosecond time scale were obtained by measuring and analyzing the longitudinal (15)N and (2)H relaxation times of I- (15)N 2, I- (15)N 2- d 10, and I- (15)N 2- d 1 over a wide temperature range. In addition to the microcrystalline modification, a novel amorphous modification of I was found and studied. In this modification, proton transfer is much faster than in the crystalline form. For both modifications, we observed large H/D KIEs that were temperature-dependent at high temperatures and temperature-independent at low temperatures. These findings are interpreted in terms of a simple quasiclassical tunneling model proposed by Bell and modified by Limbach. We obtained evidence that a reorganization energy is necessary in order to compress the N-H-N hydrogen bond and achieve a molecular configuration in which the barrier for H transfer is reduced and tunneling or an over-barrier reaction can occur.

Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion

Photointerconversion between the red light-absorbing (Pr) form and the far-red light-absorbing (Pfr) form is the central feature that allows members of the phytochrome (Phy) superfamily to act as reversible switches in light perception. Whereas the chromophore structure and surrounding binding pocket of Pr have been described, those for Pfr have remained enigmatic for various technical reasons. Here we describe a novel pair of Phys from two thermophilic cyanobacteria, Synechococcus sp. OS-A and OS-B', that overcome several of these limitations. Like other cyanobacterial Phys, SyA-Cph1 and SyB-Cph1 covalently bind the bilin phycocyanobilin via their cGMP phosphodiesterase/adenyl cyclase/FhlA (GAF) domains and then assume the photointerconvertible Pr and Pfr states with absorption maxima at 630 and 704 nm, respectively. However, they are naturally missing the N-terminal Per/Arndt/Sim domain common to others in the Phy superfamily. Importantly, truncations containing only the GAF domain are monomeric, photochromic, and remarkably thermostable. Resonance Raman and NMR spectroscopy show that all four pyrrole ring nitrogens of phycocyanobilin are protonated both as Pr and following red light irradiation, indicating that the GAF domain by itself can complete the Pr to Pfr photocycle. (1)H-(15)N two-dimensional NMR spectra of isotopically labeled preparations of the SyB-Cph1 GAF domain revealed that a number of amino acids change their environment during photoconversion of Pr to Pfr, which can be reversed by subsequent photoconversion back to Pr. Through three-dimensional NMR spectroscopy before and after light photoexcitation, it should now be possible to define the movements of the chromophore and binding pocket during photoconversion. We also generated a series of strongly red fluorescent derivatives of SyB-Cph1, which based on their small size and thermostability may be useful as cell biological reporters.

15N MAS NMR studies of cph1 phytochrome: Chromophore dynamics and intramolecular signal transduction

Solid-state nuclear magnetic resonance (NMR) is applied for the first time to the photoreceptor phytochrome. The two stable states, Pr and Pfr, of the 59-kDa N-terminal module of the cyanobacterial phytochrome Cph1 from Synechocystis sp. PCC 6803 containing a uniformly 15N-labeled phycocyanobilin cofactor are explored by 15N cross-polarization (CP) magic-angle spinning (MAS) NMR. As recently shown by 15N solution-state NMR using chemical shifts [Strauss, H. M.; Hughes, J.; Schmieder, P. Biochemistry 2005, 44, 8244], all four nitrogens are protonated in both states. CP/MAS NMR provides two additional independent lines of evidence for the protonation of the nitrogens. Apparent loss of mobility during photoactivation, indicated by the decrease of line width, demonstrates strong tension of the entire chromophore in the Pfr state, which is in clear contrast to a more relaxed Pr state. The outer rings (A and D) of the chromophore are significantly affected by the phototransformation, as indicated by both change of chemical shift and line width. On the other hand, on the inner rings (B and C) only minor changes of chemical shifts are detected, providing evidence for a conserved environment during phototransformation. In a mechanical model, the phototransformation is understood in terms of rotations between the A-B and C-D methine bridges, allowing for intramolecular signal transduction to the protein surface by a unit composed of the central rings B and C and its tightly linked protein surroundings during the highly energetic Pfr state.

NMR studies of double proton transfer in hydrogen bonded cyclic N,N'-diarylformamidine dimers: conformational control, kinetic HH/HD/DD isotope effects and tunneling

Using dynamic NMR spectroscopy, the kinetics of the degenerate double proton transfer in cyclic dimers of polycrystalline (15)N,(15)N'-di-(4-bromophenyl)-formamidine (DBrFA) have been studied including the kinetic HH/HD/DD isotope effects in a wide temperature range. This transfer is controlled by intermolecular interactions, which in turn are controlled by the molecular conformation and hence the molecular structure. At low temperatures, rate constants were determined by line shape analysis of (15)N NMR spectra obtained using cross-polarization (CP) and magic angle spinning (MAS). At higher temperatures, in the microsecond time scale, rate constants and kinetic isotope effects were obtained by a combination of longitudinal (15)N and (2)H relaxation measurements. (15)N CPMAS line shape analysis was also employed to study the non-degenerate double proton transfer of polycrystalline (15)N,(15)N'-diphenyl-formamidine (DPFA). The kinetic results are in excellent agreement with the kinetics of DPFA and (15)N,(15)N'-di-(4-fluorophenyl)-formamidine (DFFA) studied previously for solutions in tetrahydrofuran. Two large HH/HD and HD/DD isotope effects are observed in the whole temperature range which indicates a concerted double proton transfer mechanism in the domain of the reaction energy surface. The Arrhenius curves are non-linear indicating a tunneling mechanism. Arrhenius curve simulations were performed using the Bell-Limbach tunneling model. The role of the phenyl group conformation and hydrogen bond compression on the barrier of the proton transfer is discussed.

Dynamics of 9-hydroxyphenalenone studied by one-dimensional solid-state spin exchange NMR

We present a new NMR method to clarify the dynamics of proton tautomerism in solid 9-hydroxyphenalenone. Two 13C resonance lines influenced by the proton tautomerism have a chemical-shift difference between them, which increases with decreasing temperature. To depict the precise potential curve of the proton tautomerism, the chemical-shift difference when the proton tautomerism is completely frozen is necessary. For solid 9-hydroxyphenalenone and its derivatives, the freezing temperatures are often under -100 degrees C. When the freezing temperatures are below the temperature range in which standard magic angle spinning NMR probes can perform a sample spinning, it is very difficult to obtain the shift difference. The NMR experiments based on this new method are performed at a temperature significantly higher than -100 degrees C at which the proton tautomerism is still active. The new method yields the 13C spin relaxation rates, the rates for the proton tautomerism, and the populations of the two tautomers. Using the populations and the 13C chemical-shift difference at that temperature, we determined the chemical-shift difference at the freezing temperature. We also obtained several parameters characterizing the potential profile for the proton dynamics in solid 9-hydroxyphenalenone.

Resonance Raman study of free-base tetraphenylporphine and its dication

Resonance Raman spectra of free-base tetraphenylporphine and its dication obtained with 441.6, 476.5, 488.0 and 514.5 nm excitation lines in the frequency region 100-1625 cm(-1) are reported. Some bands due to in-plane and out-of-plane vibrational modes, which are symmetry forbidden under ideal D(2h), are also seen in the Raman spectra of these molecules. These bands arise due to dynamic and/or static coupling of out-of-plane modes with the allowed in-plane modes. Dynamic coupling may be facilitated by the proton tunneling, while static coupling is due to out-of-plane distortion in the geometrical structure of the molecule. Shift in the positions for certain bands in the Raman spectra of dication are interpreted on the basis of electronic changes due to sharing of electrons of the B(1u) orbital by the two added protons.

Inelastic Neutron Scattering Spectra of Free Base and Zinc Porphines: A Comparison with DFT-Based Vibrational Analysis

Inelastic neutron scattering (INS) spectra of free base (FBP) and zinc (ZnP) porphines are presented and compared with the results of density functional theory (DFT) calculations using the B3LYP functional with 6-31G(d) or 6-311G(d,p) basis sets. To obtain quantitative agreement between experiment and theory, two different scaling techniques have been applied: a scaled quantum mechanical (DFT-SQM) force field was developed for B3LYP/6-31G(d) calculations and the uniform frequency scaling technique (DFT-UFS) was applied to B3LYP/6-311G(d,p) results. The DFT-SQM calculations have been previously compared with IR and Raman spectra with good agreement, which allows for a nearly complete vibrational assignment. The results of the present study extend previous vibrational analysis to a higher level of reliability and complexity. The previous results are augmented by the comparison of calculated and observed INS intensities and the comparison of calculated modes with those observed in INS spectra but previously unobserved in optical spectra. Excellent agreement is acquired between the INS spectra and the results of both calculations, permitting a more detailed and reliable description of the vibrational properties of porphyrins.

Mechanochromism of Piroxicam Accompanied by Intermolecular Proton Transfer Probed by Spectroscopic Methods and Solid-Phase Changes

Structural and solid-state changes of piroxicam in its crystalline form under mechanical stress were investigated using cryogenic grinding, powder X-ray diffractometry, diffuse-reflectance solid-state ultraviolet-visible spectroscopy, variable-temperature solid-state (13)C nuclear magnetic resonance spectroscopy, and solid-state diffuse-reflectance infrared Fourier transform spectroscopy. Crystalline piroxicam anhydrate exists as colorless single crystals irrespective of the polymorphic form and contains neutral piroxicam molecules. Under mechanical stress, these crystals become yellow amorphous piroxicam, which has a strong propensity to recrystallize to a colorless crystalline phase. The yellow color of amorphous piroxicam is attributed to charged piroxicam molecules. Variable-temperature solid-state (13)C NMR spectroscopy indicates that most of the amorphous piroxicam consists of neutral piroxicam molecules; the charged species comprise only about 8% of the amorphous phase. This ability to quantify the fractions of charged and neutral molecules of piroxicam in the amorphous phase highlights the unique capability of solid-state NMR to quantify mixtures in the absence of standards. Other compounds of piroxicam, which are yellow, are known to contain zwitterionic piroxicam molecules. The present work describes a system in which proton transfer accompanies both solid-state disorder and a change in color induced by mechanical stress, a phenomenon which may be termed mechanochromism of piroxicam.

Conformational Studies by Dynamic NMR. 99.1 Experimental and Computed Determination of Rotation Barriers in the Crystalline State: The Case of Naphthylphenylsulfoxide

The (13)C NMR CP-MAS spectrum of 2-naphthylphenylsulfoxide in the solid state displays line broadening effects due to the restricted rotation about the Ph-S bond. Line shape simulation of the temperature-dependent traces allowed the corresponding barrier to be determined in the solids (14.7 kcal mol(-1)). By making use of the information obtained from single-crystal X-ray diffraction, this barrier could be satisfactorily reproduced by theoretical calculations (14.5 kcal mol(-1)) that take into account the correlated phenyl motion involving a large set of molecules in the crystalline state

Synthesis of a Macrobicycle Incorporating the Tris(pyrazolyl)methane Ligand

Steric crowding of the 3-position of tris(pyrazolyl)borate and -methane ligands has produced tetrahedral metal complexes with controlled reactivity. As an alternative, we propose to incorporate the tris(pyrazolyl)methane chelate in a macrobicyclic structure in order to create a cavity with well-defined dimensions and shape. Acid-catalyzed equilibration of excess of the new pyrazole 3-(1H-pyrazol-3-yl)benzenemethanethiol acetate with HC(3,5-Me(2)pz)(3) followed by hydrolysis affords a functionalized tris(pyrazolyl)methane, which reacts with 1,3,5-tris(bromomethyl)benzene in K(2)CO(3)/DMF to give the title compound. [structure: see text]

Interaction of Cd and Zn with biologically important ligands characterized using solid-state NMR and ab initio calculations

For the first time, coordination geometry and structure of metal binding sites in biologically relevant systems are studied using chemical shift parameters obtained from solid-state NMR experiments and quantum chemical calculations. It is also the first extensive report looking at metal-imidazole interaction in the solid state. The principal values of the (113)Cd chemical shift anisotropy (CSA) tensor in crystalline cadmium histidinate and two different cadmium formates (hydrate and anhydrate) were experimentally measured to understand the effect of coordination number and geometry on (113)Cd CSA. Further, (13)C and (15)N chemical shifts have also been experimentally determined to examine the influence of cadmium on the chemical shifts of (15)N and (13)C nuclei present near the metal site in the cadmium-histidine complex. These values were then compared with the chemical shift values obtained from the isostructural bis(histidinato)zinc(II) complex as well as from the unbound histidine. The results show that the isotropic chemical shift values of the carboxyl carbons shift downfield and those of amino and imidazolic nitrogens shift upfield in the metal (Zn,Cd)-histidine complexes relative to the values of the unbound histidine sample. These shifts are in correspondence with the anticipated values based on the crystal structure. Ab initio calculations on the cadmium histidinate molecule show good agreement with the (113)Cd CSA tensors determined from solid-state NMR experiments on powder samples. (15)N chemical shifts for other model complexes, namely, zinc glycinate and zinc hexaimidazole chloride, are also considered to comprehend the effect of zinc binding on (15)N chemical shifts.

Synthesis and Characterization of Copper(I) Complexes with a Fairly Bulky Tris(pyrazolyl)hydroborate Ligand. Probing the Flexibility of the Metal-Containing Pocket Formed by the Ligand

Four copper(I) tris(pyrazolyl)hydroborate complexes are reported with the fairly bulky tris[3-(p-tert-butylphenyl)-5-methylpyrazol-1-yl]hydroborate ligand (Tp()t(Bu-)(Ph,Me)). Tp()t(Bu-)(Ph,Me)Cu(CH(3)CN) (1) was synthesized from CuCl and Tp()t(Bu-)(Ph,Me)Li(CH(3)CN). The acetonitrile ligand in 1 was easily replaced by CO, PPh(3), and P(t)()Bu(3), forming Tp()t(Bu-)(Ph,Me)Cu(CO) (2), Tp()t(Bu-)(Ph,Me)Cu(PPh(3)) (3), and Tp()t(Bu-)(Ph,Me)Cu(P(t)()Bu(3)) (4), respectively. Complexes 1-4 have been crystallographically characterized. 1.4CH(3)CN, 173 K: C(52)H(67)BCuN(11), triclinic, P&onemacr;, a = 13.4201(10) Å, b= 15.132(2) Å, c = 15.2125(13) Å, alpha = 60.743(6) degrees, beta = 73.211(4) degrees, gamma = 74.839(5) degrees, Z = 2, R1 = 6.81% (wR2 = 18.91%). 2, 296 K: C(43)H(52)BCuN(6)O, monoclinic, C2/c, a = 25.592(4) Å, b = 12.434(2) Å, c = 28.044(3) Å, beta = 104.073(9) degrees, Z = 8, R1 = 7.47% (wR2 = 22.08%). 3.CH(2)Cl(2), 173 K: C(61)H(69)BCl(2)CuN(6)P, triclinic, P&onemacr;, a= 12.5080(13) Å, b = 15.159(3) Å, c = 17.151(2) Å, alpha = 64.271(10) degrees, beta = 79.073(7) degrees, gamma = 86.572(8) degrees, Z = 2, R1 = 5.13% (wR2 = 13.28%). 4.0.5 hexane, 298 K: C(57)H(86)BCuN(6)P, triclinic, P&onemacr;, a = 13.337(2) Å, b = 13.435(2) Å, c = 17.386(2) Å, alpha = 88.371(7) degrees, beta = 71.863(8) degrees, gamma = 80.223(9) degrees, Z = 2, R1 = 6.96% (wR2 = 18.62%). The Tp()t(Bu-)(Ph,Me) ligands in 1, 2, and 3 bind in a tridentate fashion; the CH(3)CN and CO ligands fit comfortably within the pocket formed by the tert-butylphenyl substituents and the PPh(3) ligand interleaves between the pyrazole arms. The flexibility of the pocket was probed by calculating the area of the triangle created by connecting the midpoints of the 3-phenyl groups; this parameter increases by 15% for 3 (the largest) over 1 (the smallest). Thus, the pocket exhibits some flexibility, found to be due to both steric and electronic factors. Complex 4 features a bidentate Tp()t(Bu-)(Ph,Me) ligand as the P(t)()Bu(3) apparently exceeds the pocket's flexibility.