Cyclic peptides. 0. Synthesis and a structural study of an ion-binding cyclic peptide analog of valinomycin, cyclo(L-Ala-Gly-D-Phe-L-Pro)3

Incorporation of β-amino acids into ascidiacyclamides: Effects on conformation, cytotoxicity and interaction with copper (II) ion

Seven ascidiacyclamide [cyclo(-Ile-oxazoline-d-Val-thiazole-)₂ ] (ASC) analogues incorporating the β-amino acids βIle, βoxazoline, and/or d-βVal were synthesized. We then investigated the effects of the position and number of incorporated β-amino acids on the structure, cytotoxicity, and copper binding by these seven analogues. The structural analyses revealed that both βIle and d-βVal favor a gauche-type θ torsion angles, while βoxazoline favors a trans-type θ torsion angle. Expansion of the macrocycle by incorporation of βIle or d-βVal readily induced molecular folding. On the other hand, the incorporation of two βoxazoline residues strongly extended the peptide conformation, and the incorporation of one was sufficient for the moderate restriction important for conformational equilibrium and cytotoxicity. Despite expansion of the macrocycles, the structure-cytotoxicity relationships were largely maintained. In studies of complexation of the analogues with Cu (II) ion, the position and number of incorporated β-amino acids had a large impact on the structure of the metal complex and may contribute to its stabilization.

Ferrocenyl-Bearing Cyclopseudopeptides as Redox-Switchable Cation Receptors

A family of ferrocenyl-bearing cyclopseudopeptides (1-10) designed for redox-switchable receptors of cations was synthesized. Circular dichroism (CD) and cyclic valtammetry (CV) studies of cation binding properties in both the reduced (K1) and oxidized (K2) forms revealed that the binding preference is mainly governed by the charges and radius of the guest cation as well as by the suitability of the host to accommodate the guest. Particularly worth mentioning is the fact that some synthesized cyclopseudopeptides showed high binding affinity and selectivity toward alkaline-earth ions. For example, the K1 of compound 2 binding with Ca2+ is 4.37 x 10(6) mol(-1) x L and its Ca2+/K+ selectivity is 3.1 x 10(5):1, both values are much greater than those of an excellent natural ionophore, valinomycin (1 x 10(5) mol(-1) x L and 0.33:1, respectively). The linear relationship between the shifts of half-wave potentials (deltaE(1/2)) and the radius/charge [r/(+)] ratios suggests that the sensitivity of electrochemical responses to cation complexation be dominated by repulsion factors between the redox center and the incoming cation guest.

Conformational analysis of cyclolinopeptide A, a cyclic nonapeptide: nuclear Overhauser effect and energy minimization studies

The conformation of cyclolinopeptide A [cyclo(Pro-Pro-Phe-Phe-Leu-Ile-Ile-Leu-Val)], a naturally occurring cyclic nonapeptide has been investigated in dimethylsulfoxide solution by 270 MHz 1H-nmr. A complete assignment of all C alpha H and NH resonances has been accomplished using two-dimensional correlated spectroscopy and nuclear Overhauser effects (NOEs). Analysis of interresidue NOEs and JHNC alpha H values permit construction of a molecular model for the cyclic peptide backbone. The crude model derived from nmr has been used as a starting point for energy minimization, which yields a refined structure largely compatible with nmr observations. The major features of the conformation of cyclolinopeptide A are a Type VI beta-turn centered at Pro(1)-Pro(2), with a cis peptide bond between these residues and a gamma-turn (C7 structure) centered at Ile(6). Two intramolecular hydrogen bonds Val(9) CO--Phe(3)NH (4----1) and Leu(5) CO--Ile(7)NH (3----1) are observed in the low-energy conformation. The limited solvent accessibility observed for the Val(9) and Leu(5) NH groups in the nmr studies are rationalized in terms of steric shielding.