1
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Ukhanev SA, Fedorov SV, Rusakov YY, Rusakova IL, Krivdin LB. Computational protocols for the 19F NMR parameters. Part 2: Fluorobenzenes. J Fluor Chem 2023. [DOI: 10.1016/j.jfluchem.2023.110093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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2
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Malkina OL, Hierso JC, Malkin VG. Distinguishing "Through-Space" from "Through-Bonds" Contribution in Indirect Nuclear Spin-Spin Coupling: General Approaches Applied to Complex JPP and JPSe Scalar Couplings. J Am Chem Soc 2022; 144:10768-10784. [PMID: 35687121 DOI: 10.1021/jacs.2c01637] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We present herein two complementary theoretical approaches for analyzing the transmission pathways of indirect nuclear spin-spin couplings in high-resolution nuclear magnetic resonance. This phenomenon is notably conceptually poorly understood in complex experimental situations in which both nonbonded ["through-space" (TS)] and more "classical" bonding ("through-bond") spin-spin coupling pathways are potentially involved. The computational approaches we propose allow the visualization and discussion of individual transmission pathways and estimation of their relative weight from numerical contributions to the spin-spin coupling constant J-value. The first approach is based on the analysis of contributions limited to occupied molecular orbitals [focused on occupied molecular orbitals (FOMO)]. The second approach encompasses the consideration of both occupied and vacant orbitals [global molecular orbital contributions (GMOC)], and, besides the contributions from individual pathways, also considers their cross contributions. Both approaches are applicable to large systems with complex interactions of nuclear magnetic moments. Herein, we have first applied the FOMO and GMOC computational approaches to simple diphosphine models and then extended the analysis to JPP and JPSe experimentally measured in a constrained selenated (diphosphino)naphthalene compound. The new computational tools contributed evidence for the importance of the single lone pair not only from phosphorus but also from selenium in TS spin-spin transmission. It evidenced and modeled for the first time the existence of spin-spin transmission pathways mixing classical covalent bonding parts with a lone pair overlap of proximate heteroatoms (P and Se).
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Affiliation(s)
- Olga L Malkina
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, Bratislava 84 536, Slovakia
| | - Jean-Cyrille Hierso
- Institut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB, UMR CNRS 6302), Université Bourgogne-Franche-Comté (UBFC), 9 Avenue Alain Savary, Dijon, 21078, France.,Institut Universitaire de France (IUF), 103 Bd. Saint Michel, 75005 Paris Cedex 5, France
| | - Vladimir G Malkin
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, Bratislava 84 536, Slovakia
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3
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Nguyen TA, Penouilh MJ, Cattey H, Pirio N, Fleurat-Lessard P, Hierso JC, Roger J. Unsymmetrically Substituted Bis(phosphino)Ferrocenes Triggering Through-Space 31(P, P′)-Nuclear Spin Couplings and Encapsulating Coinage Metal Cations. Organometallics 2021. [DOI: 10.1021/acs.organomet.1c00465] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Tuan-Anh Nguyen
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Marie-José Penouilh
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Hélène Cattey
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Nadine Pirio
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Paul Fleurat-Lessard
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Jean-Cyrille Hierso
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
| | - Julien Roger
- Institut de Chimie Moléculaire de l’Université de Bourgogne (ICMUB - UMR CNRS 6302), Université Bourgogne−Franche-Comté (UBFC), 9 avenue Alain Savary, 21078 Dijon Cedex, France
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4
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5
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Castro KP, Bukovsky EV, Kuvychko IV, DeWeerd NJ, Chen Y, Deng SHM, Wang X, Popov AA, Strauss SH, Boltalina OV. PAH/PAH(CF 3 ) n Donor/Acceptor Charge-Transfer Complexes in Solution and in Solid-State Co-Crystals. Chemistry 2019; 25:13547-13565. [PMID: 31381207 PMCID: PMC6916568 DOI: 10.1002/chem.201902712] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Indexed: 11/16/2022]
Abstract
A solution, solid-state, and computational study is reported of polycyclic aromatic hydrocarbon PAH/PAH(CF3 )n donor/acceptor (D/A) charge-transfer complexes that involve six PAH(CF3 )n acceptors with known gas-phase electron affinities that range from 2.11(2) to 2.805(15) eV and four PAH donors, including seven CT co-crystal X-ray structures that exhibit hexagonal arrays of mixed π-stacks with 1/1, 1/2, or 2/1 D/A stoichiometries (PAH=anthracene, azulene, coronene, perylene, pyrene, triphenylene; n=5, 6). These are the first D/A CT complexes with PAH(CF3 )n acceptors to be studied in detail. The nine D/A combinations were chosen to allow several structural and electronic comparisons to be made, providing new insights about controlling D/A interactions and the structures of CT co-crystals. The comparisons include, among others, CT complexes of the same PAH(CF3 )n acceptor with four PAH donors and CT complexes of the same donor with four PAH(CF3 )n acceptors. All nine CT complexes exhibit charge-transfer bands in solution with λmax between 467 and 600 nm. A plot of E(λmax ) versus [IE(donor)-EA(acceptor)] for the nine CT complexes studied is linear with a slope of 0.72±0.03 eV eV-1 . This plot is the first of its kind for CT complexes with structurally related donors and acceptors for which precise experimental gas-phase IEs and EAs are known. It demonstrates that conclusions based on the common assumption that the slope of a CT E(λmax ) versus [IE-EA] plot is unity may be incorrect in at least some cases and should be reconsidered.
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Affiliation(s)
- Karlee P. Castro
- Department of ChemistryColorado State UniversityFort CollinsCO80523USA
| | - Eric V. Bukovsky
- Department of ChemistryColorado State UniversityFort CollinsCO80523USA
| | - Igor V. Kuvychko
- Department of ChemistryColorado State UniversityFort CollinsCO80523USA
| | | | - Yu‐Sheng Chen
- ChemMatCARSUniversity of Chicago, Advanced Photon SourceArgonneIL 60439USA
| | - Shihu H. M. Deng
- Physical Sciences DivisionPacific Northwest National Laboratory, MS K8 88P.O. Box 999RichlandWashington99352USA
| | - Xue‐Bin Wang
- Physical Sciences DivisionPacific Northwest National Laboratory, MS K8 88P.O. Box 999RichlandWashington99352USA
| | - Alexey A. Popov
- Leibniz Institute for Solid State and Materials ResearchDresden01069Germany
| | - Steven H. Strauss
- Department of ChemistryColorado State UniversityFort CollinsCO80523USA
| | - Olga V. Boltalina
- Department of ChemistryColorado State UniversityFort CollinsCO80523USA
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6
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Mokrai R, Barrett J, Apperley DC, Batsanov AS, Benkő Z, Heift D. Weak Pnictogen Bond with Bismuth: Experimental Evidence Based on Bi-P Through-Space Coupling. Chemistry 2019; 25:4017-4024. [PMID: 30680824 PMCID: PMC6593703 DOI: 10.1002/chem.201900266] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Indexed: 12/21/2022]
Abstract
To study pnictogen bonding involving bismuth, flexible accordion-like molecular complexes of the composition [P(C6 H4 -o-CH2 SCH3 )3 BiX3 ], (X=Cl, Br, I) have been synthesised and characterised. The strength of the weak and mainly electrostatic interaction between the Bi and P centres strongly depends on the character of the halogen substituent on bismuth, which is confirmed by single-crystal X-ray diffraction analyses, DFT and ab initio computations. Significantly, 209 Bi-31 P through-space coupling (J=2560 Hz) is observed in solid-state 31 P NMR spectra, which is so far unprecedented in the literature, delivering direct information on the magnitude of this pnictogen interaction.
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Affiliation(s)
- Réka Mokrai
- Budapest University of Technology and EconomicsH-1111BudapestHungary
| | - Jamie Barrett
- Department of ChemistryDurham UniversityDH1 3LEDurhamUK
| | | | | | - Zoltán Benkő
- Budapest University of Technology and EconomicsH-1111BudapestHungary
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7
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Jaszuński M, Świder P, Sauer SPA. Through-space spin–spin coupling constants involving fluorine: benchmarking DFT functionals. Mol Phys 2019. [DOI: 10.1080/00268976.2018.1563726] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Michał Jaszuński
- Institute of Organic Chemistry, Polish Academy of Sciences, Warszawa, Poland
| | - Paweł Świder
- Institute of Organic Chemistry, Polish Academy of Sciences, Warszawa, Poland
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8
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Krivdin LB. Theoretical calculations of carbon-hydrogen spin-spin coupling constants. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 108:17-73. [PMID: 30538048 DOI: 10.1016/j.pnmrs.2018.10.002] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 10/09/2018] [Accepted: 10/11/2018] [Indexed: 06/09/2023]
Abstract
Structural applications of theoretical calculations of carbon-hydrogen spin-spin coupling constants are reviewed covering papers published mainly during the last 10-15 years with a special emphasis on the most notable studies of hybridization, substitution and stereoelectronic effects together with the investigation of hydrogen bonding and intermolecular interactions. The wide scope of different applications of calculated carbon-hydrogen couplings in the structural elucidation of particular classes of organic and bioorganic molecules is reviewed, concentrating mainly on saturated, unsaturated, aromatic and heteroaromatic compounds and their functional derivatives, as well as on natural compounds and carbohydrates. The review is dedicated to Professor Emeritus Michael Barfield in view of his invaluable pioneering contribution to this field.
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Affiliation(s)
- Leonid B Krivdin
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia.
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9
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Zhang C, Luo Q, Cheng S, Bu Y. Unusual Indirect Nuclear Spin-Spin Exchange Coupling through Solvated Electron. J Phys Chem Lett 2018; 9:689-695. [PMID: 29369635 DOI: 10.1021/acs.jpclett.7b03249] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Solvated electrons have been found to exist in various media which also exhibit more intriguing properties such as superconductivity, nonlinear optical response, and so on. However, how they affect the nuclear spin properties has not been proven. In this work, we present the first detailed study on solvated-electron-triggered indirect nuclear spin-spin J-coupling using density functional theory calculations. Taking 19F as a probe, we verify the presence of unusual J couplings between two distant F atoms in HF-containing anionic clusters. These couplings occur "through solvated electron", rather than through conventional covalent bonds or space. Solvated electron can serve as an additional channel to efficiently realize long-range J-coupling between far separated nuclei because of its dispersivity and Rydberg character. The coupling magnitude strongly depends on the unique distribution of solvated electron and its second-order interaction with solvating HF units. This work provides novel insights into the mediating roles of electrons, possibly opening up potential applications based on weakly bound electrons.
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Affiliation(s)
- Changzhe Zhang
- School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, People's Republic of China
| | - Qi Luo
- School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, People's Republic of China
| | - Shibo Cheng
- School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, People's Republic of China
| | - Yuxiang Bu
- School of Chemistry and Chemical Engineering, Shandong University , Jinan, 250100, People's Republic of China
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10
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Lande DN, Gejji SP. Cooperative Hydrogen Bonding, Molecular Electrostatic Potentials, and Spectral Characteristics of Partial Thia-Substituted Calix[4]arene Macrocycles. J Phys Chem A 2016; 120:7385-97. [DOI: 10.1021/acs.jpca.6b07568] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dipali N. Lande
- Department of Chemistry, Savitribai Phule Pune University, 411 007 Pune, India
| | - Shridhar P. Gejji
- Department of Chemistry, Savitribai Phule Pune University, 411 007 Pune, India
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11
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Arras J, Eichele K, Maryasin B, Schubert H, Ochsenfeld C, Wesemann L. Intermolecular 119Sn,31P Through-Space Spin–Spin Coupling in a Solid Bivalent Tin Phosphido Complex. Inorg Chem 2016; 55:4669-75. [DOI: 10.1021/acs.inorgchem.6b00573] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Janet Arras
- Institut
für Anorganische Chemie, Universität Tübingen, Auf
der Morgenstelle 18, 72076 Tübingen, Germany
- Theoretische
Chemie, University of Munich (LMU Munich), Butenandtstraße 7, 81377 Munich, Germany
| | - Klaus Eichele
- Institut
für Anorganische Chemie, Universität Tübingen, Auf
der Morgenstelle 18, 72076 Tübingen, Germany
| | - Boris Maryasin
- Theoretische
Chemie, University of Munich (LMU Munich), Butenandtstraße 7, 81377 Munich, Germany
| | - Hartmut Schubert
- Institut
für Anorganische Chemie, Universität Tübingen, Auf
der Morgenstelle 18, 72076 Tübingen, Germany
| | - Christian Ochsenfeld
- Theoretische
Chemie, University of Munich (LMU Munich), Butenandtstraße 7, 81377 Munich, Germany
| | - Lars Wesemann
- Institut
für Anorganische Chemie, Universität Tübingen, Auf
der Morgenstelle 18, 72076 Tübingen, Germany
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12
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Rastogi SK, Rogers RA, Shi J, Brown CT, Salinas C, Martin KM, Armitage J, Dorsey C, Chun G, Rinaldi P, Brittain WJ. Through-space (19)F-(19)F spin-spin coupling in ortho-fluoro Z-azobenzene. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2016; 54:126-131. [PMID: 26332615 DOI: 10.1002/mrc.4327] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Revised: 07/22/2015] [Accepted: 07/30/2015] [Indexed: 06/05/2023]
Abstract
We report through-space (TS) (19)F-(19)F coupling for ortho-fluoro-substituted Z-azobenzenes. The magnitude of the TS-coupling constant ((TS) JFF ) ranged from 2.2-5.9 Hz. Using empirical formulas reported in the literature, these coupling constants correspond to non-bonded F-F distances (dFF) of 3.0-3.5 Å. These non-bonded distances are significantly smaller than those determined by X-ray crystallography or density functional theory, which argues that simple models of (19)F-(19)F TS spin-spin coupling solely based dFF are not applicable. (1)H, (13)C and (19)F data are reported for both the E and Z isomers of ten fluorinated azobenzenes. Density functional theory [B3YLP/6-311++G(d,p)] was used to calculate (19) F chemical shifts, and the calculated values deviated 0.3-10.0 ppm compared with experimental values.
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Affiliation(s)
- Shiva K Rastogi
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Robert A Rogers
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Justin Shi
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Christopher T Brown
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Cindy Salinas
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Katherine M Martin
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Jacob Armitage
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Christopher Dorsey
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
| | - Gao Chun
- Department of Chemistry, The University of Akron, Akron, OH, 44325, United States
| | - Peter Rinaldi
- Department of Chemistry, The University of Akron, Akron, OH, 44325, United States
| | - William J Brittain
- Department of Chemistry and Biochemistry, Texas State University, 601 University Drive, San Marcos, TX, 78666, United States
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13
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Deng W, Cheeseman JR, Frisch MJ. Calculation of Nuclear Spin-Spin Coupling Constants of Molecules with First and Second Row Atoms in Study of Basis Set Dependence. J Chem Theory Comput 2015; 2:1028-37. [PMID: 26633062 DOI: 10.1021/ct600110u] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This paper proposes a systematic way to modify standard basis sets for use in NMR spin-spin coupling calculations, which allows the high sensitivity of this property to the basis set to be handled in a manner which remains computationally feasible. The new basis set series is derived by uncontracting a standard basis set, such as correlation-consistent aug-cc-pVTZ, and extending it by systematically adding tight s and d functions. For elements in different rows of the periodic table, different progressions of functions are added. The new basis sets are shown to approach the basis set limit for calculations on a range of molecules containing hydrogen and first and second row atoms.
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Affiliation(s)
- Wei Deng
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520.,Gaussian Inc., 340 Quinnipiac St., Bldg 40, Wallingford, Connecticut 06492
| | - James R Cheeseman
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520.,Gaussian Inc., 340 Quinnipiac St., Bldg 40, Wallingford, Connecticut 06492
| | - Michael J Frisch
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520.,Gaussian Inc., 340 Quinnipiac St., Bldg 40, Wallingford, Connecticut 06492
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Affiliation(s)
| | - J. San Fabián
- Departamento de Química Física Aplicada, Universidad Autónoma de Madrid, Madrid, Spain
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15
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Zarycz MNC, Provasi PF. Investigation of the resonance-assisted hydrogen bond in model β-diketones through localized molecular orbital analysis of the spin-spin coupling constants related to the O-H···O hydrogen bond. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:120-129. [PMID: 25266873 DOI: 10.1002/mrc.4152] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Revised: 08/13/2014] [Accepted: 08/29/2014] [Indexed: 06/03/2023]
Abstract
The resonance-assisted hydrogen bond (HB) phenomenon has been studied theoretically by a localized molecular orbital (LMO) decomposition of the spin-spin coupling constants between atoms either involved or close to the O-H···O system of some β-diketones and their saturated counterparts. The analysis, carried out at the level of the second-order polarization propagator approximation, shows that the contributions in terms of LMO to the paramagnetic spin orbital and the spin dipolar Ramsey terms proof the importance of the delocalized π-electron structure supporting the idea of the existence of the resonance-assisted HB phenomenon phenomenon. The LMO contributions to the Fermi contact term indicate mainly the presence of the HB that may or not be linked to the π-electrons.
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Affiliation(s)
- M Natalia C Zarycz
- Department of Physics, University of Northeastern CONICET, Av. Libertad 5500, Corrientes, Argentina
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16
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Knight FR, Diamond LM, Arachchige KSA, Sanz Camacho P, Randall RAM, Ashbrook SE, Bühl M, Slawin AMZ, Woollins JD. Conformational Dependence of Through-Space Tellurium-Tellurium Spin-Spin Coupling inPeri-Substituted Bis(Tellurides). Chemistry 2014; 21:3613-27. [DOI: 10.1002/chem.201405599] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2014] [Indexed: 11/06/2022]
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17
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Cormanich RA, Rittner R, O’Hagan D, Bühl M. Analysis of CF···FC Interactions on Cyclohexane and Naphthalene Frameworks. J Phys Chem A 2014; 118:7901-10. [DOI: 10.1021/jp504568c] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rodrigo A. Cormanich
- School
of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, U.K
- Chemistry
Institute, State University of Campinas, P.O. Box 6154, 13083-971 Campinas, SP, Brazil
| | - Roberto Rittner
- Chemistry
Institute, State University of Campinas, P.O. Box 6154, 13083-971 Campinas, SP, Brazil
| | - David O’Hagan
- School
of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, U.K
| | - Michael Bühl
- School
of Chemistry, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, U.K
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18
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Contreras RH, Llorente T, Ducati LC, Tormena CF. Revisiting NMR Through-Space JFF Spin–Spin Coupling Constants for Getting Insight into Proximate F---F Interactions. J Phys Chem A 2014; 118:5068-75. [DOI: 10.1021/jp501929t] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rubén H. Contreras
- Department
of Physics, FCEyN, University of Buenos Aires and IFIBA-CONICET, C1053ABJ Buenos Aires, Argentina
| | - Tomás Llorente
- Department
of Physics, FCEyN, University of Buenos Aires and IFIBA-CONICET, C1053ABJ Buenos Aires, Argentina
| | - Lucas Colucci Ducati
- Institute
of Chemistry, University of Sao Paulo − USP, P.O. Box 26077, 05513-970 Sao Paulo - SP, Brazil
| | - Cláudio Francisco Tormena
- Chemistry
Institute, University of Campinas - UNICAMP, P.O. Box 6154, 13083-970 Campinas - SP, Brazil
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19
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Athukorala Arachchige KS, Sanz Camacho P, Ray MJ, Chalmers BA, Knight FR, Ashbrook SE, Bühl M, Kilian P, Slawin AMZ, Woollins JD. Sterically Restricted Tin Phosphines, Stabilized by Weak Intramolecular Donor–Acceptor Interactions. Organometallics 2014. [DOI: 10.1021/om500289b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
| | - Paula Sanz Camacho
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Matthew J. Ray
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Brian A. Chalmers
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Fergus R. Knight
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Sharon E. Ashbrook
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Michael Bühl
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | - Petr Kilian
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
| | | | - J. Derek Woollins
- EaSTCHEM,
School of Chemistry, University of St Andrews, St Andrews, Fife KY16 9ST, U.K
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20
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Hierso JC. Indirect nonbonded nuclear spin-spin coupling: a guide for the recognition and understanding of "through-space" NMR J constants in small organic, organometallic, and coordination compounds. Chem Rev 2014; 114:4838-67. [PMID: 24533483 DOI: 10.1021/cr400330g] [Citation(s) in RCA: 124] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Jean-Cyrille Hierso
- Institut de Chimie Moléculaire (ICMUB, UMR-CNRS 6302), Université de Bourgogne and Institut Universitaire de France (IUF) , 9 Avenue Alain Savary, BP 47870 Dijon F-21078, France
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21
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Stanford MW, Knight FR, Athukorala Arachchige KS, Sanz Camacho P, Ashbrook SE, Bühl M, Slawin AMZ, Woollins JD. Probing interactions through space using spin–spin coupling. Dalton Trans 2014; 43:6548-60. [DOI: 10.1039/c4dt00408f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of eight 5-(TeAr)-6-(SePh)acenaphthenes (Ar = aryl) were prepared and structurally characterised by X-ray crystallography, solution and solid-state NMR spectroscopy and DFT/B3LYP calculations.
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Affiliation(s)
- Martin W. Stanford
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | - Fergus R. Knight
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | | | - Paula Sanz Camacho
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | - Sharon E. Ashbrook
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | - Michael Bühl
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | - Alexandra M. Z. Slawin
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
| | - J. Derek Woollins
- EaStCHEM School of Chemistry and Centre for Magnetic Resonance
- University of St Andrews
- St Andrews KY16 9ST, UK
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22
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Afonin AV, Pavlov DV, Ushakov IA, Levanova EP, Levkovskaya GG. Application of chemical shifts in 1H and 13C NMR spectra to configuration assignment of Schiff bases in the liquid phase. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2013. [DOI: 10.1134/s1070428013080046] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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23
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Afonin AV, Pavlov DV, Albanov AI, Tarasova OA, Nedolya NA. Experimental and theoretical study of the intramolecular C-H···N and C-H···S hydrogen bonding effects in the 1H and 13C NMR spectra of the 2-(alkylsulfanyl)-5-amino-1-vinylpyrroles: a particular state of amine nitrogen. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2013; 51:414-423. [PMID: 23695830 DOI: 10.1002/mrc.3967] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Revised: 04/21/2013] [Accepted: 04/22/2013] [Indexed: 06/02/2023]
Abstract
In the (1)H NMR spectra of the 1-vinylpyrroles with amino- and alkylsulfanyl groups in 5 and 2 positions, an extraordinarily large difference between resonance positions of the HA and HB terminal methylene protons of the vinyl group is discovered. Also, the one-bond (1)J(C(β),H(B)) coupling constant is surprisingly greater than the (1)J(C(β),H(A)) coupling constant in pyrroles under investigation, while in all known cases, there was a reverse relationship between these coupling constants. These spectral anomalies are substantiated by quantum chemical calculations. The calculations show that the amine nitrogen lone pair is removed from the conjugation with the π-system of the pyrrole ring so that it is directed toward the HB hydrogen. These factors are favorable to the emergence of the intramolecular C-HB •••N hydrogen bonding in the s-cis(N) conformation. On the other hand, the spatial proximity of the sulfur to the HB hydrogen provides an opportunity of the intramolecular C-HB •••S hydrogen bonding in the s-cis(S) conformation. Presence of the hydrogen bond critical points as well as ring critical point for corresponding chelate ring revealed by a quantum theory of atoms in molecules (QTAIM) approach confirms the existence of the weak intramolecular C-H•••N and C-H•••S hydrogen bonding. Therefore, an unusual high-frequency shift of the HB signal and the increase in the (1)J(C(β),H(B)) coupling constant can be explained by the effects of hydrogen bonding.
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Affiliation(s)
- Andrei V Afonin
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St 1, 664033, Irkutsk, Russia
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24
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13C NMR chemical shifts of benzophenone azine as a benchmark for configurational assignment of azines with aromatic substituents. Russ Chem Bull 2013. [DOI: 10.1007/s11172-012-0151-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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25
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Bühl M, Knight FR, Křístková A, Malkin Ondík I, Malkina OL, Randall RAM, Slawin AMZ, Woollins JD. Weak Te,Te interactions through the looking glass of NMR spin-spin coupling. Angew Chem Int Ed Engl 2013; 52:2495-8. [PMID: 23345140 PMCID: PMC3625736 DOI: 10.1002/anie.201205998] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Revised: 11/14/2012] [Indexed: 11/18/2022]
Affiliation(s)
- Michael Bühl
- EaStCHEM School of Chemistry, University of St. Andrews, North Haugh, St. Andrews, Fife KY16 9ST, UK.
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26
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Bühl M, Knight FR, Křístková A, Malkin Ondík I, Malkina OL, Randall RAM, Slawin AMZ, Woollins JD. Weak Te,Te Interactions through the Looking Glass of NMR Spin-Spin Coupling. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201205998] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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27
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Structural studies of meso-CF3-3(5)-aryl(hetaryl)- and 3,5-diaryl(dihetaryl)-BODIPY dyes by 1H, 13C and 19F NMR spectroscopy and DFT calculations. J Fluor Chem 2013. [DOI: 10.1016/j.jfluchem.2012.11.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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28
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Zakrzewska A, Kolehmainen E, Valkonen A, Haapaniemi E, Rissanen K, Chęcińska L, Ośmiałowski B. Substituent effect in 2-benzoylmethylenequinoline difluoroborates exhibiting through-space couplings. Multinuclear magnetic resonance, X-ray diffraction, and computational study. J Phys Chem A 2012; 117:252-6. [PMID: 23252343 DOI: 10.1021/jp311072q] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The series of nine 2-benzoylmethylenequinoline difluoroborates have been synthesized and characterized by multinuclear magnetic resonance, X-ray diffraction (XRD), and computational methods. The through-space spin-spin couplings between (19)F and (1)H/(13)C nuclei have been observed in solution. The NMR chemical shifts have been correlated to the Hammett substituent constants. The crystal structures of six compounds have been solved by XRD. For two derivatives the X-ray wave function refinement was performed to evaluate the character of bonds in the NBF(2)O moiety by topological and integrated bond descriptors.
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Affiliation(s)
- Anna Zakrzewska
- Faculty of Technology and Chemical Engineering, University of Technology and Life Sciences, Seminaryjna 3, PL-85-326 Bydgoszcz, Poland
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29
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Feng Y, Davis RM, Warren WS. Accessing long-lived nuclear singlet states between chemically equivalent spins without breaking symmetry. NATURE PHYSICS 2012; 8:831-837. [PMID: 23505397 PMCID: PMC3596050 DOI: 10.1038/nphys2425] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Long-lived nuclear spin states could greatly enhance the applicability of hyperpolarized nuclear magnetic resonance. Using singlet states between inequivalent spin pairs has been shown to extend the signal lifetime by more than an order of magnitude compared to the spin lattice relaxation time (T1), but they have to be prevented from evolving into other states. In the most interesting case the singlet is between chemically equivalent spins, as it can then be inherently an eigenstate. However this presents major challenges in the conversion from bulk magnetization to singlet. In the only case demonstrated so far, a reversible chemical reaction to break symmetry was required. Here we present a pulse sequence technique that interconverts between singlet spin order and bulk magnetization without breaking the symmetry of the spin system. This technique is independent of field strength and is applicable to a broad range of molecules.
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Affiliation(s)
- Yesu Feng
- Department of Chemistry, Duke University, Durham, North Carolina 27708, USA
- Center for Molecular and Biomolecular Imaging, Duke University, Durham, North Carolina 27708, USA
| | - Ryan M. Davis
- Center for Molecular and Biomolecular Imaging, Duke University, Durham, North Carolina 27708, USA
- Department of Biomedical Engineering, Duke University, Durham, North Carolina 27708, USA
| | - Warren S. Warren
- Department of Chemistry, Duke University, Durham, North Carolina 27708, USA
- Center for Molecular and Biomolecular Imaging, Duke University, Durham, North Carolina 27708, USA
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30
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Afonin AV, Pavlov DV, Ushakov IA, Keiko NA. Stereospecificity of (1) H, (13) C and (15) N shielding constants in the isomers of methylglyoxal bisdimethylhydrazone: problem with configurational assignment based on (1) H chemical shifts. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2012; 50:502-510. [PMID: 22615146 DOI: 10.1002/mrc.3828] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2012] [Revised: 04/02/2012] [Accepted: 04/26/2012] [Indexed: 06/01/2023]
Abstract
In the (13) C NMR spectra of methylglyoxal bisdimethylhydrazone, the (13) C-5 signal is shifted to higher frequencies, while the (13) C-6 signal is shifted to lower frequencies on going from the EE to ZE isomer following the trend found previously. Surprisingly, the (1) H-6 chemical shift and (1) J(C-6,H-6) coupling constant are noticeably larger in the ZE isomer than in the EE isomer, although the configuration around the -CH═N- bond does not change. This paradox can be rationalized by the C-H⋯N intramolecular hydrogen bond in the ZE isomer, which is found from the quantum-chemical calculations including Bader's quantum theory of atoms in molecules analysis. This hydrogen bond results in the increase of δ((1) H-6) and (1) J(C-6,H-6) parameters. The effect of the C-H⋯N hydrogen bond on the (1) H shielding and one-bond (13) C-(1) H coupling complicates the configurational assignment of the considered compound because of these spectral parameters. The (1) H, (13) C and (15) N chemical shifts of the 2- and 8-(CH(3) )(2) N groups attached to the -C(CH(3) )═N- and -CH═N- moieties, respectively, reveal pronounced difference. The ab initio calculations show that the 8-(CH(3) )(2) N group conjugate effectively with the π-framework, and the 2-(CH(3) )(2) N group twisted out from the plane of the backbone and loses conjugation. As a result, the degree of charge transfer from the N-2- and N-8- nitrogen lone pairs to the π-framework varies, which affects the (1) H, (13) C and (15) N shieldings.
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Affiliation(s)
- Andrei V Afonin
- Institute of Chemistry, Siberian Branch of the Russian Academy of Science, Favorski St 1, 664033, Irkutsk, Russia
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31
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Ducati LC, Contreras RH, Tormena CF. Unexpected geometrical effects on paramagnetic spin-orbit and spin-dipolar 2J(FF) couplings. J Phys Chem A 2012; 116:4930-3. [PMID: 22533483 DOI: 10.1021/jp301912x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The second-rank tensor character of the paramagnetic spin-orbit and spin-dipolar contributions to nuclear spin-spin coupling constants is usually ignored when NMR measurements are carried out in the isotropic phase. However, in this study it is shown that isotropic (2)J(FF) couplings strongly depend on the relative orientation of the C-F bonds containing the coupling nuclei and the eigenvectors of such tensors. Predictions about such effect are obtained using a qualitative approach based on the polarization propagator formalism at the RPA, and results are corroborated performing high-level ab initio spin-spin coupling calculations at the SOPPA(CCSD)/EPR-III//MP2/EPR-III level in a model system. It is highlighted that no calculations at the RPA level were carried out in this work. The quite promising results reported in this paper suggest that similar properties are expected to hold for the second-rank nuclear magnetic shielding tensor.
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Affiliation(s)
- Lucas C Ducati
- Chemistry Institute, State University of Campinas, Caixa Postal 6154, 13084-971 Campinas, SP, Brazil
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32
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Zarycz N, Aucar GA. The analysis of NMR J-couplings of saturated and unsaturated compounds by the localized second order polarization propagator approach method. J Chem Phys 2012; 136:174115. [PMID: 22583218 DOI: 10.1063/1.3697844] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Calculations of NMR J-coupling with polarization propagators are not invariant under unitary transformations at second order level of approach, second order polarization propagator approach (SOPPA). They are only invariant at first order or random phase level of approach (RPA). We performed "localized" SOPPA (Loc-SOPPA), calculations of J-couplings applying two different schemes for the localization of molecular orbitals(LMO): Foster-Boys and Pipek-Mezey. We show here that results of such Loc-SOPPA calculations are different though not much: they are less than 6% different in the worst case. Therefore it is possible to apply them with confidence in the analysis of the transmission of different coupling mechanisms within the molecule. We are able now to get reliable information on what LMOs are the most important (and so which are not important) for a given J-coupling in a molecule. This information can then be used for selecting which are the paths that should be described with the highest possible accuracy for that J-coupling calculation. A few unsaturated compounds are analyzed: ethene, trans-difluoroethene or DiF-ethene, and imine. It is shown that different lone pairs (of p(z) or p(x/y) type) are responsible for the vicinal F-F J-coupling in DiF-ethene; and also the fact that the main LP contributor is not the same for the fermi contact and the spin-dipolar mechanisms. We also studied phosphorous containing compounds such as phosphine and cis-propylene phosphine. In both cases the analysis of the main LMO contributing to one-bond P-H coupling and through-space P-C coupling were performed. The above mentioned unsaturated molecular systems have quasiinstability problems that arise at RPA level of approach. We show here that they are mostly originated in the antibonding π∗ LMO, corresponding to the C=C or C=N double bonds. We performed the analysis of the origin of quasiinstabilities for the SD mechanism. The contribution of each kind of excitation terms to SOPPA calculations were considered, meaning the main contributions by single and double excitations. It is shown that one can get more than 97% of the total electron correlation contribution when including terms that mainly contain single excitations (though double-excitation matrix elements should still be calculated).
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Affiliation(s)
- Natalia Zarycz
- Department of Physics, Northeastern University of Argentina and IMIT Institute, Avenida Libertad 5460 - Corrientes, W 3404 AAS Argentina
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33
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Afonin AV, Pavlov DV, Ushakov IA, Levanova EP, Levkovskaya GG. Stereospecificity of 13C shielding constants in acetone azine as a tool for configurational assignment of ketone azines. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2012. [DOI: 10.1134/s1070428012030037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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34
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Zarycz N, Aucar GA. Analysis of Electron Correlation Effects and Contributions of NMR J-Couplings from Occupied Localized Molecular Orbitals. J Phys Chem A 2012; 116:1272-82. [DOI: 10.1021/jp209850z] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Natalia Zarycz
- Department of Physics, Natural and Exact Science Faculty,
Northeastern University of Argentina, Corrientes, Argentina
| | - Gustavo A. Aucar
- Department of Physics, Natural and Exact Science Faculty,
Northeastern University of Argentina, Corrientes, Argentina
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35
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Kjær H, Sauer SPA. Pople Style Basis Sets for the Calculation of NMR Spin-Spin Coupling Constants: the 6-31G-J and 6-311G-J Basis Sets. J Chem Theory Comput 2011; 7:4070-6. [PMID: 26598352 DOI: 10.1021/ct200546q] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a modification of the small and popular Pople basis sets, 6-31G and 6-311G, for density functional theory calculations of Fermi contact dominated NMR indirect nuclear spin-spin coupling constants. These new basis sets, 6-31G-J and 6-311G-J, contain twice the number of contracted s-type functions but the same number of contracted p-type functions as the original Pople basis set. For our test set of 12 one-, two- and three-bond coupling constants, the new basis sets augmented with the standard diffuse and polarization functions, i.e., the 6-31+G*-J and 6-311++G**-J basis sets, lead to a maximum deviation of 5 and 2 Hz, respectively, compared to results obtained with the 6 or more times larger aug-pcJ-4 basis set. In correlated wave function calculations using the second-order polarization propagator approximation, the deviations with respect to the aug-ccJ-pVQZ basis set are 8 and 3 Hz and thus slightly larger.
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Affiliation(s)
- Hanna Kjær
- Department of Chemistry, University of Copenhagen , DK-2100 Copenhagen Ø, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen , DK-2100 Copenhagen Ø, Denmark
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36
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Afonin AV, Pavlov DV, Albanov AI, Levanova EP, Levkovskaya GG. Study of stereospecificity of 1H, 13C, 15N and 77Se shielding constants in the configurational isomers of the selenophene-2-carbaldehyde azine by NMR spectroscopy and MP2-GIAO calculations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2011; 49:740-748. [PMID: 22002712 DOI: 10.1002/mrc.2824] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2011] [Revised: 08/10/2011] [Accepted: 08/21/2011] [Indexed: 05/31/2023]
Abstract
In the (1)H and (13)C NMR spectra of selenophene-2-carbaldehyde azine, the (1)H-5, (13)C-3 and (13)C-5 signals of the selenophene ring are shifted to higher frequencies, whereas those of the (1)H-1, (13)C-1, (13)C-2 and (13)C-4 are shifted to lower frequencies on going from the EE to ZZ isomer or from the E moiety to the Z moiety of EZ isomer. The (15)N chemical shift is significantly larger in the EE isomer relative to the ZZ isomer and in the E moiety relative to the Z moiety of EZ isomer. A very pronounced difference (60-65 mg/g) between the (77)Se resonance positions is revealed in the studied azine isomers, the (77)Se peak being shifted to higher frequencies in the ZZ isomer and in the Z moiety of EZ isomer. The trends in the changes of the measured chemical shifts are reasonably reproduced by the GIAO calculations at the MP2 level of the (1)H, (13)C, (15)N and (77)Se shielding constants in the energy-favorable conformation with the syn orientation of both selenophene rings relative to the C = N groups. The NBO analysis suggests that such an arrangement of the selenophene rings may take place because of a higher energy of some intramolecular interactions.
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Affiliation(s)
- Andrei V Afonin
- Institute of Chemistry, Siberian Branch of the Russian Academy of Science, Favorski St 1, 664033 Irkutsk, Russia
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37
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Anizelli PR, Favaro DC, Contreras RH, Tormena CF. Effect of Electronic Interactions on NMR 1JCF and 2JCF Couplings in cis- and trans-4-t-Butyl-2-fluorocyclohexanones and Their Alcohol Derivatives. J Phys Chem A 2011; 115:5684-92. [DOI: 10.1021/jp202592c] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Pedro R. Anizelli
- Chemistry Institute, University of Campinas, Post Office Box 6154, 13084-971 Campinas, SP, Brazil
| | - Denize C. Favaro
- Chemistry Institute, University of Campinas, Post Office Box 6154, 13084-971 Campinas, SP, Brazil
| | - Rubén H. Contreras
- Department of Physics, FCEyN, University of Buenos Aires and IFIBA-CONICET, Buenos Aires, Argentina
| | - Cláudio F. Tormena
- Chemistry Institute, University of Campinas, Post Office Box 6154, 13084-971 Campinas, SP, Brazil
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38
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Ghiviriga I, Zhang L, Martinez H, Contreras RH, Tormena CF, Nodin L, Dolbier WR. 19F chemical shifts, coupling constants and conformational preferences in monosubstituted perfluoroparacyclophanes. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2011; 49:93-105. [PMID: 21246624 DOI: 10.1002/mrc.2713] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2010] [Revised: 11/15/2010] [Accepted: 11/19/2010] [Indexed: 05/30/2023]
Abstract
In the process of studying the chemistry of perfluoro[2.2]paracyclophanes (PFPCs), a novel class of compounds, it became necessary to identify some disubstituted products. To achieve this goal, we characterize in this work some monosubstituted PFPCs, identifying their (19)F-(19) F coupling patterns, and establishing a methodology for the assignment of their (19)F chemical shifts. The pattern of coupling constants indicates a skewed geometry in which the upper deck moves towards or away from the substituent, depending on the substituent electron-donor character and size. Quantum chemical calculations, performed at the HF/6-311 + G(d,p)//B3LYP/EPR-III level of theory, confirmed the conformations inferred from coupling constants and reproduced well the values of the couplings. Transmission mechanisms for the FC term of four- and five-bond (19)F-(19) F couplings are discussed in detail. Understanding the conformational preferences of PFPCs and how they are reflected by the coupling constants facilitates the assignment of (19)F chemical shifts in monosubstituted PFPCs and the identification of the disubstituted products.
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Affiliation(s)
- Ion Ghiviriga
- Chemistry Department, University of Florida, Gainesville, 32611-7200, USA.
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39
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Kjaer H, Sauer SPA, Kongsted J. Benchmarking NMR indirect nuclear spin-spin coupling constants: SOPPA, SOPPA(CC2), and SOPPA(CCSD) versus CCSD. J Chem Phys 2011; 133:144106. [PMID: 20949986 DOI: 10.1063/1.3483197] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Accurate calculations of NMR indirect nuclear spin-spin coupling constants require especially optimized basis sets and correlated wave function methods such as CCSD or SOPPA(CCSD). Both methods scale as N(6), where N is the number of orbitals, which prevents routine applications to molecules with more than 10-15 nonhydrogen atoms. We have therefore developed a modification of the SOPPA(CCSD) method in which the CCSD singles and doubles amplitudes are replaced by CC2 singles and doubles amplitudes. This new method, called SOPPA(CC2), scales only as N(5), like the original SOPPA-method. The performance of the SOPPA(CC2) method for the calculation of indirect nuclear spin-spin coupling constants is compared to SOPPA and SOPPA(CCSD) employing a set of benchmark molecules. We also investigate the basis set dependence by employing three different basis sets optimized for spin-spin coupling constants, namely the HuzIV-su4, ccJ-pVTZ, and ccJ-pVQZ basis sets. The results of the corresponding CCSD calculations are used as a theoretical reference.
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Affiliation(s)
- Hanna Kjaer
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
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40
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Afonin AV, Ushakov IA, Vashchenko AV, Kondrashov EV, Rulev AY. GIAO, DFT, AIM and NBO analysis of the N-H...O intramolecular hydrogen-bond influence on the 1J(N,H) coupling constant in push-pull diaminoenones. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:661-670. [PMID: 20661903 DOI: 10.1002/mrc.2643] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
In the series of diaminoenones, large high-frequency shifts of the (1)H NMR of the N-H group in the cis-position relative to the carbonyl group suggests strong N-H...O intramolecular hydrogen bonding comprising a six-membered chelate ring. The N-H...O hydrogen bond causes an increase of the (1)J(N,H) coupling constant by 2-4 Hz and high-frequency shift of the (15)N signal by 9-10 ppm despite of the lengthening of the relevant N-H bond. These experimental trends are substantiated by gauge-independent atomic orbital and density functional theory calculations of the shielding and coupling constants in the 3,3-bis(isopropylamino)-1-(aryl)prop-2-en-1-one (12) for conformations with the Z- and E-orientations of the carbonyl group relative to the N-H group. The effects of the N-H...O hydrogen-bond on the NMR parameters are analyzed with the atoms-in-molecules (AIM) and natural bond orbital (NBO) methods. The AIM method indicates a weakening of the N-H...O hydrogen bond as compared with that of 1,1-di(pyrrol-2-yl)-2-formylethene (13) where N-H...O hydrogen bridge establishes a seven-membered chelate ring, and the corresponding (1)J(N,H) coupling constant decreases. The NBO method reveals that the LP(O) --> sigma*(N-H) hyperconjugative interaction is weakened on going from the six-membered chelate ring to the seven-membered one due to a more bent hydrogen bond in the former case. A dominating effect of the N-H bond rehybridization, owing to an electrostatic term in the hydrogen bonding, seems to provide an increase of the (1)J(N,H) value as a consequence of the N-H...O hydrogen bonding in the studied diaminoenones.
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41
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Afonin AV, Ushakov IA, Pavlov DV, Ivanov AV, Mikhaleva AI. Study of conformations and hydrogen bonds in the configurational isomers of pyrrole-2-carbaldehyde oxime by 1H, 13C and 15N NMR spectroscopy combined with MP2 and DFT calculations and NBO analysis. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:685-692. [PMID: 20623827 DOI: 10.1002/mrc.2650] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The (1)H, (13)C and (15)N NMR studies have shown that the E and Z isomers of pyrrole-2-carbaldehyde oxime adopt preferable conformation with the syn orientation of the oxime group with respect to the pyrrole ring. The syn conformation of E and Z isomers of pyrrole-2-carbaldehyde oxime is stabilized by the N-H...N and N-H...O intramolecular hydrogen bonds, respectively. The N-H...N hydrogen bond in the E isomer causes the high-frequency shift of the bridge proton signal by about 1 ppm and increase the (1)J(N, H) coupling by approximately 3 Hz. The bridge proton shows further deshielding and higher increase of the (1)J(N, H) coupling constant due to the strengthening of the N-H...O hydrogen bond in the Z isomer. The MP2 calculations indicate that the syn conformation of E and Z isomers is by approximately 3.5 kcal/mol energetically less favorable than the anti conformation. The calculations of (1)H shielding and (1)J(N, H) coupling in the syn and anti conformations allow the contribution to these constants from the N-H...N and N-H...O hydrogen bondings to be estimated. The NBO analysis suggests that the N-H...N hydrogen bond in the E isomer is a pure electrostatic interaction while the charge transfer from the oxygen lone pair to the antibonding orbital of the N-H bond through the N-H...O hydrogen bond occurs in the Z isomer.
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Affiliation(s)
- Andrei V Afonin
- Institute of Chemistry, Siberian Branch of the Russian Academy of Science, Favorski St 1, 664033 Irkutsk, Russia
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Marek R, Křístková A, Maliňáková K, Toušek J, Marek J, Hocek M, Malkina OL, Malkin VG. Interpretation of Indirect Nuclear Spin−Spin Couplings in Isomers of Adenine: Novel Approach to Analyze Coupling Electron Deformation Density Using Localized Molecular Orbitals. J Phys Chem A 2010; 114:6689-700. [DOI: 10.1021/jp102186r] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Radek Marek
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Anežka Křístková
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Kateřina Maliňáková
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Jaromír Toušek
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Jaromír Marek
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Michal Hocek
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Olga L. Malkina
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
| | - Vladimir G. Malkin
- National Center for Biomolecular Research, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovak Republic, Laboratory of Functional Genomics and Proteomics, Masaryk University, Kamenice 5/A2, CZ-62500 Brno, Czech Republic, and Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, CZ-16610 Prague, Czech Republic
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Afonin AV, Vashchenko AV. Theoretical study of bifurcated hydrogen bonding effects on the 1J(N,H), 1hJ(N,H), 2hJ(N,N) couplings and 1H, 15N shieldings in model pyrroles. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:309-317. [PMID: 20198609 DOI: 10.1002/mrc.2579] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
According to the density functional theory calculations, the X...H...N (X=N, O) intramolecular bifurcated (three-centered) hydrogen bond with one hydrogen donor and two hydrogen acceptors causes a significant decrease of the (1h)J(N,H) and (2h)J(N,N) coupling constants across the N-H...N hydrogen bond and an increase of the (1)J(N,H) coupling constant across the N-H covalent bond in the 2,5-disubstituted pyrroles. This occurs due to a weakening of the N-H...N hydrogen bridge resulting in a lengthening of the N...H distance and a decrease of the hydrogen bond angle at the bifurcated hydrogen bond formation. The gauge-independent atomic orbital calculations of the shielding constants suggest that a weakening of the N-H...N hydrogen bridge in case of the three-centered hydrogen bond yields a shielding of the bridge proton and deshielding of the acceptor nitrogen atom. The atoms-in-molecules analysis shows that an attenuation of the (1h)J(N,H) and (2h)J(N,N) couplings in the compounds with bifurcated hydrogen bond is connected with a decrease of the electron density rho(H...N) at the hydrogen bond critical point and Laplacian of this electron density nabla(2)rho(H...N). The natural bond orbital analysis suggests that the additional N-H...X interaction partly inhibits the charge transfer from the nitrogen lone pair to the sigma*(N-H) antibonding orbital across hydrogen bond weakening of the (1h)J(N,H) and (2h)J(N,N) trans-hydrogen bond couplings through Fermi-contact mechanism. An increase of the nitrogen s-character percentage of the N-H bond in consequence of the bifurcated hydrogen bonding leads to an increase of the (1)J(N,H) coupling constant across the N-H covalent bond and deshielding of the hydrogen donor nitrogen atom.
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Affiliation(s)
- Andrei V Afonin
- Institute of Chemistry, Siberian Branch of the Russian Academy of Science, Favorski St. 1, 664033 Irkutsk, Russia.
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Yachmenev A, Yurchenko SN, Paidarová I, Jensen P, Thiel W, Sauer SPA. Thermal averaging of the indirect nuclear spin-spin coupling constants of ammonia: The importance of the large amplitude inversion mode. J Chem Phys 2010; 132:114305. [DOI: 10.1063/1.3359850] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Armanino N, Koller R, Togni A. Electrophilic Trifluoromethylation of Primary Phosphines: Synthesis of a P-Bis(trifluoromethyl) Derivative of BINAP. Organometallics 2010. [DOI: 10.1021/om100015s] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicolas Armanino
- Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Raffael Koller
- Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Antonio Togni
- Department of Chemistry and Applied Biosciences, Swiss Federal Institute of Technology, ETH Zürich, CH-8093 Zürich, Switzerland
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Hierso JC, Armspach D, Matt D. “Through-space” nuclear spin–spin couplings in ferrocenyl polyphosphanes and diphosphino cavitands: A new way of gathering structural information in constrained P(III) ligands by NMR. CR CHIM 2009. [DOI: 10.1016/j.crci.2009.03.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Afonin AV, Ushakov IA, Vashchenko AV, Simonenko DE, Ivanov AV, Vasil'tsov AM, Mikhaleva AI, Trofimov BA. C-H...N and C-H...O intramolecular hydrogen bonding effects in the 1H, 13C and 15N NMR spectra of the configurational isomers of 1-vinylpyrrole-2-carbaldehyde oxime substantiated by DFT calculations. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2009; 47:105-112. [PMID: 19006103 DOI: 10.1002/mrc.2358] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
According to the (1)H, (13)C and (15)N NMR spectroscopic data and DFT calculations, the E-isomer of 1-vinylpyrrole-2-carbaldehyde adopts preferable conformation with the anti-orientation of the vinyl group relative to the carbaldehyde oxime group and with the syn-arrangement of the carbaldehyde oxime group with reference to the pyrrole ring. This conformation is stabilized by the C-H...N intramolecular hydrogen bond between the alpha-hydrogen of the vinyl group and the oxime group nitrogen, which causes a pronounced high-frequency shift of the alpha-hydrogen signal in (1)H NMR (approximately 0.5 ppm) and an increase in the corresponding one-bond (13)C-(1)H coupling constant (ca 4 Hz). In the Z-isomer, the carbaldehyde oxime group turns to the anti-position with respect to the pyrrole ring. The C-H...O intramolecular hydrogen bond between the H-3 hydrogen of the pyrrole ring and the oxime group oxygen is realized in this case. Due to such hydrogen bonding, the H-3 hydrogen resonance is shifted to a higher frequency by about 1 ppm and the one-bond (13)C-(1)H coupling constant for this proton increases by approximately 5 Hz.
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Affiliation(s)
- Andrei V Afonin
- Irkutsk Institute of Chemistry, Favorsky Street 1, 664033 Irkutsk, Russia.
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Provasi PF, A. Sauer SP. Analysis of isotope effects in NMR one-bond indirect nuclear spin–spin coupling constants in terms of localized molecular orbitals. Phys Chem Chem Phys 2009; 11:3987-95. [DOI: 10.1039/b819376b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Pedersoli S, Tormena CF, dos Santos FP, Contreras RH, Rittner R. Stereochemical behavior of 1JCH and 2JCH NMR coupling constants in α-substituted acetamides. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2008.04.040] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Beringhelli T, Donghi D, Maggioni D, D’Alfonso G. Solution structure, dynamics and speciation of perfluoroaryl boranes through 1H, 11B and 19F NMR spectroscopy. Coord Chem Rev 2008. [DOI: 10.1016/j.ccr.2008.01.018] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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