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For: Sallee NA, Yeh BJ, Lim WA. Engineering modular protein interaction switches by sequence overlap. J Am Chem Soc 2007;129:4606-11. [PMID: 17381089 DOI: 10.1021/ja0672728] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Omersa N, Aden S, Kisovec M, Podobnik M, Anderluh G. Design of Protein Logic Gate System Operating on Lipid Membranes. ACS Synth Biol 2020;9:316-328. [PMID: 31995709 PMCID: PMC7308068 DOI: 10.1021/acssynbio.9b00340] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Indexed: 12/16/2022]
2
Influence of Secondary-Structure Folding on the Mutually Exclusive Folding Process of GL5/I27 Protein: Evidence from Molecular Dynamics Simulations. Int J Mol Sci 2016;17:ijms17111962. [PMID: 27886109 PMCID: PMC5133956 DOI: 10.3390/ijms17111962] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 10/22/2016] [Accepted: 11/16/2016] [Indexed: 01/04/2023]  Open
3
Shen S, Rodrigo G, Prakash S, Majer E, Landrain TE, Kirov B, Daròs JA, Jaramillo A. Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression. Nucleic Acids Res 2015;43:5158-70. [PMID: 25916845 PMCID: PMC4446421 DOI: 10.1093/nar/gkv287] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Accepted: 03/24/2015] [Indexed: 11/12/2022]  Open
4
Idili A, Plaxco KW, Vallée-Bélisle A, Ricci F. Thermodynamic basis for engineering high-affinity, high-specificity binding-induced DNA clamp nanoswitches. ACS NANO 2013;7:10863-9. [PMID: 24219761 PMCID: PMC4281346 DOI: 10.1021/nn404305e] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
5
Peng Q, Kong N, Wang HCE, Li H. Designing redox potential-controlled protein switches based on mutually exclusive proteins. Protein Sci 2012;21:1222-30. [PMID: 22733630 DOI: 10.1002/pro.2109] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
6
Maharbiz MM. Synthetic multicellularity. Trends Cell Biol 2012;22:617-23. [PMID: 23041241 DOI: 10.1016/j.tcb.2012.09.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2012] [Revised: 08/23/2012] [Accepted: 09/04/2012] [Indexed: 11/19/2022]
7
Peisajovich SG. Evolutionary synthetic biology. ACS Synth Biol 2012;1:199-210. [PMID: 23651203 DOI: 10.1021/sb300012g] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
8
Lu MS, Mauser JF, Prehoda KE. Ultrasensitive synthetic protein regulatory networks using mixed decoys. ACS Synth Biol 2012;1:65-72. [PMID: 22639735 DOI: 10.1021/sb200010w] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
9
Li J, Gierach I, Gillies A, Warden CD, Wood DW. Engineering and optimization of an allosteric biosensor protein for peroxisome proliferator-activated receptor γ ligands. Biosens Bioelectron 2011;29:132-9. [PMID: 21893405 PMCID: PMC3215401 DOI: 10.1016/j.bios.2011.08.006] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2011] [Revised: 07/07/2011] [Accepted: 08/03/2011] [Indexed: 11/18/2022]
10
Mills BM, Chong LT. Molecular simulations of mutually exclusive folding in a two-domain protein switch. Biophys J 2011;100:756-764. [PMID: 21281591 DOI: 10.1016/j.bpj.2010.12.3710] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2010] [Revised: 12/13/2010] [Accepted: 12/17/2010] [Indexed: 01/11/2023]  Open
11
Stratton MM, Loh SN. Converting a protein into a switch for biosensing and functional regulation. Protein Sci 2011;20:19-29. [PMID: 21064163 DOI: 10.1002/pro.541] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
12
Golynskiy MV, Koay MS, Vinkenborg JL, Merkx M. Engineering Protein Switches: Sensors, Regulators, and Spare Parts for Biology and Biotechnology. Chembiochem 2011;12:353-61. [DOI: 10.1002/cbic.201000642] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2010] [Indexed: 12/31/2022]
13
Grünberg R, Serrano L. Strategies for protein synthetic biology. Nucleic Acids Res 2010;38:2663-75. [PMID: 20385577 PMCID: PMC2860127 DOI: 10.1093/nar/gkq139] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
14
Engineering Ca2+/calmodulin-mediated modulation of protein translocation by overlapping binding and signaling peptide sequences. Cell Calcium 2010;47:369-77. [PMID: 20167369 DOI: 10.1016/j.ceca.2010.01.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2009] [Revised: 01/09/2010] [Accepted: 01/22/2010] [Indexed: 11/23/2022]
15
Gerek ZN, Keskin O, Ozkan SB. Identification of specificity and promiscuity of PDZ domain interactions through their dynamic behavior. Proteins 2010;77:796-811. [PMID: 19585657 DOI: 10.1002/prot.22492] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
16
Generation of new protein functions by nonhomologous combinations and rearrangements of domains and modules. Curr Opin Biotechnol 2009;20:398-404. [PMID: 19700302 DOI: 10.1016/j.copbio.2009.07.007] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2009] [Revised: 07/13/2009] [Accepted: 07/25/2009] [Indexed: 01/26/2023]
17
Suárez M, Jaramillo A. Challenges in the computational design of proteins. J R Soc Interface 2009;6 Suppl 4:S477-91. [PMID: 19324680 PMCID: PMC2843960 DOI: 10.1098/rsif.2008.0508.focus] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2008] [Accepted: 02/04/2009] [Indexed: 11/12/2022]  Open
18
Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors. Proc Natl Acad Sci U S A 2009;106:13802-7. [PMID: 19666496 DOI: 10.1073/pnas.0904005106] [Citation(s) in RCA: 127] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
19
Ostermeier M. Designing switchable enzymes. Curr Opin Struct Biol 2009;19:442-8. [PMID: 19473830 DOI: 10.1016/j.sbi.2009.04.007] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2009] [Accepted: 04/20/2009] [Indexed: 12/01/2022]
20
Synthetic gene networks: the next wave in biotechnology? Trends Biotechnol 2009;27:368-74. [PMID: 19409633 DOI: 10.1016/j.tibtech.2009.03.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2008] [Revised: 02/24/2009] [Accepted: 03/02/2009] [Indexed: 11/22/2022]
21
Boyle PM, Silver PA. Harnessing nature's toolbox: regulatory elements for synthetic biology. J R Soc Interface 2009;6 Suppl 4:S535-46. [PMID: 19324675 DOI: 10.1098/rsif.2008.0521.focus] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
22
Stratton MM, Mitrea DM, Loh SN. A Ca2+-sensing molecular switch based on alternate frame protein folding. ACS Chem Biol 2008;3:723-32. [PMID: 18947182 DOI: 10.1021/cb800177f] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
23
Strickland D, Moffat K, Sosnick TR. Light-activated DNA binding in a designed allosteric protein. Proc Natl Acad Sci U S A 2008;105:10709-14. [PMID: 18667691 PMCID: PMC2504796 DOI: 10.1073/pnas.0709610105] [Citation(s) in RCA: 238] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2007] [Indexed: 11/18/2022]  Open
24
Sallee NA, Rivera GM, Dueber JE, Vasilescu D, Mullins RD, Mayer BJ, Lim WA. The pathogen protein EspF(U) hijacks actin polymerization using mimicry and multivalency. Nature 2008;454:1005-8. [PMID: 18650806 DOI: 10.1038/nature07170] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2007] [Accepted: 06/12/2008] [Indexed: 11/09/2022]
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