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Ou YC, Zhong RM, Wu JZ. Recent advances in structures and applications of coordination polymers based on cyclohexanepolycarboxylate ligands. Dalton Trans 2022; 51:2992-3003. [DOI: 10.1039/d1dt03888e] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Coordination polymers (CPs) are emerging crystalline materials constructed by metal entities and organic ligands through coordination bonds, containing infinite coordination units in one, two, or three dimensions. Here an overview...
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2
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Kang S, Noh C, Kang H, Shin JY, Kim SY, Kim S, Son MG, Park E, Song HK, Shin S, Lee S, Kim NK, Jung Y, Lee Y. Dynamics and Entropy of Cyclohexane Rings Control pH-Responsive Reactivity. JACS AU 2021; 1:2070-2079. [PMID: 34841418 PMCID: PMC8611792 DOI: 10.1021/jacsau.1c00354] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Indexed: 05/31/2023]
Abstract
Activation entropy (ΔS ‡) is not normally considered the main factor in determining the reactivity of unimolecular reactions. Here, we report that the intramolecular degradation of six-membered ring compounds is mainly determined by the ΔS ‡, which is strongly influenced by the ring-flipping motion and substituent geometry. Starting from the unique difference between the pH-dependent degradation kinetics of geometric isomers of 1,2-cyclohexanecarboxylic acid amide (1,2-CHCAA), where only the cis isomer can readily degrade under weakly acidic conditions (pH < 5.5), we found that the difference originated from the large difference in ΔS ‡ of 16.02 cal·mol-1·K-1. While cis-1,2-CHCAA maintains a preference for the classical chair cyclohexane conformation, trans-1,2-CHCAA shows dynamic interconversion between the chair and twisted boat conformations, which was supported by both MD simulations and VT-NMR analysis. Steric repulsion between the bulky 1,2-substituents of the trans isomer is one of the main reasons for the reduced energy barrier between ring conformations that facilitates dynamic ring inversion motions. Consequently, the more dynamic trans isomer exhibits much a larger loss in entropy during the activation process due to the prepositioning of the reactant than the cis isomer, and the pH-dependent degradation of the trans isomer is effectively suppressed. When the ring inversion motion is inhibited by an additional methyl substituent on the cyclohexane ring, the pH degradability can be dramatically enhanced for even the trans isomer. This study shows a unique example in which spatial arrangement and dynamic properties can strongly influence molecular reactivity in unimolecular reactions, and it will be helpful for the future design of a reactive structure depending on dynamic conformational changes.
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Affiliation(s)
- Sunyoung Kang
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Chanwoo Noh
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Hyosik Kang
- Department
of Chemistry, Gachon University, Seongnam, Gyunggido 13120, Republic of Korea
| | - Ji-Yeon Shin
- Advanced
Analysis Center, Korea Institute of Science
and Technology, Seoul 02792, Republic of Korea
- Department
of Life Sciences, Korea University, Seoul 02841, Republic of Korea
| | - So-Young Kim
- Advanced
Analysis Center, Korea Institute of Science
and Technology, Seoul 02792, Republic of Korea
| | - Seulah Kim
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Moon-Gi Son
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Eunseok Park
- Bruker
Biospin Korea, Seongnam, Gyunggido 13493, Republic of Korea
| | - Hyun Kyu Song
- Department
of Life Sciences, Korea University, Seoul 02841, Republic of Korea
| | - Seokmin Shin
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Sanghun Lee
- Department
of Chemistry, Gachon University, Seongnam, Gyunggido 13120, Republic of Korea
| | - Nak-Kyoon Kim
- Advanced
Analysis Center, Korea Institute of Science
and Technology, Seoul 02792, Republic of Korea
| | - YounJoon Jung
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
| | - Yan Lee
- Department
of Chemistry, Seoul National University, Seoul 08826, Republic of Korea
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3
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Ruyonga MR, Mendoza O, Browne M, Samoshin VV. Exploration of
trans
‐2‐(azaarylsulfanyl)‐cyclohexanols as potential pH‐triggered conformational switches. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Mulinde R. Ruyonga
- Department of Chemistry, College of the Pacific University of the Pacific Stockton CA USA
| | - Oscar Mendoza
- Department of Chemistry, College of the Pacific University of the Pacific Stockton CA USA
| | - Michael Browne
- Department of Chemistry, College of the Pacific University of the Pacific Stockton CA USA
| | - Vyacheslav V. Samoshin
- Department of Chemistry, College of the Pacific University of the Pacific Stockton CA USA
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Garza AJ, Pakhira S, Bell AT, Mendoza-Cortes JL, Head-Gordon M. Reaction mechanism of the selective reduction of CO 2 to CO by a tetraaza [Co IIN 4H] 2+ complex in the presence of protons. Phys Chem Chem Phys 2018; 20:24058-24064. [PMID: 30204173 DOI: 10.1039/c8cp01963k] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The tetraaza [CoIIN4H]2+ complex (1) is remarkable for its ability to selectively reduce CO2 to CO with 45% Faradaic efficiency and a CO to H2 ratio of 3 : 2. We employ density functional theory (DFT) to determine the reasons behind the unusual catalytic properties of 1 and the most likely mechanism for CO2 reduction. The selectivity for CO2 over proton reduction is explained by analyzing the catalyst's affinity for the possible ligands present under typical reaction conditions: acetonitrile, water, CO2, and bicarbonate. After reduction of the catalyst by two electrons, formation of [CoIN4H]+-CO2- is strongly favored. Based on thermodynamic and kinetic data, we establish that the only likely route for producing CO from here consists of a protonation step to yield [CoIN4H]+-CO2H, followed by reaction with CO2 to form [CoIIN4H]2+-CO and bicarbonate. This conclusion corroborates the idea of a direct role of CO2 as a Lewis acid to assist in C-O bond dissociation, a conjecture put forward by other authors to explain recent experimental observations. The pathway to formic acid is predicted to be forbidden by high activation barriers, in accordance with the products that are known to be generated by 1. Calculated physical observables such as standard reduction potentials and the turnover frequency for our proposed catalytic cycle are in agreement with available experimental data reported in the literature. The mechanism also makes a prediction that may be experimentally verified: that the rate of CO formation should increase linearly with the partial pressure of CO2.
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Affiliation(s)
- Alejandro J Garza
- Joint Center for Artificial Photosynthesis, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
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5
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DFT calculations and NMR measurements applied to the conformational analysis of cis and trans -3-phenylaminocyclohexyl N,N -dimethylcarbamates. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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6
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Thuéry P, Atoini Y, Harrowfield J. Counterion-Controlled Formation of an Octanuclear Uranyl Cage with cis-1,2-Cyclohexanedicarboxylate Ligands. Inorg Chem 2018; 57:6283-6288. [DOI: 10.1021/acs.inorgchem.8b00147] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pierre Thuéry
- NIMBE, CEA, CNRS, Université Paris-Saclay, CEA Saclay, 91191 Gif-sur-Yvette, France
| | - Youssef Atoini
- ISIS, Université de Strasbourg, 8 allée Gaspard Monge, 67083 Strasbourg, France
| | - Jack Harrowfield
- ISIS, Université de Strasbourg, 8 allée Gaspard Monge, 67083 Strasbourg, France
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7
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Samoshin VV, Zheng Y, Liu X. Trans
-2-Aminocyclohexanol derivatives as pH-triggered conformational switches. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3689] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Vyacheslav V. Samoshin
- Department of Chemistry, College of the Pacific; University of the Pacific; Stockton CA 95211 USA
| | - Yu Zheng
- Department of Chemistry, College of the Pacific; University of the Pacific; Stockton CA 95211 USA
| | - Xin Liu
- Department of Chemistry, College of the Pacific; University of the Pacific; Stockton CA 95211 USA
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8
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Erickson PR, Walpen N, Guerard JJ, Eustis SN, Arey JS, McNeill K. Controlling Factors in the Rates of Oxidation of Anilines and Phenols by Triplet Methylene Blue in Aqueous Solution. J Phys Chem A 2015; 119:3233-43. [DOI: 10.1021/jp511408f] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Paul R. Erickson
- Institute
of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - Nicolas Walpen
- Institute
of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - Jennifer J. Guerard
- Environmental
Chemistry Modeling Laboratory, EPFL (Ecole Polytechnique Fédérale de Lausanne), 1015 Lausanne, Switzerland
| | - Soren N. Eustis
- Institute
of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - J. Samuel Arey
- Environmental
Chemistry Modeling Laboratory, EPFL (Ecole Polytechnique Fédérale de Lausanne), 1015 Lausanne, Switzerland
| | - Kristopher McNeill
- Institute
of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
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9
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Vibhute AM, Sureshan KM. Strength from Weakness: Conformational Divergence between Solid and Solution States of Substituted Cyclitols Facilitated by CH···O Hydrogen Bonding. J Org Chem 2014; 79:4892-908. [DOI: 10.1021/jo5004778] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Amol M. Vibhute
- School
of Chemistry, Indian Institute of Science Education and Research, Thiruvananthapuram, Thiruvananthapuram, Kerala 695016, India
| | - Kana M. Sureshan
- School
of Chemistry, Indian Institute of Science Education and Research, Thiruvananthapuram, Thiruvananthapuram, Kerala 695016, India
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Samoshin AV, Veselov IS, Chertkov VA, Yaroslavov AA, Grishina GV, Samoshina NM, Samoshin VV. Fliposomes: new amphiphiles based on trans-3,4-bis(acyloxy)-piperidine able to perform a pH-triggered conformational flip and cause an instant cargo release from liposomes. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.07.156] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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11
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Emenike BU, Carroll WR, Roberts JD. Conformational Preferences of cis-1,3-Cyclopentanedicarboxylic Acid and Its Salts by 1H NMR Spectroscopy: Energetics of Intramolecular Hydrogen Bonds in DMSO. J Org Chem 2013; 78:2005-11. [DOI: 10.1021/jo302049z] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bright U. Emenike
- Gates and Crellin Laboratories of
Chemistry, California Institute of Technology, Pasadena, California
91125, United States
| | - William R. Carroll
- Gates and Crellin Laboratories of
Chemistry, California Institute of Technology, Pasadena, California
91125, United States
| | - John D. Roberts
- Gates and Crellin Laboratories of
Chemistry, California Institute of Technology, Pasadena, California
91125, United States
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12
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Faggi E, Luis SV, Alfonso I. Minimalistic amino amides as models to study N–H⋯π interactions and their implication in the side chain folding of pseudopeptidic molecules. RSC Adv 2013. [DOI: 10.1039/c3ra41843j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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