1
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Koçak A, Homer AK, Feida A, Telschow F, Gorenflos López JL, Baydaroğlu C, Gradzielski M, Hackenberger CPR, Alexiev U, Seitz O. Fluorogenic cell surface glycan labelling with fluorescence molecular rotor dyes and nucleic acid stains. Chem Commun (Camb) 2024; 60:4785-4788. [PMID: 38602157 DOI: 10.1039/d4cc00884g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2024]
Abstract
We show that covalent labelling of sialic acids on live cell surfaces or mucin increases the fluorescence of the fluorescence molecular rotors (FMRs) CCVJ, Cy3 and thioazole orange, enabling wash-free imaging of cell surfaces. Dual labelling with an FMR and an environmentally insensitive dye allows detection of changes that occur, for example, when cross-linking is altered.
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Affiliation(s)
- Alen Koçak
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
| | - Amal K Homer
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
| | - Antonia Feida
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
| | - Florian Telschow
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Jacob L Gorenflos López
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125 Berlin, Germany
| | - Cihan Baydaroğlu
- Institute of Chemistry, Technische Universität Berlin, Straße des 17. Juni 124, 10623 Berlin, Germany
| | - Michael Gradzielski
- Institute of Chemistry, Technische Universität Berlin, Straße des 17. Juni 124, 10623 Berlin, Germany
| | - Christian P R Hackenberger
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125 Berlin, Germany
| | - Ulrike Alexiev
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Oliver Seitz
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany.
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2
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Coïs J, Bachollet SPJT, Sanchez L, Pietrancosta N, Vialou V, Mallet JM, Dumat B. Design of Bright Chemogenetic Reporters Based on the Combined Engineering of Fluorogenic Molecular Rotors and of the HaloTag Protein. Chemistry 2024:e202400641. [PMID: 38573546 DOI: 10.1002/chem.202400641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 04/04/2024] [Accepted: 04/04/2024] [Indexed: 04/05/2024]
Abstract
The combination of fluorogenic probes (fluorogens) and self-labeling protein tags represent a promising tool for imaging biological processes with high specificity but it requires the adequation between the fluorogen and its target to ensure a good activation of its fluorescence. In this work, we report a strategy to develop molecular rotors that specifically target HaloTag with a strong enhancement of their fluorescence. The divergent design facilitates the diversification of the structures to tune the photophysical and cellular properties. Four bright fluorogens with emissions ranging from green to red were identified and applied in wash-free live cell imaging experiments with good contrast and selectivity. A HaloTag mutant adapted from previous literature reports was also tested and shown to further improve the brightness and reaction rate of the most promising fluorogen of the series both in vitro and in cells. This work opens new possibilities to develop bright chemogenetic reporters with diverse photophysical and biological properties by exploring a potentially large chemical space of simple dipolar fluorophores in combination with protein engineering.
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Affiliation(s)
- Justine Coïs
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
- Laboratoire Neurosciences Paris Seine, Sorbonne Université, CNRS, INSERM, 75005, Paris, France
| | - Sylvestre P J T Bachollet
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Louis Sanchez
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Nicolas Pietrancosta
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
- Laboratoire Neurosciences Paris Seine, Sorbonne Université, CNRS, INSERM, 75005, Paris, France
| | - Vincent Vialou
- Laboratoire Neurosciences Paris Seine, Sorbonne Université, CNRS, INSERM, 75005, Paris, France
| | - Jean-Maurice Mallet
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
| | - Blaise Dumat
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005, Paris, France
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3
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Paez‐Perez M, Kuimova MK. Molecular Rotors: Fluorescent Sensors for Microviscosity and Conformation of Biomolecules. Angew Chem Int Ed Engl 2024; 63:e202311233. [PMID: 37856157 PMCID: PMC10952837 DOI: 10.1002/anie.202311233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 10/17/2023] [Accepted: 10/17/2023] [Indexed: 10/20/2023]
Abstract
The viscosity and crowding of biological environment are considered vital for the correct cellular function, and alterations in these parameters are known to underly a number of pathologies including diabetes, malaria, cancer and neurodegenerative diseases, to name a few. Over the last decades, fluorescent molecular probes termed molecular rotors proved extremely useful for exploring viscosity, crowding, and underlying molecular interactions in biologically relevant settings. In this review, we will discuss the basic principles underpinning the functionality of these probes and will review advances in their use as sensors for lipid order, protein crowding and conformation, temperature and non-canonical nucleic acid structures in live cells and other relevant biological settings.
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Affiliation(s)
- Miguel Paez‐Perez
- Department of Chemistry, Imperial College London, MSRHImperial College LondonWood LaneLondonW12 0BZUK
| | - Marina K. Kuimova
- Department of Chemistry, Imperial College London, MSRHImperial College LondonWood LaneLondonW12 0BZUK
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4
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Gong X, Guo R, Li X, Yang Y, Lin W. A red-emitting mitochondria targetable fluorescent probe for detecting viscosity in HeLa, zebrafish, and mice. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:293-300. [PMID: 38115761 DOI: 10.1039/d3ay01488f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
Abstract
Viscosity, an essential parameter of the cellular microenvironment, has the ability to indicate the condition of living cells. It is closely linked to numerous diseases like Alzheimer's disease, diabetes, and cardiovascular disorders. Therefore, it is necessary to design tools to effectively monitor viscosity changes, which could provide promising avenues for therapeutic interventions in these diseases. Herein, we report a novel mitochondria-targeting fluorescent probe GX-VS which was suitable for the detection of viscosity changes in vivo and in vitro. The probe GX-VS had many advantages such as long emission wavelength (650 nm), large Stokes shift (105 nm), significant fluorescence enhancement (59-fold), high sensitivity, good biocompatibility and so on. Biological experiments showed that the probe could target mitochondria and detect viscosity alterations in HeLa cells. Moreover, it has been successfully utilized to monitor viscosity changes induced by lipopolysaccharides (LPS) in inflammatory zebrafishes and living mice, which further underscored the capacity of GX-VS to explore fluctuations in viscosity within living organisms.
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Affiliation(s)
- Xi Gong
- Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, P. R. China.
| | - Rui Guo
- Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, P. R. China.
| | - Xiaoya Li
- Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, P. R. China.
| | - Yingjie Yang
- Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, P. R. China.
| | - Weiying Lin
- Institute of Optical Materials and Chemical Biology, Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, Nanning, Guangxi 530004, P. R. China.
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5
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Mondal IC, Rawat P, Galkin M, Deka S, Karmakar A, Mondal P, Ghosh S. Julolidine-based small molecular probes for fluorescence imaging of RNA in live cells. Org Biomol Chem 2023; 21:7831-7840. [PMID: 37728395 DOI: 10.1039/d3ob01314f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
Intracellular RNA imaging with organic small molecular probes has been an intense topic, although the number of such reported dyes, particularly dyes with high quantum yields and long wavelength excitation/emission, is quite limited. The present work reports the design and synthesis of three cationic julolidine-azolium conjugates (OX-JLD, BTZ-JLD and SEZ-JLD) as turn-on fluorescent probes with appreciably high quantum yields and brightness upon interaction with RNA. A structure-efficiency relationship has been established for their potential for the interaction and imaging of intracellular RNA. Given their chemical structure, the free rotation between the donor and the acceptor gets restricted when the probes bind with RNA resulting in strong fluorescence emission towards a higher wavelength upon photoexcitation. A detailed investigation revealed that the photophysical properties and the optical responses of two probes, viz. BTZ-JLD and SEZ-JLD, towards RNA are very promising and qualify them to be suitable candidates for biological studies, particularly for cellular imaging applications. The probes allow imaging of intracellular RNA with prominent staining of nucleoli in live cells under a range of physiological conditions. The results of the cellular digest test established the appreciable RNA selectivity of BTZ-JLD and SEZ-JLD inside the cellular environment. Moreover, a comparison between the relative intensity profile of SEZ-JLD before and after the RNA-digestion test inside the cellular environment indicated that the interference of cellular viscosity in fluorescence enhancement is insignificant, and hence, SEZ-JLD can be used as a cell membrane permeable cationic molecular probe for deep-red imaging of intracellular RNA with a good degree of selectivity.
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Affiliation(s)
- Iswar Chandra Mondal
- School of Chemical Sciences, Indian Institute of Technology Mandi, H.P-175005, India
| | - Priya Rawat
- School of Biosciences and Bioengineering, Indian Institute of Technology Mandi, H.P-175005, India
| | - Maksym Galkin
- Laboratory of Chemical Biology, The Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague 6 16610, Czech Republic
| | - Snata Deka
- School of Chemical Sciences, Indian Institute of Technology Mandi, H.P-175005, India
| | - Anirban Karmakar
- Centro de Química Estrutural, Instituto Superior Técnico, Avenida Rovisco Pais, 1049-001 Lisboa, Portugal
| | - Prosenjit Mondal
- School of Biosciences and Bioengineering, Indian Institute of Technology Mandi, H.P-175005, India
| | - Subrata Ghosh
- School of Chemical Sciences, Indian Institute of Technology Mandi, H.P-175005, India
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6
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Wojtczak BA, Bednarczyk M, Sikorski PJ, Wojtczak A, Surynt P, Kowalska J, Jemielity J. Synthesis and Evaluation of Diguanosine Cap Analogs Modified at the C8-Position by Suzuki-Miyaura Cross-Coupling: Discovery of 7-Methylguanosine-Based Molecular Rotors. J Org Chem 2023. [PMID: 37209102 DOI: 10.1021/acs.joc.3c00126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Chemical modifications of the mRNA cap structure can enhance the stability, translational properties, and half-life of mRNAs, thereby altering the therapeutic properties of synthetic mRNA. However, cap structure modification is challenging because of the instability of the 5'-5'-triphosphate bridge and N7-methylguanosine. The Suzuki-Miyaura cross-coupling reaction between boronic acid and halogen compound is a mild, convenient, and potentially applicable approach for modifying biomolecules. Herein, we describe two methods to synthesize C8-modified cap structures using the Suzuki-Miyaura cross-coupling reaction. Both methods employed phosphorimidazolide chemistry to form the 5',5'-triphosphate bridge. However, in the first method, the introduction of the modification via the Suzuki-Miyaura cross-coupling reaction at the C8 position occurs postsynthetically, at the dinucleotide level, whereas in the second method, the modification was introduced at the level of the nucleoside 5'-monophosphate, and later, the triphosphate bridge was formed. Both methods were successfully applied to incorporate six different groups (methyl, cyclopropyl, phenyl, 4-dimethylaminophenyl, 4-cyanophenyl, and 1-pyrene) into either the m7G or G moieties of the cap structure. Aromatic substituents at the C8-position of guanosine form a push-pull system that exhibits environment-sensitive fluorescence. We demonstrated that this phenomenon can be harnessed to study the interaction with cap-binding proteins, e.g., eIF4E, DcpS, Nudt16, and snurportin.
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Affiliation(s)
- Blazej A Wojtczak
- Centre of New Technologies, University of Warsaw; S. Banacha 2c, 02-097 Warsaw, Poland
| | - Marcelina Bednarczyk
- Centre of New Technologies, University of Warsaw; S. Banacha 2c, 02-097 Warsaw, Poland
- Faculty of Physics, University of Warsaw; L. Pasteura 5, 02-093, Warsaw, Poland
| | - Pawel J Sikorski
- Centre of New Technologies, University of Warsaw; S. Banacha 2c, 02-097 Warsaw, Poland
| | - Anna Wojtczak
- Faculty of Physics, University of Warsaw; L. Pasteura 5, 02-093, Warsaw, Poland
| | - Piotr Surynt
- Centre of New Technologies, University of Warsaw; S. Banacha 2c, 02-097 Warsaw, Poland
- Faculty of Physics, University of Warsaw; L. Pasteura 5, 02-093, Warsaw, Poland
| | - Joanna Kowalska
- Faculty of Physics, University of Warsaw; L. Pasteura 5, 02-093, Warsaw, Poland
| | - Jacek Jemielity
- Centre of New Technologies, University of Warsaw; S. Banacha 2c, 02-097 Warsaw, Poland
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7
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Yang R, Zhu T, Xu J, Zhao Y, Kuang Y, Sun M, Chen Y, He W, Wang Z, Jiang T, Zhang H, Wei M. Organic Fluorescent Probes for Monitoring Micro-Environments in Living Cells and Tissues. Molecules 2023; 28:molecules28083455. [PMID: 37110689 PMCID: PMC10147038 DOI: 10.3390/molecules28083455] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 04/07/2023] [Accepted: 04/10/2023] [Indexed: 04/29/2023] Open
Abstract
As a vital parameter in living cells and tissues, the micro-environment is crucial for the living organisms. Significantly, organelles require proper micro-environment to achieve normal physiological processes, and the micro-environment in organelles can reflect the state of organelles in living cells. Moreover, some abnormal micro-environments in organelles are closely related to organelle dysfunction and disease development. So, visualizing and monitoring the variation of micro-environments in organelles is helpful for physiologists and pathologists to study the mechanisms of the relative diseases. Recently, a large variety of fluorescent probes was developed to study the micro-environments in living cells and tissues. However, the systematic and comprehensive reviews on the organelle micro-environment in living cells and tissues have rarely been published, which may hinder the research progress in the field of organic fluorescent probes. In this review, we will summarize the organic fluorescent probes for monitoring the microenvironment, such as viscosity, pH values, polarity, and temperature. Further, diverse organelles (mitochondria, lysosome, endoplasmic reticulum, cell membrane) about microenvironments will be displayed. In this process, the fluorescent probes about the "off-on" and ratiometric category (the diverse fluorescence emission) will be discussed. Moreover, the molecular designing, chemical synthesis, fluorescent mechanism, and the bio-applications of these organic fluorescent probes in cells and tissues will also be discussed. Significantly, the merits and defects of current microenvironment-sensitive probes are outlined and discussed, and the development tendency and challenges for this kind of probe are presented. In brief, this review mainly summarizes some typical examples and highlights the progress of organic fluorescent probes for monitoring micro-environments in living cells and tissues in recent research. We anticipate that this review will deepen the understanding of microenvironment in cells and tissues and facilitate the studies and development of physiology and pathology.
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Affiliation(s)
- Rui Yang
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Tao Zhu
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Jingyang Xu
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Yuang Zhao
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Yawei Kuang
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Mengni Sun
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Yuqi Chen
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Wei He
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Zixing Wang
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Tingwang Jiang
- Department of Key Laboratory, The Second People's Hospital of Changshu, the Affiliated Changshu Hospital of Nantong University, Changshu 215500, China
| | - Huiguo Zhang
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
| | - Mengmeng Wei
- School of Electronics and Information Engineering, Changshu Institute of Technology, Changshu 215500, China
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8
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Kumagai T, Kinoshita B, Hirashima S, Sugiyama H, Park S. Thiophene-Extended Fluorescent Nucleosides as Molecular Rotor-Type Fluorogenic Sensors for Biomolecular Interactions. ACS Sens 2023; 8:923-932. [PMID: 36740828 DOI: 10.1021/acssensors.2c02617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Fluorescent molecular rotors are versatile tools for the investigation of biomolecular interactions and the monitoring of microenvironmental changes in biological systems. They can transform invisible information into a fluorescence signal as a straightforward response. Their utility is synergistically amplified when they are merged with biomolecules. Despite the tremendous significance and superior programmability of nucleic acids, there are very few reports on the development of molecular rotor-type isomorphic nucleosides. Here, we report the synthesis and characterization of a highly emissive molecular rotor-containing thymine nucleoside (ThexT) and its 2'-O-methyluridine analogue (2'-OMe-ThexU) as fluorogenic microenvironment-sensitive sensors that emit vivid fluorescence via an interaction with the target proteins. ThexT and 2'-OMe-ThexU may potentially serve as robust probes for a broad range of applications, such as fluorescence mapping, to monitor viscosity changes and specific protein-binding interactions in biological systems.
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Affiliation(s)
- Tomotaka Kumagai
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Ban Kinoshita
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Shingo Hirashima
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan.,Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto 606-8501, Japan
| | - Soyoung Park
- Immunology Frontier Research Center, Osaka University, Yamadaoka, Suita, Osaka 565-0871, Japan
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9
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Acar Y, Kandemir BB, Bayraç AT. A label-free G-quadruplex and ThT mediated fluorescent sensor for detection of Cu2+ from water samples. TALANTA OPEN 2022. [DOI: 10.1016/j.talo.2022.100159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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10
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Briole A, Abou B. Molecular rotors in haemoglobin and bovine serum albumin proteins. J R Soc Interface 2022; 19:20220709. [PMID: 36448286 PMCID: PMC9709517 DOI: 10.1098/rsif.2022.0709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 11/08/2022] [Indexed: 12/02/2022] Open
Abstract
Molecular rotors are fluorescent viscosity probes and their response in simple fluids is known to be a Förster-Hoffman power law, allowing the viscosity of the medium to be quantified by its fluorescence intensity. They are attractive probes in biological media, usually consisting of proteins, but how does a molecular rotor behave in a protein solution? The response of the DASPI molecular rotor is compared in two globular protein solutions of similar size, haemoglobin (Hb) and bovine serum albumin, one absorbent, the other not. In absorbent Hb, a model validated by experiments in triangular geometry allows one to correct the absorbing effect and to compare the rotor response in both proteins. With concomitant microrheology measurements, we investigate the relation between the DASPI fluorescence intensity and solution viscosity. In protein solutions, we show that viscosity is no longer the parameter determining the rotor response in contrast to simple fluids. Varying the viscosity by concentration or temperature is not equivalent, and the Förster-Hoffmann power laws do not apply when the solution concentration varies. We show that the concentration regime of the protein solution, semi-dilute or concentrated, determines the sensitivity of the rotor to its environment.
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Affiliation(s)
- Alice Briole
- Matière et Systèmes Complexes, UMR7057 CNRS—Université Paris Cité, 75205 Paris, France
| | - Bérengère Abou
- Matière et Systèmes Complexes, UMR7057 CNRS—Université Paris Cité, 75205 Paris, France
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11
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Yue N, Fu H, Chen Y, Gao X, Dai J, Cui M. Rational design of molecular rotor-based fluorescent probes with Bi-aromatic rings for efficient in vivo detection of amyloid-β plaques in Alzheimer's disease. Eur J Med Chem 2022; 243:114715. [DOI: 10.1016/j.ejmech.2022.114715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 08/17/2022] [Accepted: 08/23/2022] [Indexed: 11/28/2022]
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12
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Dziuba D. Environmentally sensitive fluorescent nucleoside analogues as probes for nucleic acid - protein interactions: molecular design and biosensing applications. Methods Appl Fluoresc 2022; 10. [PMID: 35738250 DOI: 10.1088/2050-6120/ac7bd8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 06/23/2022] [Indexed: 11/12/2022]
Abstract
Fluorescent nucleoside analogues (FNAs) are indispensable in studying the interactions of nucleic acids with nucleic acid-binding proteins. By replacing one of the poorly emissive natural nucleosides, FNAs enable real-time optical monitoring of the binding interactions in solutions, under physiologically relevant conditions, with high sensitivity. Besides that, FNAs are widely used to probe conformational dynamics of biomolecular complexes using time-resolved fluorescence methods. Because of that, FNAs are tools of high utility for fundamental biological research, with potential applications in molecular diagnostics and drug discovery. Here I review the structural and physical factors that can be used for the conversion of the molecular binding events into a detectable fluorescence output. Typical environmentally sensitive FNAs, their properties and applications, and future challenges in the field are discussed.
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Affiliation(s)
- Dmytro Dziuba
- Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, Illkirch-Graffenstaden, Grand Est, 67401, FRANCE
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13
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Bachollet SPJT, Shpinov Y, Broch F, Benaissa H, Gautier A, Pietrancosta N, Mallet JM, Dumat B. An expanded palette of fluorogenic HaloTag probes with enhanced contrast for targeted cellular imaging. Org Biomol Chem 2022; 20:3619-3628. [PMID: 35420083 DOI: 10.1039/d1ob02394b] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We report the development of HaloTag fluorogens based on dipolar flexible molecular rotor structures. By modulating the electron donating and withdrawing groups, we have tuned the absorption and emission wavelengths to design a palette of fluorogens with emissions spanning the green to red range, opening new possibilities for multicolor imaging. The probes were studied in glycerol and in the presence of HaloTag and exhibited good fluorogenic properties thanks to a viscosity-sensitive emission. In live-cell confocal imaging, the fluorogens yielded only a very low non-specific signal that enabled wash-free targeted imaging of intracellular organelles and proteins with good contrast. Combining experimental studies and theoretical investigation of the protein/fluorogen complexes by molecular dynamics, these results offer new insight into the design of molecular rotor-based fluorogenic HaloTag probes in order to improve reaction rates and the imaging contrast.
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Affiliation(s)
- Sylvestre P J T Bachollet
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Yuriy Shpinov
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Fanny Broch
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Hela Benaissa
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Arnaud Gautier
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France. .,Institut Universitaire de France (IUF), 1 rue Descartes, 75005 Paris, France
| | - Nicolas Pietrancosta
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France. .,Neuroscience Paris Seine - Institut de Biologie Paris Seine (NPS - IBPS) INSERM, CNRS, Sorbonne Université, Paris, France
| | - Jean-Maurice Mallet
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
| | - Blaise Dumat
- Laboratoire des biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.
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14
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Singh D, Rajput D, Kanvah S. Fluorescent probes for targeting endoplasmic reticulum: design strategies and their applications. Chem Commun (Camb) 2022; 58:2413-2429. [PMID: 35089303 DOI: 10.1039/d1cc06944f] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Advances in developing organic fluorescent probes and fluorescence imaging techniques have enhanced our understanding of cell biology. The endoplasmic reticulum (ER) is a dynamic structure that plays a crucial role in protein synthesis, post-translational modifications, and lipid metabolism. The malfunction of ER contributes to several physiological and pathological conditions. Therefore, the investigations on the imaging and role of ER have attracted a lot of attention. Due to their simplicity, synthetic tunability, photostability, high quantum yields, easier cellular uptake, and lower cytotoxicity, organic fluorophores offer invaluable tools for the precision targeting of various cellular organelles and probe ER dynamics. The precision staining is made possible by incorporating specific functional groups having preferential and local organelle biomolecular interactions. For instance, functional moieties such as methyl sulfonamide, sulfonylurea, and pentafluorophenyl assist in ER targeting and thus have become essential tools to probe a deeper understanding of their dynamics. Furthermore, dual-function fluorescent probes that simultaneously image ER and detect specific physiological parameters or biological analytes were achieved by introducing special recognition or chemically reactive sites. This article attempts to comprehensively capture various design strategies currently employed by researchers utilizing small organic molecules to target the ER and detect specific analytes.
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Affiliation(s)
- Deepmala Singh
- Department of Chemistry, Indian Institute of Technology, Gandhinagar Palaj, Gandhinagar, Gujarat-382055, India.
| | - Deeksha Rajput
- Department of Chemistry, Indian Institute of Technology, Gandhinagar Palaj, Gandhinagar, Gujarat-382055, India.
| | - Sriram Kanvah
- Department of Chemistry, Indian Institute of Technology, Gandhinagar Palaj, Gandhinagar, Gujarat-382055, India.
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15
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Minadakis MP, Mavreas K, Neofytos DD, Paschou M, Kogkaki A, Athanasiou V, Mamais M, Veclani D, Iatrou H, Venturini A, Chrysina ED, Papazafiri P, Gimisis T. A glucose-based molecular rotor inhibitor of glycogen phosphorylase as a probe of cellular enzymatic function. Org Biomol Chem 2022; 20:2407-2423. [DOI: 10.1039/d1ob02211c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Molecular rotors belong to a family of fluorescent compounds characterized as molecular switches, where a fluorescence on/off signal signifies a change in the molecule’s microenvironment. Herein, the successful synthesis and...
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16
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Payne DT, Labuta J, Futera Z, Březina V, Hanyková L, Chahal MK, Hill JP. Molecular rotor based on an oxidized resorcinarene. Org Chem Front 2022. [DOI: 10.1039/d1qo01479j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Rate of rotation of substituents in a molecular single stator-double rotor based on an oxidized resorcinarene with unsaturated hemiquinonoid groups at its meso positions (i.e., a fuchsonarene) has been controlled according to solvent polarity and acidity.
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Affiliation(s)
- Daniel T. Payne
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan
- International Center for Young Scientists, National Institute for Materials Science, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan
| | - Jan Labuta
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan
| | - Zdeněk Futera
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, České Budějovice 370 05, Czech Republic
| | - Václav Březina
- Faculty of Mathematics and Physics, Charles University, V Holešovičkách 2, 180 00 Prague 8, Czech Republic
| | - Lenka Hanyková
- Faculty of Mathematics and Physics, Charles University, V Holešovičkách 2, 180 00 Prague 8, Czech Republic
| | - Mandeep K. Chahal
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan
| | - Jonathan P. Hill
- International Center for Materials Nanoarchitectonics, National Institute for Materials Science, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan
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17
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Zhang J, Rakhimbekova A, Duan X, Yin Q, Foss CA, Fan Y, Xu Y, Li X, Cai X, Kutil Z, Wang P, Yang Z, Zhang N, Pomper MG, Wang Y, Bařinka C, Yang X. A prostate-specific membrane antigen activated molecular rotor for real-time fluorescence imaging. Nat Commun 2021; 12:5460. [PMID: 34526506 PMCID: PMC8443597 DOI: 10.1038/s41467-021-25746-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Accepted: 08/25/2021] [Indexed: 12/03/2022] Open
Abstract
Surgery is an efficient way to treat localized prostate cancer (PCa), however, it is challenging to demarcate rapidly and accurately the tumor boundary intraoperatively, as existing tumor detection methods are seldom performed in real-time. To overcome those limitations, we develop a fluorescent molecular rotor that specifically targets the prostate-specific membrane antigen (PSMA), an established marker for PCa. The probes have picomolar affinity (IC50 = 63-118 pM) for PSMA and generate virtually instantaneous onset of robust fluorescent signal proportional to the concentration of the PSMA-probe complex. In vitro and ex vivo experiments using PCa cell lines and clinical samples, respectively, indicate the utility of the probe for biomedical applications, including real-time monitoring of endocytosis and tumor staging. Experiments performed in a PCa xenograft model reveal suitability of the probe for imaging applications in vivo.
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Affiliation(s)
- Jingming Zhang
- Department of Nuclear Medicine, Peking University First Hospital, 100034, Beijing, China
| | - Anastasia Rakhimbekova
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 25250, Vestec, Czech Republic
| | - Xiaojiang Duan
- Department of Nuclear Medicine, Peking University First Hospital, 100034, Beijing, China
| | - Qingqing Yin
- State Key Laboratory of Natural and Biomimetic Drugs, Peking University, 100191, Beijing, China
| | - Catherine A Foss
- Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
| | - Yan Fan
- Department of Nuclear Medicine, Peking University First Hospital, 100034, Beijing, China
| | - Yangyang Xu
- Department of Urology, Peking University First Hospital, 100034, Beijing, China
- The Institute of Urology, Peking University, 100034, Beijing, China
- National Urological Cancer Center, 100034, Beijing, China
- Beijing Key Laboratory of Urogenital Diseases (Male) Molecular Diagnosis and Treatment Center, 10034, Beijing, China
| | - Xuesong Li
- Department of Urology, Peking University First Hospital, 100034, Beijing, China
- The Institute of Urology, Peking University, 100034, Beijing, China
- National Urological Cancer Center, 100034, Beijing, China
- Beijing Key Laboratory of Urogenital Diseases (Male) Molecular Diagnosis and Treatment Center, 10034, Beijing, China
| | - Xuekang Cai
- Department of Nuclear Medicine, Peking University First Hospital, 100034, Beijing, China
| | - Zsofia Kutil
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 25250, Vestec, Czech Republic
| | - Pengyuan Wang
- Department of General Surgery, Peking University First Hospital, 100034, Beijing, China
| | - Zhi Yang
- Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/ Beijing), Department of Nuclear Medicine, Peking University Cancer Hospital & Institute, 100142, Beijing, China
| | - Ning Zhang
- Translational Cancer Research Center, Peking University First Hospital, 100034, Beijing, China
| | - Martin G Pomper
- Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA
| | - Yiguang Wang
- State Key Laboratory of Natural and Biomimetic Drugs, Peking University, 100191, Beijing, China.
| | - Cyril Bařinka
- Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Prumyslova 595, 25250, Vestec, Czech Republic.
| | - Xing Yang
- Department of Nuclear Medicine, Peking University First Hospital, 100034, Beijing, China.
- Institute of Medical Technology, Peking University Health Science Center, 100191, Beijing, China.
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18
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Confinement fluorescence effect (CFE): Lighting up life by enhancing the absorbed photon energy utilization efficiency of fluorophores. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.213979] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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19
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Kartha KK, Takai A, Futera Z, Labuta J, Takeuchi M. Dynamics of Meso–Chiral Interconversion in a Butterfly‐Shape Overcrowded Alkene Rotor Tunable by Solvent Properties. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102719] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Kalathil K. Kartha
- Molecular Design and Function Group National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan
| | - Atsuro Takai
- Molecular Design and Function Group National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan
| | - Zdeněk Futera
- University of South Bohemia Faculty of Science Branišovská 1760 370 05 České Budějovice Czech Republic
| | - Jan Labuta
- World Premier International Center for Materials Nanoarchitectonics (WPI-MANA) National Institute for Materials Science (NIMS) 1-1 Namiki Tsukuba Ibaraki 305-0044 Japan
| | - Masayuki Takeuchi
- Molecular Design and Function Group National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan
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20
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Kartha KK, Takai A, Futera Z, Labuta J, Takeuchi M. Dynamics of Meso-Chiral Interconversion in a Butterfly-Shape Overcrowded Alkene Rotor Tunable by Solvent Properties. Angew Chem Int Ed Engl 2021; 60:16466-16471. [PMID: 33905168 DOI: 10.1002/anie.202102719] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 04/15/2021] [Indexed: 11/10/2022]
Abstract
Elucidation of dynamics of molecular rotational motion is an essential part and challenging area of research. We demonstrate reversible diastereomeric interconversion of a molecular rotor composed of overcrowded butterfly-shape alkene (FDF). Its inherent dual rotatory motion (two rotors, one stator) with interconversion between two diastereomers, chiral trans-FDF and meso cis-FDF forms, has been examined in detail upon varying temperatures and solvents. The free energy profile of 180° revolution of one rotor part has a bimodal shape with unevenly positioned maxima (transition states). FDF in aromatic solvents adopts preferentially meso cis-conformation, while in non-aromatic solvents a chiral trans-conformation is more abundant owing to the solvent interactions with peripheral hexyl chains (solvophobic effect). Moderate correlations between the trans-FDF/cis-FDF ratio and solvent parameters, such as refractive index, polarizability, and viscosity were found.
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Affiliation(s)
- Kalathil K Kartha
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, Ibaraki, 305-0047, Japan
| | - Atsuro Takai
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, Ibaraki, 305-0047, Japan
| | - Zdeněk Futera
- University of South Bohemia, Faculty of Science, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| | - Jan Labuta
- World Premier International Center for Materials Nanoarchitectonics (WPI-MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki, 305-0044, Japan
| | - Masayuki Takeuchi
- Molecular Design and Function Group, National Institute for Materials Science (NIMS), 1-2-1 Sengen, Tsukuba, Ibaraki, 305-0047, Japan
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21
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Chee SMQ, Wongsantichon J, Yi LS, Sana B, Frosi Y, Robinson RC, Ghadessy FJ. Functional display of bioactive peptides on the vGFP scaffold. Sci Rep 2021; 11:10127. [PMID: 33980885 PMCID: PMC8115314 DOI: 10.1038/s41598-021-89421-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 04/27/2021] [Indexed: 11/24/2022] Open
Abstract
Grafting bioactive peptides into recipient protein scaffolds can often increase their activities by conferring enhanced stability and cellular longevity. Here, we describe use of vGFP as a novel scaffold to display peptides. vGFP comprises GFP fused to a bound high affinity Enhancer nanobody that potentiates its fluorescence. We show that peptides inserted into the linker region between GFP and the Enhancer are correctly displayed for on-target interaction, both in vitro and in live cells by pull-down, measurement of target inhibition and imaging analyses. This is further confirmed by structural studies highlighting the optimal display of a vGFP-displayed peptide bound to Mdm2, the key negative regulator of p53 that is often overexpressed in cancer. We also demonstrate a potential biosensing application of the vGFP scaffold by showing target-dependent modulation of intrinsic fluorescence. vGFP is relatively thermostable, well-expressed and inherently fluorescent. These properties make it a useful scaffold to add to the existing tool box for displaying peptides that can disrupt clinically relevant protein–protein interactions.
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Affiliation(s)
- Sharon Min Qi Chee
- p53 Laboratory, A*STAR, 8A Biomedical Grove, Singapore, 138648, Singapore
| | - Jantana Wongsantichon
- Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand
| | - Lau Sze Yi
- p53 Laboratory, A*STAR, 8A Biomedical Grove, Singapore, 138648, Singapore
| | - Barindra Sana
- p53 Laboratory, A*STAR, 8A Biomedical Grove, Singapore, 138648, Singapore
| | - Yuri Frosi
- p53 Laboratory, A*STAR, 8A Biomedical Grove, Singapore, 138648, Singapore
| | - Robert C Robinson
- School of Biomolecular Science and Engineering (BSE), Vidyasirimedhi Institute of Science and Technology (VISTEC), Rayong, 21210, Thailand.,Research Institute for Interdisciplinary Science, Okayama University, Okayama, 700-8530, Japan
| | - Farid J Ghadessy
- p53 Laboratory, A*STAR, 8A Biomedical Grove, Singapore, 138648, Singapore.
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22
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Sun M, Wang T, Yang X, Yu H, Wang S, Huang D. Facile mitochondria localized fluorescent probe for viscosity detection in living cells. Talanta 2021; 225:121996. [PMID: 33592743 DOI: 10.1016/j.talanta.2020.121996] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 12/03/2020] [Accepted: 12/07/2020] [Indexed: 12/11/2022]
Abstract
Fluorescent probes act as a powerful tool to understand the function of intracellular viscosity, which are closely associated with many functional disorders and diseases. Herein we report a boron-dipyrromethene (4,4-difluoro-4-borata-3a,4a-diaza-s-indacene, BODIPY) group based new fluorescent probe (BV-1), which was synthesized facilely by a one-step Knoevenagel-type condensation reaction, to detect viscosity in living cells with high selectivity and sensitivity. DFT calculation demonstrated that the unsaturated moiety at the meso-position of BODIPY suppressed the fluorescence via twisted intramolecular charge transfer (TICT) mechanism in low viscosity media. By restricting the rotation of the molecular rotor, the fluorescence would be enhanced significantly with redshift in emission wavelength in high viscosity conditions. The fluorescence intensity ratio (log (I/I0)) at 570 nm showed a good linearity (R2 = 0.991) with the viscosity (log η) in the range of 2-868 cP. And the limit of detection (LOD) and limit of quantification (LOQ) for viscosity were calculated to be 0.16 cP and 0.54 cP, respectively. BV-1 was demonstrated to be mitochondria localized with low cytotoxicity. Utilizing the new probe BV-1, the changes in mitochondrial viscosity caused by monensin or nystatin have been monitored successfully in real time. This work will provide new efficient ways for the development of viscosity probes, which are expected to be used for the study of intracellular viscosity properties and functions.
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Affiliation(s)
- Mingtai Sun
- Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, 525000, People's Republic of China; Department of Food Science and Technology, National University of Singapore, 3 Science Drive 2, 117542, Singapore
| | - Tian Wang
- Department of Food Science and Technology, National University of Singapore, 3 Science Drive 2, 117542, Singapore
| | - Xin Yang
- Department of Food Science and Technology, National University of Singapore, 3 Science Drive 2, 117542, Singapore
| | - Huan Yu
- School of Pharmacy, Anhui Medical University, Hefei, 230032, China
| | - Suhua Wang
- Guangdong Provincial Key Laboratory of Petrochemical Pollution Processes and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming, 525000, People's Republic of China.
| | - Dejian Huang
- Department of Food Science and Technology, National University of Singapore, 3 Science Drive 2, 117542, Singapore.
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23
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Feng L, Xie Y, Au-Yeung SK, Hailu HB, Liu Z, Chen Q, Zhang J, Pang Q, Yao X, Yang M, Zhang L, Sun H. A fluorescent molecular rotor probe for tracking plasma membranes and exosomes in living cells. Chem Commun (Camb) 2021; 56:8480-8483. [PMID: 32588854 DOI: 10.1039/d0cc03069d] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A rotor-based probe MRMP-1 was designed and synthesized. MRMP-1 can bind to plasma membranes very quickly and stably with remarkable fluorescence enhancement. It can be used to monitor the dynamic changes in cell membranes in real-time under stimuli conditions. Importantly, MRMP-1 is the first rotor-based fluorescent sensor to label exosomes in living cells.
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Affiliation(s)
- Ling Feng
- Cancer and Aging Research Institution, School of Life Science, Shandong University of Technology, China and Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
| | - Yusheng Xie
- Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
| | - Sung King Au-Yeung
- Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China and Department of Biomedical Sciences, College of Veterinary Medicine and Life Sciences, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China.
| | - Hagos Birhanu Hailu
- Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China and Department of Biomedical Sciences, College of Veterinary Medicine and Life Sciences, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China.
| | - Zhiyang Liu
- Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
| | - Qingxin Chen
- Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
| | - Jie Zhang
- Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
| | - Qiuxiang Pang
- Cancer and Aging Research Institution, School of Life Science, Shandong University of Technology, China
| | - Xi Yao
- Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China and Department of Biomedical Sciences, College of Veterinary Medicine and Life Sciences, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China.
| | - Mengsu Yang
- Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China and Department of Biomedical Sciences, College of Veterinary Medicine and Life Sciences, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China.
| | - Liang Zhang
- Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China and Department of Biomedical Sciences, College of Veterinary Medicine and Life Sciences, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China.
| | - Hongyan Sun
- Department of Chemistry and COSDAF (Centre of Super-Diamond and Advanced Films), City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong, China. and Key Laboratory of Biochip Technology, Biotech and Health Centre, Shenzhen Research Institute of City University of Hong Kong, Shenzhen, 518057, P. R. China
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24
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Detection of water content in alcohol solvents over Al3+ induced colorimetric and NIR-fluorescent sensor based on isophorone-phenylamine. Microchem J 2021. [DOI: 10.1016/j.microc.2020.105677] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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25
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Zhang S, Greening DW, Hong Y. Recent advances in bioanalytical methods to measure proteome stability in cells. Analyst 2021; 146:2097-2109. [DOI: 10.1039/d0an01547d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This review summarizes recent bioanalytical methods for measuring and profiling protein stability in cells on a proteome-wide scale, which can provide insights for proteostasis and associated diseases.
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Affiliation(s)
- Shouxiang Zhang
- Department of Chemistry and Physics
- La Trobe Institute for Molecular Science
- La Trobe University
- Melbourne
- Australia
| | - David W. Greening
- Molecular Proteomics
- Baker Heart and Diabetes Institute
- Melbourne
- Australia
- Department of Biochemistry and Genetics
| | - Yuning Hong
- Department of Chemistry and Physics
- La Trobe Institute for Molecular Science
- La Trobe University
- Melbourne
- Australia
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26
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Ye S, Zhang H, Fei J, Wolstenholme CH, Zhang X. A General Strategy to Control Viscosity Sensitivity of Molecular Rotor-Based Fluorophores. Angew Chem Int Ed Engl 2020; 60:1339-1346. [PMID: 32991766 DOI: 10.1002/anie.202011108] [Citation(s) in RCA: 88] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Indexed: 12/13/2022]
Abstract
Molecular rotor-based fluorophores (RBFs) have been widely used in many fields. However, the lack of control of their viscosity sensitivity limits their application. Herein, this problem is resolved by chemically installing extended π-rich alternating carbon-carbon linkages between the rotational electron donors and acceptors of RBFs. The data reveal that the length of the linkage strongly influences the viscosity sensitivity, likely resulting from varying height of the energy barriers between the fluorescent planar and the dark twisted configurations. Three RBF derivatives that span a wide range of viscosity sensitivities were designed. These RBFs demonstrated, through a dual-color imaging strategy, that they can differentiate misfolded protein oligomers and insoluble aggregates, both in test tubes and live cells. Beyond RBFs, it is envisioned that this chemical mechanism might be generally applicable to a wide range of photoisomerizable and aggregation-induced emission fluorophores.
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Affiliation(s)
- Songtao Ye
- Department of Chemistry, Pennsylvania State University, University Park, PA, 16802, USA
| | - Han Zhang
- Department of Chemistry, Pennsylvania State University, University Park, PA, 16802, USA
| | - Jinyu Fei
- Department of Chemistry, Pennsylvania State University, University Park, PA, 16802, USA
| | | | - Xin Zhang
- Department of Chemistry, Pennsylvania State University, University Park, PA, 16802, USA.,Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, 16802, USA
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27
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Ye S, Zhang H, Fei J, Wolstenholme CH, Zhang X. A General Strategy to Control Viscosity Sensitivity of Molecular Rotor‐Based Fluorophores. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202011108] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Songtao Ye
- Department of Chemistry Pennsylvania State University University Park PA 16802 USA
| | - Han Zhang
- Department of Chemistry Pennsylvania State University University Park PA 16802 USA
| | - Jinyu Fei
- Department of Chemistry Pennsylvania State University University Park PA 16802 USA
| | | | - Xin Zhang
- Department of Chemistry Pennsylvania State University University Park PA 16802 USA
- Department of Biochemistry and Molecular Biology Pennsylvania State University University Park PA 16802 USA
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28
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Wolstenholme CH, Hu H, Ye S, Funk BE, Jain D, Hsiung CH, Ning G, Liu Y, Li X, Zhang X. AggFluor: Fluorogenic Toolbox Enables Direct Visualization of the Multi-Step Protein Aggregation Process in Live Cells. J Am Chem Soc 2020; 142:17515-17523. [PMID: 32915553 DOI: 10.1021/jacs.0c07245] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Aberrantly processed or mutant proteins misfold and assemble into a variety of soluble oligomers and insoluble aggregates, a process that is associated with an increasing number of diseases that are not curable or manageable. Herein, we present a chemical toolbox, AggFluor, that allows for live cell imaging and differentiation of complex aggregated conformations in live cells. Based on the chromophore core of green fluorescent proteins, AggFluor is comprised of a series of molecular rotor fluorophores that span a wide range of viscosity sensitivity. As a result, these compounds exhibit differential turn-on fluorescence when incorporated in either soluble oligomers or insoluble aggregates. This feature allows us to develop, for the first time, a dual-color imaging strategy to distinguish unfolded protein oligomers from insoluble aggregates in live cells. Furthermore, we have demonstrated how small molecule proteostasis regulators can drive formation and disassembly of protein aggregates in both conformational states. In summary, AggFluor is the first set of rationally designed molecular rotor fluorophores that evenly cover a wide range of viscosity sensitivities. This set of fluorescent probes not only change the status quo of current imaging methods to visualize protein aggregation in live cells but also can be generally applied to study other biological processes that involve local viscosity changes with temporal and spatial resolutions.
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29
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Qiu J, Hameau A, Shi X, Mignani S, Majoral JP, Caminade AM. Fluorescent Phosphorus Dendrimers: Towards Material and Biological Applications. Chempluschem 2020; 84:1070-1080. [PMID: 31943953 DOI: 10.1002/cplu.201900337] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 07/03/2019] [Indexed: 12/18/2022]
Abstract
Fluorescent derivatives of phosphorhydrazone dendrimers are reviewed. Diverse types of fluorophores have been used, such as pyrene, naphthol, anthracene, dansyl, diketone, phthalocyanine, maleimide, julolidine, rhodamine, fluorescein, or fluorene derivatives. The fluorescent groups can be located either as terminal groups on the surface, at the core, linked to the core (off-center), or to the branches of the dendritic structure. After fundamental research on their synthesis, these compounds have been used in the fields of catalysis, nanomaterials, OLEDs, sensors and biology/nanomedicine, in particular for monitoring transfection, or for their anti-inflammatory or anti-cancer properties.
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Affiliation(s)
- Jieru Qiu
- Laboratoire de Chimie de Coordination (LCC), CNRS, 205 route de Narbonne, BP 44099, 31077, Toulouse Cedex 4, France.,LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France.,Key Laboratory of Science & Technology of Eco-Textile Ministry of Education College of Chemistry Chemical Engineering and Biotechnology, Donghua University, Shanghai, 201620, P. R. China
| | - Aurélien Hameau
- Laboratoire de Chimie de Coordination (LCC), CNRS, 205 route de Narbonne, BP 44099, 31077, Toulouse Cedex 4, France.,LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France
| | - Xiangyang Shi
- Key Laboratory of Science & Technology of Eco-Textile Ministry of Education College of Chemistry Chemical Engineering and Biotechnology, Donghua University, Shanghai, 201620, P. R. China
| | - Serge Mignani
- CNRS-UMR 860 Laboratoire de Chimie et de Biochimie Pharmacologique et de Toxicologie Université Paris Descartes, PRES Sorbonne-Paris Cité, 45 rue des Saints Pères, 75006, Paris, France.,CQM Centro de Quimica da Madeira, MMRG, Universidade da Madeira, Campus de Pentrada, 9020-105, Funchal, Portugal
| | - Jean-Pierre Majoral
- Laboratoire de Chimie de Coordination (LCC), CNRS, 205 route de Narbonne, BP 44099, 31077, Toulouse Cedex 4, France.,LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France
| | - Anne-Marie Caminade
- Laboratoire de Chimie de Coordination (LCC), CNRS, 205 route de Narbonne, BP 44099, 31077, Toulouse Cedex 4, France.,LCC-CNRS, Université de Toulouse, CNRS, Toulouse, France
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30
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Mamer SB, Page P, Murphy M, Wang J, Gallerne P, Ansari A, Imoukhuede PI. The Convergence of Cell-Based Surface Plasmon Resonance and Biomaterials: The Future of Quantifying Bio-molecular Interactions-A Review. Ann Biomed Eng 2020; 48:2078-2089. [PMID: 31811474 PMCID: PMC8637426 DOI: 10.1007/s10439-019-02429-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 11/29/2019] [Indexed: 12/20/2022]
Abstract
Cell biology is driven by complex networks of biomolecular interactions. Characterizing the kinetic and thermodynamic properties of these interactions is crucial to understanding their role in different physiological processes. Surface plasmon resonance (SPR)-based approaches have become a key tool in quantifying biomolecular interactions, however conventional approaches require isolating the interacting components from the cellular system. Cell-based SPR approaches have recently emerged, promising to enable precise measurements of biomolecular interactions within their normal biological context. Two major approaches have been developed, offering their own advantages and limitations. These approaches currently lack a systematic exploration of 'best practices' like those existing for traditional SPR experiments. Toward this end, we describe the two major approaches, and identify the experimental parameters that require exploration, and discuss the experimental considerations constraining the optimization of each. In particular, we discuss the requirements of future biomaterial development needed to advance the cell-based SPR technique.
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Affiliation(s)
- Spencer B Mamer
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | | | | | - Jiaojiao Wang
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Pierrick Gallerne
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Ecole Centrale de Lille, Villeneuve d'Ascq, Hauts-De-France, France
| | - Ali Ansari
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - P I Imoukhuede
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO, USA.
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31
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Liu X, Chi W, Qiao Q, Kokate SV, Cabrera EP, Xu Z, Liu X, Chang YT. Molecular Mechanism of Viscosity Sensitivity in BODIPY Rotors and Application to Motion-Based Fluorescent Sensors. ACS Sens 2020; 5:731-739. [PMID: 32072803 DOI: 10.1021/acssensors.9b01951] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Viscosity in the intracellular microenvironment shows a significant difference in various organelles and is closely related to cellular processes. Such microviscosity in live cells is often mapped and quantified with fluorescent molecular rotors. To enable the rational design of viscosity-sensitive molecular rotors, it is critical to understand their working mechanisms. Herein, we systematically synthesized and investigated two sets of BODIPY-based molecular rotors to study the relationship between intramolecular motions and viscosity sensitivity. Through experimental and computational studies, two conformations (i.e., the planar and butterfly conformations) are found to commonly exist in BODIPY rotors. We demonstrate that the transformation energy barrier from the planar conformation to the butterfly conformation is strongly affected by the molecular structures of BODIPY rotors and plays a critical role in viscosity sensitivity. These findings enable rational structure modifications of BODIPY molecular rotors for highly effective protein detection and recognition.
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Affiliation(s)
- Xiao Liu
- Department of Chemistry, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
- Center for Self-assembly and Complexity, Institute for Basic Science (IBS), Pohang 37673, Republic of Korea
| | - Weijie Chi
- Fluorescence Research Group, Singapore University of Technology and Design, 8 Somapah Road, Singapore 487372, Singapore
| | - Qinglong Qiao
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Siddhant V. Kokate
- Departamento de Quimica DCNE, Campus Guanajuato, Universidad de Guanajuato, Guanajuato 36050, Mexico
| | - Eduardo Peña Cabrera
- Departamento de Quimica DCNE, Campus Guanajuato, Universidad de Guanajuato, Guanajuato 36050, Mexico
| | - Zhaochao Xu
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Xiaogang Liu
- Fluorescence Research Group, Singapore University of Technology and Design, 8 Somapah Road, Singapore 487372, Singapore
| | - Young-Tae Chang
- Department of Chemistry, Pohang University of Science and Technology, Pohang 37673, Republic of Korea
- Center for Self-assembly and Complexity, Institute for Basic Science (IBS), Pohang 37673, Republic of Korea
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32
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Wang LR, Chang D, Feng Y, He YM, Deng GJ, Fan QH. Highly Enantioselective Ruthenium-Catalyzed Cascade Double Reduction Strategy: Construction of Structurally Diverse Julolidines and Their Analogues. Org Lett 2020; 22:2251-2255. [DOI: 10.1021/acs.orglett.0c00444] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Li-Ren Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Application of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan 411105, P. R. China
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Dan Chang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Application of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan 411105, P. R. China
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Yu Feng
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Yan-Mei He
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Guo-Jun Deng
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Application of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan 411105, P. R. China
| | - Qing-Hua Fan
- Beijing National Laboratory for Molecular Sciences, CAS Key Laboratory of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
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33
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Seebald L, Madec AGE, Imperiali B. Deploying Fluorescent Nucleoside Analogues for High-Throughput Inhibitor Screening. Chembiochem 2020; 21:108-112. [PMID: 31709708 PMCID: PMC6980326 DOI: 10.1002/cbic.201900671] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2019] [Indexed: 12/27/2022]
Abstract
High-throughput small-molecule screening in drug discovery processes commonly rely on fluorescence-based methods including fluorescent polarization and fluorescence/Förster resonance energy transfer. These techniques use highly accessible instrumentation; however, they can suffer from high false-negative rates and background signals, or might involve complex schemes for the introduction of fluorophore pairs. Herein we present the synthesis and application of fluorescent nucleoside analogues as the foundation for directed approaches for competitive binding analyses. The general approach describes selective fluorescent environment-sensitive (ES) nucleoside analogues that are adaptable to diverse enzymes that act on nucleoside-based substrates. We demonstrate screening a set of uridine analogues and development of an assay for fragment-based lead discovery with the TcdB glycosyltransferase (GT), an enzyme associated with virulence in Clostridium difficile. The uridine-based probe used for this high-throughput screen has a KD value of 7.2 μm with the TcdB GT and shows a >30-fold increase in fluorescence intensity upon binding. The ES-based probe assay is benchmarked against two other screening approaches.
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Affiliation(s)
- Leah Seebald
- Department of Biology and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Amaël G E Madec
- Department of Biology and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Barbara Imperiali
- Department of Biology and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
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34
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Güixens-Gallardo P, Humpolickova J, Miclea SP, Pohl R, Kraus T, Jurkiewicz P, Hof M, Hocek M. Thiophene-linked tetramethylbodipy-labeled nucleotide for viscosity-sensitive oligonucleotide probes of hybridization and protein-DNA interactions. Org Biomol Chem 2020; 18:912-919. [PMID: 31919486 DOI: 10.1039/c9ob02634g] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Cytosine 2'-deoxyribonucleoside dCTBdp and its triphosphate (dCTBdpTP) bearing tetramethylated thiophene-bodipy fluorophore attached at position 5 were designed and synthesized. The green fluorescent nucleoside dCTBdp showed a perfect dependence of fluorescence lifetime on the viscosity. The modified triphosphate dCTBdpTP was substrate to several DNA polymerases and was used for in vitro enzymatic synthesis of labeled oligonucleotides (ONs) or DNA by primer extension. The labeled single-stranded ONs showed a significant decrease in mean fluorescence lifetime when hybridized to the complementary strand of DNA or RNA and were also sensitive to mismatches. The labeled dsDNA sensed protein binding (p53), which resulted in the increase of its fluorescence lifetime. The triphosphate dCTBdpTP was transported to live cells where its interactions could be detected by FLIM but it did not show incorporation to genomic DNA in cellulo.
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Affiliation(s)
- Pedro Güixens-Gallardo
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic. and Department of Organic Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, CZ-12843 Prague 2, Czech Republic
| | - Jana Humpolickova
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic.
| | - Sebastian Paul Miclea
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic.
| | - Radek Pohl
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic.
| | - Tomáš Kraus
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic.
| | - Piotr Jurkiewicz
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejskova 3, 18223 Prague 8, Czech Republic
| | - Martin Hof
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejskova 3, 18223 Prague 8, Czech Republic
| | - Michal Hocek
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nam. 2, CZ-16610 Prague 6, Czech Republic. and Department of Organic Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, CZ-12843 Prague 2, Czech Republic
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35
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Madeira do O J, Foralosso R, Yilmaz G, Mastrotto F, King PJS, Xerri RM, He Y, van der Walle CF, Fernandez-Trillo F, Laughton CA, Styliari I, Stolnik S, Mantovani G. Poly(triazolyl methacrylate) glycopolymers as potential targeted unimolecular nanocarriers. NANOSCALE 2019; 11:21155-21166. [PMID: 31663091 DOI: 10.1039/c9nr05836b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Synthetic glycopolymers are increasingly investigated as multivalent ligands for a range of biological and biomedical applications. This study indicates that glycopolymers with a fine-tuned balance between hydrophilic sugar pendant units and relatively hydrophobic polymer backbones can act as single-chain targeted nanocarriers for low molecular weight hydrophobic molecules. Non-covalent complexes formed from poly(triazolyl methacrylate) glycopolymers and low molecular weight hydrophobic guest molecules were characterised through a range of analytical techniques - DLS, SLS, TDA, fluorescence spectroscopy, surface tension analysis - and molecular dynamics (MD) modelling simulations provided further information on the macromolecular characteristics of these single chain complexes. Finally, we show that these nanocarriers can be utilised to deliver a hydrophobic guest molecule, Nile red, to both soluble and surface-immobilised concanavalin A (Con A) and peanut agglutinin (PNA) model lectins with high specificity, showing the potential of non-covalent complexation with specific glycopolymers in targeted guest-molecule delivery.
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Affiliation(s)
- J Madeira do O
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - R Foralosso
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - G Yilmaz
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - F Mastrotto
- Department of Pharmaceutical and Pharmacological Sciences, University of Padova, Via F. Marzolo 5, 35131 Padova, Italy
| | - P J S King
- Malvern Panalytical Ltd, Malvern, WR14 1XZ, UK
| | - R M Xerri
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - Y He
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | | | | | - C A Laughton
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - I Styliari
- University of Hertfordshire, Hatfield, Hertfordshire, UK.
| | - S Stolnik
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
| | - G Mantovani
- Molecular Therapeutics and Formulation Division, School of Pharmacy, University of Nottingham, NG7 2RD, Nottingham, UK.
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36
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Raikwar MM, Mohbiya DR, Sekar N. N‐Ethyl Carbazole Derived D‐π‐A‐π‐D Based Fluorophores: Consolidated Spectroscopic, Viscosity and DFT Studies. ChemistrySelect 2019. [DOI: 10.1002/slct.201903171] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Manish M. Raikwar
- Department of Dyestuff TechnologyInstitute of Chemical Technology, Nathalal Parekh Marg, Matunga Mumbai 400019 India
| | - Dhanraj R. Mohbiya
- Department of Dyestuff TechnologyInstitute of Chemical Technology, Nathalal Parekh Marg, Matunga Mumbai 400019 India
| | - Nagaiyan Sekar
- Department of Dyestuff TechnologyInstitute of Chemical Technology, Nathalal Parekh Marg, Matunga Mumbai 400019 India
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37
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Kundu A, Karthikeyan S, Sagara Y, Moon D, Anthony SP. Temperature-Controlled Locally Excited and Twisted Intramolecular Charge-Transfer State-Dependent Fluorescence Switching in Triphenylamine-Benzothiazole Derivatives. ACS OMEGA 2019; 4:5147-5154. [PMID: 31459690 PMCID: PMC6648163 DOI: 10.1021/acsomega.8b03099] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Accepted: 02/28/2019] [Indexed: 06/10/2023]
Abstract
Triphenylamine-benzothiazole derivatives, N-(4-(benzo[d]thiazol-2-yl)phenyl)-N-phenylbenzenamine (1), N-(4-(benzo[d]thiazol-2-yl)-3-methoxyphenyl)-N-phenylbenzenamine (2), and 2-(benzo[d]thiazol-2-yl)-5-(diphenylamino)phenol (3), showed unusual temperature-controlled locally excited (LE) and twisted intramolecular charge-transfer (TICT) state fluorescence switching in polar solvents. The detailed photophysical studies (absorption, fluorescence, lifetime, and quantum yield) in various solvents confirmed polarity-dependent LE and TICT state formation and fluorescence tuning. 1 and 2 exhibited strong fluorescence with short lifetime in nonpolar solvents compared to polar solvents. 1, 2, and 3 in dimethylformamide (DMF) at room temperature showed low-energy weak TICT state fluorescence, whereas high-energy strong LE state fluorescence was observed at -196 °C. Interestingly, further increasing the temperature from 20 to 100 °C, the DMF solution of 1 and 2 exhibited rare fluorescence enhancement with a slight blue shift of λmax via activating more vibrational bands of the TICT state. Thus, 1 and 2 showed weak TICT state fluorescence at room temperature, strong LE state fluorescence at -196 °C, and activation of TICT state at 100 °C. Moreover, molecular conformation and aggregation in the solid state influenced strongly on the fluorescence properties of 1, 2, and 3. Solid-state fluorescence and pH-responsive imidazole nitrogen have been exploited for demonstrating halochromism-induced fluorescence switching. Computational studies provided further insights into the fluorescence tuning and switching. The present studies provide understanding and opportunity to make use of D-A organic molecules in the LE and TICT states for achieving fluorescence switching and tuning.
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Affiliation(s)
- Anu Kundu
- School
of Chemical & Biotechnology, SASTRA
Deemed University, Thanjavur 613401, Tamil Nadu, India
| | - Subramanian Karthikeyan
- PG
and Research Department of Chemistry, Khadir
Mohideen College, Adirampattinam, Tamil Nadu 614701, India
| | - Yoshimitsu Sagara
- Research
Institute for Electronic Science, Hokkaido
University, N20, W10, Kita-Ku, Sapporo 001-0020, Japan
| | - Dohyun Moon
- Beamline
Department, Pohang Accelerator Laboratory, 80 Jigokro-127-beongil, Nam-gu, Pohang, Gyeongbuk, Korea
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38
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Hsu YP, Hall E, Booher G, Murphy B, Radkov AD, Yablonowski J, Mulcahey C, Alvarez L, Cava F, Brun YV, Kuru E, VanNieuwenhze MS. Fluorogenic D-amino acids enable real-time monitoring of peptidoglycan biosynthesis and high-throughput transpeptidation assays. Nat Chem 2019; 11:335-341. [PMID: 30804500 PMCID: PMC6444347 DOI: 10.1038/s41557-019-0217-x] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Accepted: 01/10/2019] [Indexed: 01/09/2023]
Abstract
Peptidoglycan (PG) is an essential cell wall component that maintains the morphology and viability of nearly all bacteria. Its biosynthesis requires periplasmic transpeptidation reactions which construct peptide cross-linkages between polysaccharide chains to endow mechanical strength. However, tracking transpeptidation reaction in vivo and in vitro is challenging, mainly due to the lack of efficient, biocompatible probes. Here, we report the design, synthesis, and application of rotor-fluorogenic D-amino acids (RfDAAs) enabling real-time, continuous tracking of transpeptidation reactions. These probes enable monitoring PG biosynthesis in real time through visualizing transpeptidase reactions in live cells, as well as real-time activity assays of D,D-, L,D-transpeptidases, and sortases in vitro. The unique ability of RfDAAs to become fluorescent when incorporated into PG provides a powerful new tool to study PG biosynthesis with high temporal resolution and prospectively enable high-throughput screening for inhibitors of PG biosynthesis.
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Affiliation(s)
- Yen-Pang Hsu
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA
| | - Edward Hall
- Department of Chemistry, Indiana University, Bloomington, IN, USA.,Department of Chemistry, Hanover College, Hanover, IN, USA
| | - Garrett Booher
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA
| | - Brennan Murphy
- Department of Chemistry, Indiana University, Bloomington, IN, USA
| | - Atanas D Radkov
- Department of Chemistry, Indiana University, Bloomington, IN, USA.,Department of Biophysics and Biochemistry, University of California San Francisco, San Francisco, CA, USA
| | - Jacob Yablonowski
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA
| | - Caitlyn Mulcahey
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA
| | - Laura Alvarez
- Department of Molecular Biology, Umeå University, Umeå, Sweden
| | - Felipe Cava
- Department of Molecular Biology, Umeå University, Umeå, Sweden
| | - Yves V Brun
- Department of Biology, Indiana University, Bloomington, IN, USA. .,Département de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Pavillon Roger-Gaudry, C.P. 6128, Succursale Centre-ville, Montréal, Canada.
| | - Erkin Kuru
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA. .,Department of Genetics, Harvard Medical School, Boston, MA, USA.
| | - Michael S VanNieuwenhze
- Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, USA. .,Department of Chemistry, Indiana University, Bloomington, IN, USA.
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39
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Zhao Z, Chen C, Wu W, Wang F, Du L, Zhang X, Xiong Y, He X, Cai Y, Kwok RTK, Lam JWY, Gao X, Sun P, Phillips DL, Ding D, Tang BZ. Highly efficient photothermal nanoagent achieved by harvesting energy via excited-state intramolecular motion within nanoparticles. Nat Commun 2019; 10:768. [PMID: 30770816 PMCID: PMC6377612 DOI: 10.1038/s41467-019-08722-z] [Citation(s) in RCA: 216] [Impact Index Per Article: 43.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Accepted: 01/21/2019] [Indexed: 12/29/2022] Open
Abstract
The exciting applications of molecular motion are still limited and are in urgent pursuit, although some fascinating concepts such as molecular motors and molecular machines have been proposed for years. Utilizing molecular motion in a nanoplatform for practical application has been scarcely explored due to some unconquered challenges such as how to achieve effective molecular motion in the aggregate state within nanoparticles. Here, we introduce a class of near infrared-absorbing organic molecules with intramolecular motion-induced photothermy inside nanoparticles, which enables most absorbed light energy to dissipate as heat. Such a property makes the nanoparticles a superior photoacoustic imaging agent compared to widely used methylene blue and semiconducting polymer nanoparticles and allow them for high-contrast photoacoustic imaging of tumours in live mice. This study not only provides a strategy for developing advanced photothermal/photoacoustic imaging nanoagents, but also enables molecular motion in a nanoplatform to find a way for practical application.
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Affiliation(s)
- Zheng Zhao
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Chao Chen
- State Key Laboratory of Medicinal Chemical Biology, Key Laboratory of Bioactive Materials, Ministry of Education, and College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Wenting Wu
- Key Laboratory of Synthetic and Self-assembly Chemistry for Organic Functional Molecules, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Road, Shanghai, 200032, China
| | - Fenfen Wang
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - Lili Du
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, 000000, China
- Institute of Life Sciences, Jiangsu University, Zhenjiang, 212013, China
| | - Xiaoyan Zhang
- State Key Laboratory of Medicinal Chemical Biology, Key Laboratory of Bioactive Materials, Ministry of Education, and College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Yu Xiong
- Guangdong Provincial Key Laboratory of Brain Science, Disease and Drug Development, Shenzhen Research Institute, No. 9 Yuexing 1st RD, South Area, Hi-tech Park, Nanshan, Shenzhen, 518057, China
| | - Xuewen He
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Yuanjing Cai
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Ryan T K Kwok
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Jacky W Y Lam
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Xike Gao
- Key Laboratory of Synthetic and Self-assembly Chemistry for Organic Functional Molecules, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Road, Shanghai, 200032, China
| | - Pingchuan Sun
- Key Laboratory of Functional Polymer Materials, Ministry of Education, College of Chemistry, Nankai University, Tianjin, 300071, China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, 000000, China
| | - Dan Ding
- State Key Laboratory of Medicinal Chemical Biology, Key Laboratory of Bioactive Materials, Ministry of Education, and College of Life Sciences, Nankai University, Tianjin, 300071, China.
| | - Ben Zhong Tang
- Department of Chemistry, The Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, Institute of Molecular Functional Materials, Division of Life Science and State Key Laboratory of Molecular Neuroscience, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China.
- Guangdong Provincial Key Laboratory of Brain Science, Disease and Drug Development, Shenzhen Research Institute, No. 9 Yuexing 1st RD, South Area, Hi-tech Park, Nanshan, Shenzhen, 518057, China.
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40
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Xie S, Wong AYH, Chen S, Tang BZ. Fluorogenic Detection and Characterization of Proteins by Aggregation‐Induced Emission Methods. Chemistry 2019; 25:5824-5847. [DOI: 10.1002/chem.201805297] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Indexed: 12/18/2022]
Affiliation(s)
- Sheng Xie
- Ming Wai Lau Centre for Reparative MedicineKarolinska Institutet Hong Kong S.A.R. China
| | - Alex Y. H. Wong
- Ming Wai Lau Centre for Reparative MedicineKarolinska Institutet Hong Kong S.A.R. China
| | - Sijie Chen
- Ming Wai Lau Centre for Reparative MedicineKarolinska Institutet Hong Kong S.A.R. China
| | - Ben Zhong Tang
- Department of Chemistry, Hong Kong Branch of Chinese National, Engineering Research Center for Tissue Restoration and ReconstructionInstitute of Molecular Functional MaterialsState Key Laboratory of NeuroscienceDivision of Biomedical Engineering, and Division of Life Science, HKUST-Shenzhen Research InstituteThe Hong Kong University of Science and Technology, Kowloon Hong Kong S.A.R. China
- NSFC Center for Luminescence from Molecular AggregatesSCUT-HKUST Joint Research InstituteState Key Laboratory of Luminescent Materials and DevicesSouth China University of Technology Guangzhou 510640 P.R. China
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41
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Kuba M, Pohl R, Hocek M. Synthesis of 2′-deoxycytidine and its triphosphate bearing tryptophan-based imidazolinone fluorophore for environment sensitive fluorescent labelling of DNA. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.09.061] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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42
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Vyšniauskas A, Kuimova MK. A twisted tale: measuring viscosity and temperature of microenvironments using molecular rotors. INT REV PHYS CHEM 2018. [DOI: 10.1080/0144235x.2018.1510461] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Aurimas Vyšniauskas
- Center of Physical Sciences and Technology, Vilnius, Lithuania
- Chemistry Department, Vilnius University, Vilnius, Lithuania
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43
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Goh WL, Lee MY, Lim TX, Chua JS, Brenner S, Ghadessy FJ, Teo YN. A novel molecular rotor facilitates detection of p53-DNA interactions using the Fluorescent Intercalator Displacement Assay. Sci Rep 2018; 8:12946. [PMID: 30154420 PMCID: PMC6113202 DOI: 10.1038/s41598-018-31197-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 08/13/2018] [Indexed: 01/04/2023] Open
Abstract
We have investigated the use of fluorescent molecular rotors as probes for detection of p53 binding to DNA. These are a class of fluorophores that undergo twisted intramolecular charge transfer (TICT). They are non-fluorescent in a freely rotating conformation and experience a fluorescence increase when restricted in the planar conformation. We hypothesized that intercalation of a molecular rotor between DNA base pairs would result in a fluorescence turn-on signal. Upon displacement by a DNA binding protein, measurable loss of signal would facilitate use of the molecular rotor in the fluorescent intercalator displacement (FID) assay. A panel of probes was interrogated using the well-established p53 model system across various DNA response elements. A novel, readily synthesizable molecular rotor incorporating an acridine orange DNA intercalating group (AO-R) outperformed other conventional dyes in the FID assay. It enabled relative measurement of p53 sequence-specific DNA interactions and study of the dominant-negative effects of cancer-associated p53 mutants. In a further application, AO-R also proved useful for staining apoptotic cells in live zebrafish embryos.
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Affiliation(s)
- Walter L Goh
- p53 Laboratory, A*STAR, 8A Biomedical Grove, #06-06 Immunos, Singapore, 138648, Singapore
| | - Min Yen Lee
- Molecular Engineering Lab, Biomedical Sciences Institutes, A*STAR, 61 Biopolis Drive, Singapore, 138673, Singapore
| | - Ting Xiang Lim
- p53 Laboratory, A*STAR, 8A Biomedical Grove, #06-06 Immunos, Singapore, 138648, Singapore
| | - Joy S Chua
- p53 Laboratory, A*STAR, 8A Biomedical Grove, #06-06 Immunos, Singapore, 138648, Singapore
| | - Sydney Brenner
- Molecular Engineering Lab, Biomedical Sciences Institutes, A*STAR, 61 Biopolis Drive, Singapore, 138673, Singapore
| | - Farid J Ghadessy
- p53 Laboratory, A*STAR, 8A Biomedical Grove, #06-06 Immunos, Singapore, 138648, Singapore.
| | - Yin Nah Teo
- Molecular Engineering Lab, Biomedical Sciences Institutes, A*STAR, 61 Biopolis Drive, Singapore, 138673, Singapore.
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44
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Suhling K. Twist and Probe-Fluorescent Molecular Rotors Image Escherichia coli Cell Membrane Viscosity. Biophys J 2018; 111:1337-1338. [PMID: 27705757 DOI: 10.1016/j.bpj.2016.08.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 08/15/2016] [Indexed: 01/16/2023] Open
Affiliation(s)
- Klaus Suhling
- Department of Physics, King's College London, London, UK.
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45
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Xie Z, Yu T, Chen J, Ubba E, Wang L, Mao Z, Su T, Zhang Y, Aldred MP, Chi Z. Weak interactions but potent effect: tunable mechanoluminescence by adjusting intermolecular C-H···π interactions. Chem Sci 2018; 9:5787-5794. [PMID: 30079189 PMCID: PMC6050600 DOI: 10.1039/c8sc01703d] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 06/02/2018] [Indexed: 12/28/2022] Open
Abstract
A new mechanoluminescent material (4-(diphenylamino)phenyl)(4-(diphenylphosphanyl)phenyl)methanone (CDpP), which displays tunable mechanoluminescent emission colors, has been designed and successfully synthesized. CDpP shows two distinct mechanoluminescent colors (blue and green) in different crystalline states. Single-crystal analyses and femtosecond transient emission studies reveal that the striking tunable mechanoluminescence properties of CDpP mainly originate from the different C-H···π interactions in the crystal structures. CDpP crystals with more C-H···π interactions show blue mechanoluminescence (ML), and the emission is attributed to the locally excited (LE)-state because the twisting process for the excited state is restricted by C-H···π interactions. Conversely, CDpP crystals with fewer C-H···π interactions display green ML, in which the red-shifted emission band originates from the twisted intramolecular charge transfer (TICT) excited state because the diphenylamine moiety is relatively free to rotate. The manipulation of weak intermolecular interactions in the crystalline state is a useful and reliable strategy for the tuning of the ML emission wavelengths.
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Affiliation(s)
- Zongliang Xie
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Tao Yu
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Junru Chen
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Eethamukkala Ubba
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Leyu Wang
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Zhu Mao
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Tongtong Su
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Yi Zhang
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Matthew P Aldred
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
| | - Zhenguo Chi
- PCFM Lab , GD HPPC Lab , Guangdong Engineering Technology Research Center for High-performance Organic and Polymer Photoelectric Functional Films , State Key Laboratory of Optoelectronic Material and Technologies , School of Chemistry , Sun Yat-sen University , Guangzhou , 510275 , P. R. China . ; ;
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46
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Liese D, Haberhauer G. Rotations in Excited ICT States - Fluorescence and its Microenvironmental Sensitivity. Isr J Chem 2018. [DOI: 10.1002/ijch.201800032] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- David Liese
- Institut für Organische Chemie; Universität Duisburg-Essen; Universitätsstr. 7 D-45117 Essen Germany
| | - Gebhard Haberhauer
- Institut für Organische Chemie; Universität Duisburg-Essen; Universitätsstr. 7 D-45117 Essen Germany
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47
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Cao KJ, Elbel KM, Cifelli JL, Cirera J, Sigurdson CJ, Paesani F, Theodorakis EA, Yang J. Solvation-Guided Design of Fluorescent Probes for Discrimination of Amyloids. Sci Rep 2018; 8:6950. [PMID: 29725045 PMCID: PMC5934448 DOI: 10.1038/s41598-018-25131-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2018] [Accepted: 04/16/2018] [Indexed: 11/09/2022] Open
Abstract
The deposition of insoluble protein aggregates in the brain is a hallmark of many neurodegenerative diseases. While their exact role in neurodegeneration remains unclear, the presence of these amyloid deposits often precedes clinical symptoms. As a result, recent progress in imaging methods that utilize amyloid-specific small molecule probes have become a promising avenue for antemortem disease diagnosis. Here, we present a series of amino-aryl cyanoacrylate (AACA) fluorophores that show a turn-on fluorescence signal upon binding to amyloids in solution and in tissue. Using a theoretical model for environmental sensitivity of fluorescence together with ab initio computational modeling of the effects of polar environment on electron density distribution and conformational dynamics, we designed, synthesized, and evaluated a set of fluorophores that (1) bind to aggregated forms of Alzheimer’s-related β-amyloid peptides with low micromolar to high nanomolar affinities and (2) have the capability to fluorescently discriminate different amyloids based on differences in amino acid composition within the binding pocket through exploitation of their solvatochromic properties. These studies showcase the rational design of a family of amyloid-binding imaging agents that could be integrated with new optical approaches for the clinical diagnosis of amyloidoses, where accurate identification of the specific neurodegenerative disease could aid in the selection of a proper course for treatment.
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Affiliation(s)
- Kevin J Cao
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA
| | - Kristyna M Elbel
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA
| | - Jessica L Cifelli
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA
| | - Jordi Cirera
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA.,Departament de Química Inorgànica i Orgànica (Secció d'Inorgànica) and Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona,c/Martí i Franquès 1-11, 08028, Barcelona, Spain
| | | | - Francesco Paesani
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA
| | | | - Jerry Yang
- Department of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, 92093-0358, USA.
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48
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Application of a catalyst-free Domino Mannich/Friedel-Crafts alkylation reaction for the synthesis of novel tetrahydroquinolines of potential antitumor activity. Tetrahedron 2018. [DOI: 10.1016/j.tet.2017.12.049] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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49
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Dong J, Li X, Zhang K, Di Yuan Y, Wang Y, Zhai L, Liu G, Yuan D, Jiang J, Zhao D. Confinement of Aggregation-Induced Emission Molecular Rotors in Ultrathin Two-Dimensional Porous Organic Nanosheets for Enhanced Molecular Recognition. J Am Chem Soc 2018; 140:4035-4046. [DOI: 10.1021/jacs.7b13069] [Citation(s) in RCA: 97] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Jinqiao Dong
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Xu Li
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Kang Zhang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Yi Di Yuan
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Yuxiang Wang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Linzhi Zhai
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Guoliang Liu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Daqiang Yuan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Jianwen Jiang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
| | - Dan Zhao
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 4 Engineering Drive 4, Singapore 117585, Singapore
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50
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Auxiliary Methoxy Aided Triphenylamine and Dicyanoisophorone Based Flurophores with Viscosity and Polarity Sensitive Intramolecular Charge Transfer. J SOLUTION CHEM 2018. [DOI: 10.1007/s10953-018-0722-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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