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For: Karunanithy G, Mackenzie HW, Hansen DF. Virtual Homonuclear Decoupling in Direct Detection Nuclear Magnetic Resonance Experiments Using Deep Neural Networks. J Am Chem Soc 2021;143:16935-16942. [PMID: 34633815 DOI: 10.1021/jacs.1c04010] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Chen X, Zhou L, Ni Y, Liu J, Fang Q, Huang Y, Chen Z, Xia H, Zhan H. WPR-Net: A Deep Learning Protocol for Highly Accelerated NMR Spectroscopy with Faithful Weak Peak Reconstruction. Anal Chem 2025;97:7010-7019. [PMID: 40067126 DOI: 10.1021/acs.analchem.4c04830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]
2
Luo Y, Zheng X, Qiu M, Gou Y, Yang Z, Qu X, Chen Z, Lin Y. Deep learning and its applications in nuclear magnetic resonance spectroscopy. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2025;146-147:101556. [PMID: 40306798 DOI: 10.1016/j.pnmrs.2024.101556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 12/26/2024] [Accepted: 12/30/2024] [Indexed: 05/02/2025]
3
Shukla VK, Karunanithy G, Vallurupalli P, Hansen DF. A combined NMR and deep neural network approach for enhancing the spectral resolution of aromatic side chains in proteins. SCIENCE ADVANCES 2024;10:eadr2155. [PMID: 39705363 PMCID: PMC11801238 DOI: 10.1126/sciadv.adr2155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Accepted: 11/15/2024] [Indexed: 12/22/2024]
4
Prestegard JH, Boons GJ, Chopra P, Glushka J, Grimes JH, Simon B. Neural net analysis of NMR spectra from strongly-coupled spin systems. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2024;368:107792. [PMID: 39490301 PMCID: PMC11573630 DOI: 10.1016/j.jmr.2024.107792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Revised: 10/17/2024] [Accepted: 10/20/2024] [Indexed: 11/05/2024]
5
Jahangiri A, Orekhov V. Beyond traditional magnetic resonance processing with artificial intelligence. Commun Chem 2024;7:244. [PMID: 39465320 PMCID: PMC11514297 DOI: 10.1038/s42004-024-01325-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Accepted: 10/09/2024] [Indexed: 10/29/2024]  Open
6
Rasulov U, Wang HK, Viennet T, Droemer MA, Matosin S, Schindler S, Sun ZYJ, Mureddu L, Vuister GW, Robson SA, Arthanari H, Kuprov I. Protein NMR assignment by isotope pattern recognition. SCIENCE ADVANCES 2024;10:eado0403. [PMID: 39231223 PMCID: PMC11373586 DOI: 10.1126/sciadv.ado0403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 07/29/2024] [Indexed: 09/06/2024]
7
Zhan H, Liu J, Fang Q, Chen X, Ni Y, Zhou L. Fast Pure Shift NMR Spectroscopy Using Attention-Assisted Deep Neural Network. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2309810. [PMID: 38840448 PMCID: PMC11304274 DOI: 10.1002/advs.202309810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 05/06/2024] [Indexed: 06/07/2024]
8
Karunanithy G, Shukla VK, Hansen DF. Solution-state methyl NMR spectroscopy of large non-deuterated proteins enabled by deep neural networks. Nat Commun 2024;15:5073. [PMID: 38871714 PMCID: PMC11176362 DOI: 10.1038/s41467-024-49378-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 06/04/2024] [Indexed: 06/15/2024]  Open
9
Schiavina M, Bracaglia L, Rodella MA, Kümmerle R, Konrat R, Felli IC, Pierattelli R. Optimal 13C NMR investigation of intrinsically disordered proteins at 1.2 GHz. Nat Protoc 2024;19:406-440. [PMID: 38087081 DOI: 10.1038/s41596-023-00921-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 09/20/2023] [Indexed: 02/12/2024]
10
Klukowski P, Riek R, Güntert P. Time-optimized protein NMR assignment with an integrative deep learning approach using AlphaFold and chemical shift prediction. SCIENCE ADVANCES 2023;9:eadi9323. [PMID: 37992167 PMCID: PMC10664993 DOI: 10.1126/sciadv.adi9323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 10/20/2023] [Indexed: 11/24/2023]
11
Shukla VK, Heller GT, Hansen DF. Biomolecular NMR spectroscopy in the era of artificial intelligence. Structure 2023;31:1360-1374. [PMID: 37848030 DOI: 10.1016/j.str.2023.09.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 09/15/2023] [Accepted: 09/21/2023] [Indexed: 10/19/2023]
12
Yang Z, Zheng X, Gao X, Zeng Q, Yang C, Luo J, Zhan C, Lin Y. Deep Learning Methodology for Obtaining Ultraclean Pure Shift Proton Nuclear Magnetic Resonance Spectra. J Phys Chem Lett 2023;14:3397-3402. [PMID: 36999661 DOI: 10.1021/acs.jpclett.3c00455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
13
Cordova M, Moutzouri P, Simões de Almeida B, Torodii D, Emsley L. Pure Isotropic Proton NMR Spectra in Solids using Deep Learning. Angew Chem Int Ed Engl 2023;62:e202216607. [PMID: 36562545 PMCID: PMC10107932 DOI: 10.1002/anie.202216607] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 12/16/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022]
14
Jahangiri A, Han X, Lesovoy D, Agback T, Agback P, Achour A, Orekhov V. NMR spectrum reconstruction as a pattern recognition problem. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023;346:107342. [PMID: 36459916 DOI: 10.1016/j.jmr.2022.107342] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 11/15/2022] [Accepted: 11/19/2022] [Indexed: 06/17/2023]
15
Bolik-Coulon N, Sever AIM, Harkness RW, Aramini JM, Toyama Y, Hansen DF, Kay LE. Less is more: A simple methyl-TROSY based pulse scheme offers improved sensitivity in applications to high molecular weight complexes. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2023;346:107326. [PMID: 36508761 DOI: 10.1016/j.jmr.2022.107326] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 11/03/2022] [Accepted: 11/04/2022] [Indexed: 06/17/2023]
16
Karunanithy G, Yuwen T, Kay LE, Hansen DF. Towards autonomous analysis of chemical exchange saturation transfer experiments using deep neural networks. JOURNAL OF BIOMOLECULAR NMR 2022;76:75-86. [PMID: 35622310 PMCID: PMC9246985 DOI: 10.1007/s10858-022-00395-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 05/05/2022] [Indexed: 06/12/2023]
17
Theillet FX. In-Cell Structural Biology by NMR: The Benefits of the Atomic Scale. Chem Rev 2022;122:9497-9570. [PMID: 35357148 DOI: 10.1021/acs.chemrev.1c00937] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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