1
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Kim SF, Amber C, Bartholomew GL, Sarpong R. Skeletal Editing Strategies Driven by Total Synthesis. Acc Chem Res 2025. [PMID: 40373286 DOI: 10.1021/acs.accounts.5c00174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2025]
Abstract
ConspectusSingle-atom skeletal editing strategies that precisely modify the core frameworks of molecules have the potential to streamline and accelerate organic synthesis by enabling conceptually simple, but otherwise synthetically challenging, retrosynthetic disconnections. In contrast to broader skeletal remodeling and rearrangement strategies, these methodologies more specifically target single-atom changes with high selectivity, even within complex molecules such as natural products or pharmaceuticals. For the past several years, our laboratory has developed several skeletal editing methodologies, including single-atom ring contractions, expansions, and transpositions of both saturated and unsaturated heterocycles, as well as other carbon scaffolds. This Account details the evolution of "skeletal editing logic" within the context of our extensive work on natural product total synthesis.Early work in the Sarpong group leveraged metal-mediated C-C bond cleavage of in situ-generated strained intermediates to accomplish total syntheses of natural products, such as the icetexane diterpenoids and cyathane diterpenes. Continuing our focus on leveraging C-C bond cleavage through "break-it-to-make-it" strategies, we then developed carvone remodeling strategies to access a variety of terpenoids (including longiborneol sesquiterpenoids, phomactins, and xishacorenes) from hydroxylated pinene derivatives. In applying this skeletal remodeling and C-C cleavage framework to alkaloid natural products, such as the preparaherquimides and lycodine-type alkaloids, we recognized that single-atom changes to the saturated nitrogen-containing rings within these natural products would enable the direct conversion between distinct but structurally related natural product families. Thus, we began developing methods that selectively modify the core frameworks of N-heterocycles; this focus led to our work on the deconstructive fluorination and diversification of piperidines and ultimately to our recent body of work on direct, single-atom core framework modifications (single-atom skeletal editing). In the context of saturated heterocycles, we developed photomediated enantioselective ring contractions of α-acylated motifs and reductive ring contractions of cyclic hydroxylamines. For unsaturated heterocycles, we have developed ring contractions of azines (e.g., pyrimidine to pyrazole), 15N isotopic labeling of azines, and phototranspositions of indazoles to benzimidazoles. To direct our focus on reaction development, a cheminformatic analysis of heteroaromatic skeletal edits served to quantitatively inform which transformations would most significantly expand the accessible chemical space. Apart from heterocycles, we also reported single-nitrogen insertion through the reductive amination of carbonyl C-C bonds. Ultimately, the goal of this research is to develop mild and selective skeletal editing methodologies that can be applied to total synthesis and organic synthesis more generally. While recent total syntheses from our group have targeted simplified retrosyntheses through single-atom skeletal editing logic (e.g., daphenylline and harringtonolide), multiple steps were still required to achieve the formal desired "edit". As such, the continued development of truly single-step, mild, and selective reactions that can edit the cores of highly complex molecules remains highly desirable.
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Affiliation(s)
- Sojung F Kim
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Charis Amber
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - G Logan Bartholomew
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, United States
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2
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Liu S, Zhou J, Yu L, Liu Y, Huang Y, Ouyang Y, Liu GK, Xu XH, Shibata N. Nitrogen-Based Organofluorine Functional Molecules: Synthesis and Applications. Chem Rev 2025; 125:4603-4764. [PMID: 40261821 DOI: 10.1021/acs.chemrev.4c00661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]
Abstract
Fluorine and nitrogen form a successful partnership in organic synthesis, medicinal chemistry, and material sciences. Although fluorine-nitrogen chemistry has a long and rich history, this field has received increasing interest and made remarkable progress over the past two decades, driven by recent advancements in transition metal and organocatalysis and photochemistry. This review, emphasizing contributions from 2015 to 2023, aims to update the state of the art of the synthesis and applications of nitrogen-based organofluorine functional molecules in organic synthesis and medicinal chemistry. In dedicated sections, we first focus on fluorine-containing reagents organized according to the type of fluorine-containing groups attached to nitrogen, including N-F, N-RF, N-SRF, and N-ORF. This review also covers nitrogen-linked fluorine-containing building blocks, catalysts, pharmaceuticals, and agrochemicals, underlining these components' broad applicability and growing importance in modern chemistry.
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Affiliation(s)
- Shuai Liu
- College of Chemistry and Chemical Engineering, Donghua University, 2999 North Renmin Road, Shanghai 201620, China
- National Engineering Research Center for Carbohydrate Synthesis, Jiangxi Normal University, Nanchang 330022, China
| | - Jun Zhou
- Department of Nanopharmaceutical Sciences & Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya 466-8555, Japan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou 350002, China
| | - Lu Yu
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Yingle Liu
- School of Chemistry and Environmental Engineering, Sichuan University of Science&Engineering, 180 Xueyuan Street, Huixing Lu, Zigong, Sichuan 643000, China
| | - Yangen Huang
- College of Chemistry and Chemical Engineering, Donghua University, 2999 North Renmin Road, Shanghai 201620, China
| | - Yao Ouyang
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Guo-Kai Liu
- School of Pharmacy, Shenzhen University Medical School, Shenzhen University, Shenzhen 518055, China
| | - Xiu-Hua Xu
- Key Laboratory of Fluorine and Nitrogen Chemistry and Advanced Materials, Shanghai Institute of Organic Chemistry, Chinese Academy of Science, 345 Lingling Lu, Shanghai 200032, China
| | - Norio Shibata
- Department of Nanopharmaceutical Sciences & Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya 466-8555, Japan
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3
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Zeng G, Fu Z, Yin B, Huang L. Visible Light-Induced Single-Atom Insertion of Indenes via Aerobic Ring Scission-Condensation-Rearomatization. Chemistry 2025; 31:e202403828. [PMID: 40098588 DOI: 10.1002/chem.202403828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2025] [Revised: 03/15/2025] [Accepted: 03/17/2025] [Indexed: 03/19/2025]
Abstract
In this study, we present a photocatalyzed single-atom insertion of indenes, involving an aerobic ring scission into dicarbonyl intermediates, which subsequently undergo condensation and rearomatization to efficiently synthesize isoquinoline and naphthalene derivatives. The use of an inexpensive organic dye as the photocatalyst under aerobic conditions with cheap ammonium acetate (NH4OAc) as the nitrogen source makes this method very practical and environmentally friendly to access isoquinoline. Alternatively, an intramolecular carbon-atom-insertion process, involving the Aldol reaction of the dicarbonyl intermediates, affords the naphthalenamine and naphthalen-2-ol derivatives. Mechanistic studies support that the superoxide anion radical species mediates the C═C double bond scission of indenes rather than the singlet oxygen intermediate.
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Affiliation(s)
- Guohui Zeng
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, 510640, P. R. China
| | - Zeyuan Fu
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, 510640, P. R. China
| | - Biaolin Yin
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, 510640, P. R. China
| | - Liangbin Huang
- Key Laboratory of Functional Molecular Engineering of Guangdong Province, School of Chemistry and Chemical Engineering, South China University of Technology, Guangzhou, 510640, P. R. China
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4
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Moghimi P, Sabet-Sarvestani H, Moghimi V, Norozi-Shad N, Szostak M. Single-atom molecular editing: transformative advances in carbocyclic and heterocyclic frameworks. Org Biomol Chem 2025; 23:3982-4005. [PMID: 40177717 DOI: 10.1039/d5ob00272a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
Abstract
Single-atom editing has emerged as a transformative strategy in organic synthesis, enabling precise modification of carbocyclic and heterocyclic frameworks by selectively targeting single atoms. These frameworks are crucial backbones of pharmaceuticals, agrochemicals, and advanced materials, making this approach powerful for organic chemists. In drug discovery and natural product synthesis, single-atom editing diversifies molecular scaffolds and tailors molecular properties to enhance pharmacological activity. In heterocyclic synthesis, this approach enables controlled heteroatom substitution, addition or deletion in an unprecedented and highly selective manner compared to traditional methods. Recent advances in transition-metal catalysis, organocatalysis, photoredox catalysis, and heterocycle-to-heterocycle metamorphosis have expanded the versatility of single-atom editing, enabling the synthesis of various carbocyclic and heterocyclic compounds. Principally, this approach has been exploited to design new architectures that are not easily accessible by other methods and to establish major improvements in the synthesis of known scaffolds, providing more efficient and sustainable routes towards large-scale chemical synthesis. This review overviews recent advances, focusing on carbocyclic and heterocyclic frameworks, and is organized by key single-atom editing strategies, such as ring contractions, atom deletions, ring expansions, and atom insertions. The review highlights key transformations like Favorskii and Wolff rearrangements, alongside modern photochemical and transition-metal-catalyzed processes, to provide a broad overview of synthetic applications and inspire further advancements in targeted molecular edits.
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Affiliation(s)
- Parvin Moghimi
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Hossein Sabet-Sarvestani
- Department of Food Additives, Food Science and Technology Research Institute, Research Center for Iranian Academic Center for Education, Culture and Research (ACECR), Khorasan Razavi Branch, Mashhad, Iran
| | - Vahid Moghimi
- Department of Biology, Faculty of Science, Hakim Sabzevari University, Sabzevar, Iran
| | - Nazanin Norozi-Shad
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Michal Szostak
- Department of Chemistry, Rutgers University, Newark, NJ, USA.
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5
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Cui FH, Gao LH, Ruan K, Li F, Meng M, Ma K, Lu Z, Fei J, Tian H, Liu LL, Lin YM, Xia H. Fusion of Four Aromatic Rings via an Atom-Mutual-Embedding Strategy to Form a Tetrahexacyclic System. J Am Chem Soc 2025; 147:13601-13609. [PMID: 40227147 DOI: 10.1021/jacs.5c00697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/15/2025]
Abstract
Skeletal manipulation of aromatic compounds has emerged as a potent tool in synthetic chemistry, but simultaneous multiring manipulation remains largely unexplored due to the inherent complexities of ring and site selectivity. Herein, we report an unprecedented multiring skeletal manipulation that fuses four 5-membered aromatic rings, comprising two organic and two metal-containing aromatic systems, into a novel metal-bridged 6/6/6/6-membered ring scaffold. The sequential ring fusion is accomplished through an atom-mutual-embedding strategy; this strategy entails the stepwise insertion of two nitrogen atoms into separate metal-carbon bonds and simultaneously integrates a metal atom as a bridge across two isoxazole moieties. The presence of a central metal atom is crucial for ensuring precise substrate alignment and enhancing both the ring and site specificity. The resulting tetrahexacyclic products exhibit remarkable stability and superior near-infrared (NIR) functional properties, surpassing those of the precursor compounds. This work not only establishes a conceptual foundation for designing versatile substrate molecules amenable to intricate editing but also contributes to the rational and performance-targeted manipulation of molecular architectures.
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Affiliation(s)
- Fei-Hu Cui
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Sciences, Guangxi Normal University, Guilin 541004, China
| | - Le-Han Gao
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Kaidong Ruan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
- Shenzhen Grubbs Institute, Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Fei Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Meng Meng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Kexin Ma
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Zhengyu Lu
- Shenzhen Grubbs Institute, Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Jiawei Fei
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Huayu Tian
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Liu Leo Liu
- Shenzhen Grubbs Institute, Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Yu-Mei Lin
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Haiping Xia
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
- Shenzhen Grubbs Institute, Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
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6
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Towell SE, Jareczek MJ, Cooke LS, Godfrey DR, Zhukhovitskiy AV. Skeletal Editing of Polymer Backbones and Its Impact Across the Polymer Lifecycle. Acc Chem Res 2025; 58:1275-1283. [PMID: 40173419 DOI: 10.1021/acs.accounts.5c00054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2025]
Abstract
ConspectusIn the last five years, interest in the precise modification of molecular cores─termed skeletal editing─has rapidly expanded in the Chemistry community. Beyond the intrinsic value of these transformations, skeletal editing also has value in the attention it brings to under-explored chemical challenges, whose solutions could transform the practice of Chemistry at large. In few contexts does this perspective ring as true as in the realm of polymers. Inspired by the revolutionary power of biologically derived machinery called CRISPR-Cas9 to edit nucleic acid polymers and, consequently, the genetic meaning encoded in them, we envisioned that skeletal editing of synthetic polymer backbones may also enable control over the structure and "meaning"─i.e., properties and function─of plastics. However, the idea of editing polymer backbones brings about numerous fundamental chemical questions that must be answered to make the vision a reality: for instance, how to constructively activate carbon-carbon and carbon-heteroatom bonds that make up typical polymer backbones and how to do so in a site-selective manner? While many fundamental questions have begun to be answered by the small molecule community, they are yet to be applied to the realm of polymers, and such adaptation often begets new scientific challenges. Moreover, as we begin to tackle these questions, we must always consider how advances in skeletal editing of polymer backbones impact the broader contexts of applications and sustainability of plastics.In this Account, we summarize our efforts to advance the skeletal editing of polymer backbones, focusing on how such methods can affect each stage of the polymer lifecycle: (1) provide an entry to previously challenging-to-access functional polymers or to existing ones but from new feedstocks, (2) evolve one type of polymer into another with associated changes in material properties, and (3) enable the breakdown of otherwise intractable polymer backbones. Along the way, we describe our rationale behind the selection and development of reactions utilized for skeletal editing. We explain how small molecule reactions often need to be adapted to suit polymeric substrates and the methodology optimizations we needed to do to accomplish our edits. We also discuss the considerations involved in the selection or design of polymeric substrates for editing with an eye toward what edits can add to polymer function and how to advance the field. We conclude with an outlook on outstanding challenges that we aim to address in future work establishing areas for future exploration within each of our topic areas.
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Affiliation(s)
- Sydney E Towell
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Mark J Jareczek
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Lauren S Cooke
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Daniel R Godfrey
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Aleksandr V Zhukhovitskiy
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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7
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Liu LJ, Tian MY, Lang ZY, Wang YL, He CY, Chen YZ, Han WY. Indole-Quinoline Transmutation Enabled by a Formal Rhodium Carbynoid. Angew Chem Int Ed Engl 2025:e202501966. [PMID: 40207390 DOI: 10.1002/anie.202501966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Revised: 04/09/2025] [Accepted: 04/09/2025] [Indexed: 04/11/2025]
Abstract
Skeleton editing is an emerging and powerful tool in organic chemistry because it can simplify synthetic procedures towards complex molecules. Herein, we present an approach for indole-quinoline transmutation through rhodium-catalyzed single-carbon insertion into the C2(sp2)─C3(sp2) bond of an indole with an α-diazotrifluoroethyl sulfonium salt that we developed. This protocol involves a formal trifluoromethyl rhodium carbynoid (CF3C+ = Rh) resembling a trifluoromethyl cationic carbyne (CF3C+:), allowing facile access to an array of quinolines in moderate to high yields. Potential applications in the late-stage skeletal editing of pharmaceutical and natural product derivatives, preparation of adapalene analogs, scaled-up synthesis, and transformations of products are highlighted. Finally, a computational study was conducted to support the envisioned mechanism.
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Affiliation(s)
- Lu-Jie Liu
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Meng-Yang Tian
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Zhi-Yu Lang
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Yong-Li Wang
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Chun-Yang He
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Yong-Zheng Chen
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
| | - Wen-Yong Han
- Guizhou Provincial Key Laboratory of Innovation and Manufacturing for Pharmaceuticals, School of Pharmacy, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
- Key Laboratory of Basic Pharmacology of Ministry of Education and Joint International Research Laboratory of Ethnomedicine of Ministry of Education, Zunyi Medical University, No. 6 West Xuefu Rd., Zunyi, 563006, China
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8
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Huang B, Zou J, Wang S, Lu H. Skeletal Editing of Isoindolines to Tetralins. Chemistry 2025; 31:e202404518. [PMID: 39995241 DOI: 10.1002/chem.202404518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2024] [Revised: 02/22/2025] [Accepted: 02/24/2025] [Indexed: 02/26/2025]
Abstract
We present a skeletal editing strategy for transforming isoindolines into tetralins via a cascade N-atom removal deconstruction followed by a Diels-Alder reaction between in situ generated o-quinodimethanes and activated alkenes. This approach features a broad substrate scope, excellent stereoselectivity, and high yields, demonstrating its applicability to complex bioactive compounds and natural products. Notably, case studies showcase the efficient construction of challenging spirocyclic and bridged systems, underscoring the method's versatility and potential for advancing applications in synthetic chemistry.
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Affiliation(s)
- Bowei Huang
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
| | - Jiaqi Zou
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
| | - Saizhou Wang
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
| | - Hongjian Lu
- State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
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9
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Tyler JL, Trauner D, Glorius F. Reaction development: a student's checklist. Chem Soc Rev 2025; 54:3272-3292. [PMID: 39912730 DOI: 10.1039/d4cs01046a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2025]
Abstract
So you've discovered a reaction. But how do you turn this new discovery into a fully-fledged program that maximises the potential of your novel transformation? Herein, we provide a student's checklist to serve as a helpful guide for synthesis development, allowing you to thoroughly investigate the chemistry in question while ensuring that no key aspect of the project is overlooked. A wide variety of the most illuminating synthetic and spectroscopic techniques will be summarised, in conjunction with literature examples and our own insights, to provide sound justifications for their implementation towards the goal of developing new reactions.
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Affiliation(s)
- Jasper L Tyler
- University of Muenster, Institute for Organic Chemistry, Corrensstrasse 36, 48149 Muenster, Germany.
| | - Dirk Trauner
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania, 19104, USA.
| | - Frank Glorius
- University of Muenster, Institute for Organic Chemistry, Corrensstrasse 36, 48149 Muenster, Germany.
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10
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Bartholomew GL, Karas LJ, Eason RM, Yeung CS, Sigman MS, Sarpong R. Cheminformatic Analysis of Core-Atom Transformations in Pharmaceutically Relevant Heteroaromatics. J Med Chem 2025; 68:6027-6040. [PMID: 40053676 DOI: 10.1021/acs.jmedchem.4c02839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2025]
Abstract
Heteroaromatics are the basis for many pharmaceuticals. The ability to modify these structures through selective core-atom transformations, or "skeletal edits", can dramatically expand the landscape for drug discovery and development. However, despite the importance of core-atom modifications, the quantitative impact of such transformations on accessible chemical space remains undefined. Here, we report a cheminformatic platform to analyze which skeletal edits would most increase access to novel chemical space. This study underscores the significance of emerging single and multiple core-atom transformations of heteroaromatics in enhancing chemical diversity, for example, at a late-stage of a drug discovery campaign. Our findings provide a quantitative framework for prioritizing core-atom modifications in heteroaromatic structural motifs, calling for the development of new methods to achieve these types of transformations.
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Affiliation(s)
- G Logan Bartholomew
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Lucas J Karas
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Reilly M Eason
- Modeling & Informatics, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Charles S Yeung
- Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Matthew S Sigman
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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11
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Lin Y, Hou Z, Yu T, Lin M, Fu G, Chen T, Li L, Zhu Z, Chen X. Skeleton Editing of Benzothiazoles to Spiro[benzothiazole- n-alkanes] by Carbon-to-Carbon Single-Atom Swapping. J Org Chem 2025; 90:3877-3887. [PMID: 40047803 DOI: 10.1021/acs.joc.4c02876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
Skeleton editing can be used to precisely replace or rearrange atoms in the core ring structure of complex molecules and is often used to modify heteroaromatic compounds. However, this approach has not been used to modify thiazole rings. We report the direct construction of spiro[benzothiazole-n-alkanes] through skeleton editing of thiazolium salts by carbon-to-carbon single-atom swapping. Skeleton editing via carbon deletion and insertion has the advantages of high efficiency, high selectivity, simple operation, and one-step, metal-catalyst-free construction of novel spirocyclic products with novel structures.
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Affiliation(s)
- Yuqun Lin
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Zhuoqun Hou
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Tong Yu
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Meiyi Lin
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Guozhang Fu
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Tianxiang Chen
- Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong 999077, China
| | - Lanyu Li
- Guilin Medical University Laboratory Animal Center, Guilin, Guangxi 541001, China
| | - Zhongzhi Zhu
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
| | - Xiuwen Chen
- School of Environmental and Chemical Engineering, Wuyi University, Jiangmen 529020, China
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12
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Shaydullin RR, Galushko AS, Ilyushenkova VV, Vlasova YS, Ananikov VP. Are activation barriers of 50-70 kcal mol -1 accessible for transformations in organic synthesis in solution? Chem Sci 2025; 16:5289-5298. [PMID: 40007660 PMCID: PMC11848743 DOI: 10.1039/d4sc08243e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Accepted: 02/06/2025] [Indexed: 02/27/2025] Open
Abstract
High-temperature organic chemistry represents a transformative approach for accessing reaction pathways previously considered unattainable under conventional conditions. This study focuses on a high-temperature synthesis as a powerful method for performing solution-phase organic reactions at temperatures up to 500 °C. Using the isomerization of N-substituted pyrazoles as a model reaction, we demonstrate the ability to overcome activation energy barriers of 50-70 kcal mol-1, achieving product yields up to 50% within reaction times as short as five minutes. The methodology is environmentally friendly, leveraging standard glass capillaries and p-xylene as a solvent. The significance of high-temperature synthesis lies in its simplicity, efficiency, and ability to address the limitations of traditional methods in solution chemistry. Kinetic studies and DFT calculations validate the experimental findings and provide insights into the reaction mechanism. The method holds broad appeal due to its potential to access diverse compounds relevant to pharmaceuticals, agrochemicals, and materials science. By expanding the scope of accessible reactions, this exploration of experimental possibilities opens a new frontier in synthetic chemistry, enabling the exploration of previously inaccessible transformations. This study establishes a new direction for further innovations in organic synthesis, fostering advancements in both fundamental research and practical applications.
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Affiliation(s)
- Ruslan R Shaydullin
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences Moscow 119991 Russia https://AnanikovLab.ru
| | - Alexey S Galushko
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences Moscow 119991 Russia https://AnanikovLab.ru
| | - Valentina V Ilyushenkova
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences Moscow 119991 Russia https://AnanikovLab.ru
| | - Yulia S Vlasova
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences Moscow 119991 Russia https://AnanikovLab.ru
| | - Valentine P Ananikov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences Moscow 119991 Russia https://AnanikovLab.ru
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13
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Wu FP, Tyler JL, Glorius F. Diversity-Generating Skeletal Editing Transformations. Acc Chem Res 2025; 58:893-906. [PMID: 40042370 DOI: 10.1021/acs.accounts.4c00820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
ConspectusSkeletal editing, as a synthetic tool, offers the unique potential to selectively and efficiently modify the core skeleton of a target molecule at a late-stage. The main benefit of such transformations is the rapid exploration of the chemical space around lead compounds without necessitating a de novo synthesis for each new molecule. However, many skeletal editing transformations are inherently restricted to generating a single product from a single starting compound, limiting the potential for diversification, a concept central to expediting structure-activity relationship (SAR) investigations. In this Account, we describe our efforts to develop novel skeletal editing transformations in which a modification to the central motif of a molecule is performed simultaneously with the incorporation of additional functionality that can be easily varied through a judicious choice of the reagents. Specifically, we successfully developed an α-iodonium diazo-based carbynyl radical equivalent reagent that, under photoredox conditions, could facilitate the ring-expansion of indene scaffolds while enabling the insertion of over ten different functionalized carbon atoms into the corresponding naphthalene products. This concept was later extended to the design of an atomic carbon equivalent reagent that could promote mild and selective Ciamician-Dennstedt-type indole ring-expansion reactions, while simultaneously installing an oxime ester handle that could undergo further functionalization. Furthermore, we highlight recent work from our group on multiple-atom insertion reactions, namely, the development of a photocatalyzed De Mayo reaction for the ring-expansion of cyclic ketones and a photocatalyzed dearomative ring-expansion of thiophenes via small-ring insertion. In both of these cases, multiple products can be potentially accessed from a single starting material upon variation of the insertion reagent. The diversity-generating skeletal editing strategy could also be applied to single-atom transmutation, as demonstrated by the development of a nitrogen-to-functionalized carbon atom transmutation reaction to convert pyridine to benzene rings. Here, the desired transformation was achieved via a sequence of pyridine ring-opening, Horner-Wadsworth-Emmons (HWE) olefination, and ring-closure, with a judicious choice of the HWE reagent allowing the installation of a wide variety of versatile functional groups. Finally, an energy transfer-mediated quinoline ring-contraction is discussed, specifically with reference to the ways in which it does and does not fit the criteria of a skeletal editing reaction. Although formal atom deletion transformations are typically restricted to single products from each discrete substrate, this [2 + 2] cycloaddition/rearrangement cascade also involves the incorporation of an alkene into the molecule and introduces a point of variation that can be exploited for diversity generation. We hope to not only highlight the transformations reported herein but also inspire further research into this synthetic strategy to access new classes of skeletal editing transformations that, through rapid diversity generation, provide the potential to expedite SAR investigations.
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Affiliation(s)
- Fu-Peng Wu
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
| | - Jasper L Tyler
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, University of Münster, 48149 Münster, Germany
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14
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Lu H, Chang J, Wei H. Transition Metal-Catalyzed Nitrogen Atom Insertion into Carbocycles. Acc Chem Res 2025; 58:933-946. [PMID: 40008653 DOI: 10.1021/acs.accounts.4c00854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2025]
Abstract
ConspectusN-Heterocycles are essential in pharmaceutical engineering, materials science, and synthetic chemistry. Recently, skeletal editing, which involves making specific point changes to the core of a molecule through single-atom insertion, deletion, or transmutation, has gained attention for its potential to modify complex substrates. In this context, the insertion of nitrogen atoms into carbocycles to form N-heterocycles has emerged as a significant research focus in modern synthetic chemistry owing to its novel synthetic logic. This distinctive retrosynthetic approach enables late-stage modification of molecular skeletons and provides a different pathway for synthesizing multiply substituted N-heterocycles. Nevertheless, nitrogen atom insertion into carbocycles has proven challenging because of the inherent inertness of carbon-based skeletons and difficulty in cleaving C-C bonds. Therefore, selective insertion of nitrogen atoms for skeletal editing remains a challenging and growing field in synthetic chemistry. This Account primarily highlights the contributions of our laboratory to this active field and acknowledges the key contributions from other researchers. It is organized into two sections based on the type of the carbocycle. The first section explores the insertion of nitrogen atoms into cycloalkenes. Recent Co-catalyzed oxidative azidation strategies have enabled nitrogen atom insertion into cyclobutenes, cyclopentenes, and cyclohexenes, facilitating the synthesis of polysubstituted pyridines, which has been conventionally challenging through pyridine cross-coupling. The subsequent section highlights our discovery in the realm of nitrogen atom insertion into arenes. The site-selective skeletal editing of stable arenes is challenging in synthetic chemistry. We developed a method for the intramolecular insertion of nitrogen atoms into the benzene rings of 2-amino biaryls by suppressing the competing C-H insertion process by using a paddlewheel dirhodium catalyst. In addition, to address the challenging site-selective issues in nitrogen atom insertion, we employed arenols as substrates, which could act as selective controlling elements in site-selective skeletal editing. We reported a Cu-catalyzed nitrogen atom insertion into arenols, which proceeds through a dearomative azidation/aryl migration process, enabling the site-selective incorporation of nitrogen atoms into arenes. Inspired by this result, we recently extended the reaction model by using a Fe-catalyst to facilitate the ring contraction of the nitrogen-inserted product, achieving the carbon-to-nitrogen transmutation of arenols. Various complex polyaromatic arenols could effectively undergo the desired atom's transmutation, presenting considerable potential for various applications in materials chemistry. In this Account, we present an overview of our achievements in nitrogen atom insertion reactions, with a focus on the reaction scopes, mechanistic features, and synthetic applications. We anticipate that this Account will provide valuable insights and propel the development of innovative methodologies in both skeletal editing and N-heterocycle synthesis.
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Affiliation(s)
- Hong Lu
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Jie Chang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
| | - Hao Wei
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an 710069, China
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15
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Kumar S, Gopalakrishnan DK, Shrotriya S, Karmakar T, Vaitla J. Ylide-Induced Ring Contraction of Coumarins to Benzofurans: Applications to the Synthesis of Bis-Heterocycles. Org Lett 2025; 27:1878-1883. [PMID: 39954264 DOI: 10.1021/acs.orglett.5c00079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2025]
Abstract
We report an unusual ring contraction of 4-chlorocoumarin to benzofuranoyl sulfoxonium ylides using a Corey-ylide. These stabilized ylides were subsequently utilized for the synthesis of various valuable bis-heterocycles under both metal and metal-free conditions. The synthetic utility of this method is illustrated through the synthesis of known bioactive compounds. Detailed mechanistic investigations and quantum chemical calculations have provided valuable insights into the mechanism of the ring contraction reaction.
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Affiliation(s)
- Sandeep Kumar
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
| | | | - Shashank Shrotriya
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
| | - Tarak Karmakar
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
| | - Janakiram Vaitla
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India
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16
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Bro FS, Laraia L. Unifying principles for the design and evaluation of natural product-inspired compound collections. Chem Sci 2025; 16:2961-2979. [PMID: 39906386 PMCID: PMC11788825 DOI: 10.1039/d4sc08017c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Accepted: 01/24/2025] [Indexed: 02/06/2025] Open
Abstract
Natural products play a major role in the discovery of novel bioactive compounds. In this regard, the synthesis of natural product-inspired and -derived analogues is an active field that is further developing. Several strategies and principles for the design of such compounds have been developed to streamline their access and synthesis. This perspective describes how individual strategies or their elements can be combined depending on the project goal. Illustrative examples are shown that demonstrate the blurred lines between approaches and how they can work in concert to discover new biologically active molecules. Lastly, a general set of guidelines for choosing an appropriate strategy combination for the specific purpose is presented.
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Affiliation(s)
- Frederik Simonsen Bro
- Department of Chemistry, Technical University of Denmark 2800 Kongens Lyngby Denmark
| | - Luca Laraia
- Department of Chemistry, Technical University of Denmark 2800 Kongens Lyngby Denmark
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17
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Wang Y, Hua X, Li Y, Zhang Z, Lin Y, Guo W, Zheng L. Controllable Molecular Editing of 2-Amino- N-substituted Benzamides: Site-selective Synthesis of 6-Selenylated N-Substituted 1,2,3-Benzotriazine-4(3 H)-ones. Org Lett 2025. [PMID: 39899690 DOI: 10.1021/acs.orglett.4c04783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2025]
Abstract
We present an efficient silver-catalyzed one-pot controllable molecular editing protocol for the transformation of 2-amino-N-substituted benzamides into 6-selenylated N-substituted 1,2,3-benzotriazine-4(3H)-ones under mild reaction conditions. This three-component reaction strategy is achieved by building N-N/N═N/C-Se bonds, which provides a practical pathway for the preparation of selenylated 1,2,3-benzotriazine-4(3H)-ones with a broad substrate scope and good functional group tolerance, as well as high site-selectivity. Mechanistic experiments suggest that this reaction proceeds via intermolecular site-selective C-H selenylation of 2-amino-N-substituted benzamides with readily available diselenides, followed by annulation of selenylated 2-amino-N-substituted benzamides using AgNO3 as the nitrogen synthon.
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Affiliation(s)
- Yatang Wang
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Xiaofeng Hua
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Yinyin Li
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Zhiying Zhang
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Yinyun Lin
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Wei Guo
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
| | - Lvyin Zheng
- Jiangxi Provincial Key Laboratory of Synthetic Pharmaceutical Chemistry, Gannan Normal University, Ganzhou 341000, China
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18
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Zhang X, Song Q, Liu S, Sivaguru P, Liu Z, Yang Y, Ning Y, Anderson EA, de Ruiter G, Bi X. Asymmetric dearomative single-atom skeletal editing of indoles and pyrroles. Nat Chem 2025; 17:215-225. [PMID: 39609530 DOI: 10.1038/s41557-024-01680-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 10/23/2024] [Indexed: 11/30/2024]
Abstract
Heterocycle skeletal editing has recently emerged as a powerful tactic for achieving heterocycle-to-heterocycle transmutation without the need for multistep de novo heterocycle synthesis. However, the enantioselective skeletal editing of heteroarenes through single-atom logic remains challenging. Here we report the enantiodivergent dearomative skeletal editing of indoles and pyrroles via an asymmetric carbon-atom insertion, using trifluoromethyl N-triftosylhydrazones as carbene precursors. This strategy provides a straightforward methodology to access enantiomerically enriched six-membered N-heterocycles containing a trifluoromethylated quaternary stereocentre from planar N-heteroarenes. The synthetic utility of this enantiodivergent methodology was demonstrated by a broad evaluation of reaction scope, product derivatization and concise syntheses of drug analogues. Mechanistic studies reveal that the excellent asymmetric induction arises from the initial cyclopropanation step. The asymmetric single-atom insertion strategy is expected to have a broad impact on the field of single-atom skeletal editing and catalytic asymmetric dearomatization of aromatic compounds.
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Affiliation(s)
- Xiaolong Zhang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Shaopeng Liu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | | | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, China.
| | - Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Yongyue Ning
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Edward A Anderson
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, China.
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, China.
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19
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Fan M, Jiang X, Wang R, Pan L, Qi X, Song S, Wang Y, Zhang Q. One-Step Realization of Skeleton Editing, gem-Dinitromethyl Functionalization, and Zwitterionization in a Laser-Sensitive 1,3,4-Oxadiazole Energetic Molecule. Org Lett 2025; 27:840-845. [PMID: 39812076 DOI: 10.1021/acs.orglett.4c04504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
Abstract
The single-atom skeletal editing technology is an efficient method for constructing molecular skeletons, which has broad coverage in synthetic chemistry. However, its potential in the preparation of energetic heterocyclic molecules is grossly underexplored. In this work, an unexpected one-step reaction for the synthesis of novel energetic molecules was discovered which combines single-atom skeletal editing, gem-dinitromethyl functionalization, and zwitterionization in one step. The reaction demonstrates high efficiency while maintaining the characteristics of being mild and facile. The reaction mechanism was verified by experimental evidence and theoretical calculations. This reaction produces a novel energetic molecule (NPX-04) with good laser ignition performance, indicating its promise as a laser-sensitive energetic material.
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Affiliation(s)
- Mingren Fan
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Xiu'e Jiang
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Ruihui Wang
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Linhu Pan
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Xiujuan Qi
- School of Chemistry and Chemical Engineering, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Siwei Song
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Yi Wang
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
| | - Qinghua Zhang
- School of Astronautics, Northwestern Polytechnical University, Xi'an, Shaanxi 710065, China
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20
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Kim SF, Liles JP, Lux MC, Park H, Jurczyk J, Soda Y, Yeung CS, Sigman MS, Sarpong R. Interrogation of Enantioselectivity in the Photomediated Ring Contractions of Saturated Heterocycles. J Am Chem Soc 2025; 147:1851-1866. [PMID: 39746148 PMCID: PMC12081160 DOI: 10.1021/jacs.4c13999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2025]
Abstract
We recently reported a chiral phosphoric acid (CPA) catalyzed enantioselective photomediated ring contraction of piperidines and other saturated heterocycles. By extruding a single heteroatom from a ring, this transformation builds desirable C(sp3)-C(sp3) bonds in the ring contracted products; however, the origins of enantioselectivity remain poorly understood. In this work, enantioselectivity of the ring contraction has been explored across an expanded structurally diverse substrate scope, revealing a wide range of enantioselectivities (0-99%) using two distinct CPA catalysts. Mechanistic investigations support rate-determining excitation that generates short-lived achiral intermediates that are intercepted by the CPA in an enantiodetermining ring closure. The effects of competitive uncatalyzed reactivity and light-driven reversibility of the enantiodetermining ring closure on enantioselectivity have been elucidated. Statistical models were built by regressing the range of enantioselectivities from the substrate scope against key structural features of the products for both CPA catalysts. The resultant models suggested distinct factors that influence the enantioselectivity response for each catalyst and enabled rational modification of a pharmaceutically relevant target molecule to improve enantioselectivity. Finally, density functional theory (DFT)-based transition state analysis identified distinct noncovalent interactions with each catalyst that correlated with the unique selectivity-relevant features uncovered through statistical modeling. Our findings not only offer comprehensive insight into the origins of enantioselectivity in this system but should also aid future development of related photomediated CPA-catalyzed reactions.
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Affiliation(s)
- Sojung F. Kim
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Jordan P. Liles
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Michaelyn C. Lux
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States; Present Address: Pfizer Research & Development, Cambridge, Massachusetts 02139, United States
| | - Hojoon Park
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Justin Jurczyk
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States; Present Address: Gilead Sciences, Inc., 333 Lakeside Drive, Foster City, California 94404, United States
| | - Yasuki Soda
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States; Present Address: Gilead Sciences, Inc., 333 Lakeside Drive, Foster City, California 94404, United States; Present Address: The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Charles S. Yeung
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Matthew S. Sigman
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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21
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Ghosh B, Kafle P, Mukherjee R, Welles R, Herndon D, Nicholas KM, Shao Y, Sharma I. Sulfenylnitrene-mediated nitrogen-atom insertion for late-stage skeletal editing of N-heterocycles. Science 2025; 387:102-107. [PMID: 39745963 DOI: 10.1126/science.adp0974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 09/26/2024] [Accepted: 11/19/2024] [Indexed: 01/04/2025]
Abstract
Given the prevalence of nitrogen-containing heterocycles in commercial drugs, selectively incorporating a single nitrogen atom is a promising scaffold hopping approach to enhance chemical diversity in drug discovery libraries. We harness the distinct reactivity of sulfenylnitrenes, which insert a single nitrogen atom to transform readily available pyrroles, indoles, and imidazoles into synthetically challenging pyrimidines, quinazolines, and triazines, respectively. Our additive-free method for skeletal editing employs easily accessible, benchtop-stable sulfenylnitrene precursors over a broad temperature range (-30 to 150°C). This approach is compatible with diverse functional groups, including oxidation-sensitive functionalities such as phenols and thioethers, and has been applied to various natural products, amino acids, and pharmaceuticals. Furthermore, we have conducted mechanistic studies and explored regioselectivity outcomes through density functional theory calculations.
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Affiliation(s)
- Bidhan Ghosh
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Prakash Kafle
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Rishav Mukherjee
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Randall Welles
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Deacon Herndon
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Kenneth M Nicholas
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Yihan Shao
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
| | - Indrajeet Sharma
- Department of Chemistry and Biochemistry, University of Oklahoma, 101 Stephenson Parkway, Norman, OK, USA
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22
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Zhou Y, Lei SG, Abudureheman B, Wang LS, Yu ZC, Xiang JC, Wu AX. Transforming an azaarene into the spine of fusedbicyclics via cycloaddition-induced scaffold hopping of 5-Hydroxypyrazoles. Nat Commun 2024; 15:10907. [PMID: 39738133 DOI: 10.1038/s41467-024-55312-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 12/05/2024] [Indexed: 01/01/2025] Open
Abstract
Skeleton editing for heteroarenes, especially pyrazoles, is challenging and remains scarce because these non-strained aromatics exhibit inert reactivities, making them relatively inactive for performing a dearomatization/cleavage sequence. Here, we disclose a cycloaddition-induced scaffold hopping of 5-hydroxypyrazoles to access the pyrazolopyridopyridazin-6-one skeleton through a single-operation protocol. By converting a five-membered aza-arene into a five-unit spine of a 6/6 fused-bicyclic, this work unlocks a ring-opening reactivity of the pyrazole core that involves a formal C = N bond cleavage while retaining the highly reactive N-N bond in the resulting product. A [4 + 2] cycloaddition of a temporarily dearomatized 5-hydroxypyrrole with an in situ generated aza-1,3-diene, followed by oxidative C-N bond cleavage, constitutes the domino pathway. A library of pyrazolopyridopyridazin-6-ones, which are medicinally relevant nitrogen-atom-rich tricyclics, is obtained efficiently from readily available materials.
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Affiliation(s)
- You Zhou
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China
| | - Shuang-Gui Lei
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China
| | - Baihetiguli Abudureheman
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China
| | - Li-Sheng Wang
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China
| | - Zhi-Cheng Yu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China
| | - Jia-Chen Xiang
- School of Chemistry and Chemical Engineering, Southeast University, Nanjing, P.R. China.
| | - An-Xin Wu
- National Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan, P.R. China.
- State Key Laboratory of Applied Organic Chemistry, Lanzhou University, Lanzhou, P. R. China.
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23
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Banik S, Kumar N, Ghule VD, Dharavath S. Skeletal Editing of Energetic Materials: Acid-Catalyzed One-Step Synthesis of Bridged Triazoles as High-Energy-Density Materials via the Nef Reaction. ACS APPLIED MATERIALS & INTERFACES 2024; 16:64929-64939. [PMID: 39535909 DOI: 10.1021/acsami.4c16858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
Thermally stable insensitive energetic materials have captivated significant attention from the global research community due to their potential impact. In this study, a series of symmetric and asymmetric nitromethyl-bridged triazole compounds were synthesized from pyrimidine moieties via a skeletal editing approach. Additionally, carbonyl-bridged compounds were synthesized in a single step by using acid-catalyzed Nef reactions from their nitromethyl precursors. Peripheral modifications of pyrimidine resulted in fused energetic moieties. All synthesized compounds were fully characterized by using infrared spectroscopy, high-resolution mass spectrometry, multinuclear magnetic resonance spectroscopy, elemental analysis, and differential scanning calorimetry. Single-crystal X-ray diffraction analysis confirmed the structures of compounds 4 and 10. The newly synthesized moieties exhibit densities ranging from 1.75 to 1.86 g cm-3, detonation velocities between 8044 and 8608 m s-1, and detonation pressures between 23.10 and 30.31 GPa. Notably, compounds 9 and 10 demonstrate exceptional heat resistance, with decomposition temperatures of 315 and 335 °C, respectively. Computational studies, including density functional theory, quantum theory of atoms in molecules, noncovalent interactions, and electrostatic surface potential analysis, account for hydrogen-bonding and noncovalent interactions. This work highlights the potential of skeletal editing in the development of high-performing, thermally stable energetic materials.
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Affiliation(s)
- Shreyasi Banik
- Energetic Materials Laboratory, Department of Chemistry, Indian Institute of Technology (IIT) Kanpur, Kanpur 208016, Uttar Pradesh, India
| | - Navaneet Kumar
- Energetic Materials Laboratory, Department of Chemistry, Indian Institute of Technology (IIT) Kanpur, Kanpur 208016, Uttar Pradesh, India
| | - Vikas D Ghule
- Department of Chemistry, National Institute of Technology Kurukshetra, Kurukshetra 136119, Haryana, India
| | - Srinivas Dharavath
- Energetic Materials Laboratory, Department of Chemistry, Indian Institute of Technology (IIT) Kanpur, Kanpur 208016, Uttar Pradesh, India
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24
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Ren C, Han B, Guo H, Yang W, Xia C, Jin XH, Wang F, Wu L. Skeletal Editing of Aromatic N-Heterocycles via Hydroborative Cleavage of C-N Bonds-Scope, Mechanism, and Property. Angew Chem Int Ed Engl 2024; 63:e202407222. [PMID: 39166361 DOI: 10.1002/anie.202407222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 08/19/2024] [Accepted: 08/20/2024] [Indexed: 08/22/2024]
Abstract
Skeletal editing of the core structure of heterocycles offers new opportunities for chemical construction and is a promising yet challenging research topic that has recently gained increasing interest. However, several limitations of the reported systems remain to be addressed. For example, the reagents employed are generally in high-energy, such as chlorocarbene precursors, nitrene species, and metal carbenes, which are also associated with low atomic efficiencies. Thus, the development of simple systems for the skeletal editing of heterocycles is still desired. Herein, a straightforward and facile BH3-mediated skeletal editing of readily available indoles, benzimidazoles, and several other aromatic heterocycles is reported. Structurally diverse products were readily obtained, including tetrahydrobenzo azaborinines, diazaboroles, O-anilinophenylethyl alcohols, benzene-1,2-diamines, and more. Density functional theory (DFT) calculations and natural bond orbital (NBO) analysis revealed a BH3-induced C-N bond cleavage reaction pathway. An exciting and counterintuitive indole hydroboration phenomenon of -BH2 shift from C3-position to C2-position was disclosed. Moreover, the photophysical properties of the synthesized diazaboroles were studied, and an interestingly and pronounced aggregation-induced emission (AIE) behavior was disclosed.
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Affiliation(s)
- Chunping Ren
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
| | - Bo Han
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
- University of Chinese Academy of Sciences, 100049, Beijing, P. R. China
| | - Hui Guo
- Key Laboratory of Cluster Science of Ministry of Education, Beijing Key Laboratory of Photoelectronic/Electrophotonic Conversion Materials, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, 100081, Beijing, P. R. China
| | - Wendi Yang
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
- University of Chinese Academy of Sciences, 100049, Beijing, P. R. China
| | - Chungu Xia
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
| | - Xu-Hui Jin
- Key Laboratory of Cluster Science of Ministry of Education, Beijing Key Laboratory of Photoelectronic/Electrophotonic Conversion Materials, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, 100081, Beijing, P. R. China
| | - Fang Wang
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
| | - Lipeng Wu
- State Key Laboratory for Oxo Synthesis and Selective Oxidation, Lanzhou Institute of Chemical Physics (LICP), Chinese Academy of Sciences, 730000, Lanzhou, P. R. China
- College of Material Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology, Ministry of Education, Hangzhou Normal University, 311121, Hangzhou, P. R. China
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25
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Liu S, Yang Y, Song Q, Liu Z, Sivaguru P, Zhang Y, de Ruiter G, Anderson EA, Bi X. Halogencarbene-free Ciamician-Dennstedt single-atom skeletal editing. Nat Commun 2024; 15:9998. [PMID: 39557879 PMCID: PMC11574194 DOI: 10.1038/s41467-024-54379-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 11/10/2024] [Indexed: 11/20/2024] Open
Abstract
Single-atom skeletal editing is an increasingly powerful tool for scaffold hopping-based drug discovery. However, the insertion of a functionalized carbon atom into heteroarenes remains rare, especially when performed in complex chemical settings. Despite more than a century of research, Ciamician-Dennstedt (C-D) rearrangement remains limited to halocarbene precursors. Herein, we report a general methodology for the Ciamician-Dennstedt reaction using α-halogen-free carbenes generated in situ from N-triftosylhydrazones. This one-pot, two-step protocol enables the insertion of various carbenes, including those previously unexplored in C-D skeletal editing chemistry, into indoles/pyrroles scaffolds to access 3-functionalized quinolines/pyridines. Mechanistic studies reveal a pathway involving the intermediacy of a 1,4-dihydroquinoline intermediate, which could undergo oxidative aromatization or defluorinative aromatization to form different carbon-atom insertion products.
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Affiliation(s)
- Shaopeng Liu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, China.
| | | | - Yifan Zhang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technology, Haifa, Israel
| | - Edward A Anderson
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford, UK.
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, China.
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, China.
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26
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Zhou X, Zhuo Q, Shima T, Kang X, Hou Z. Denitrogenative Ring-Contraction of Pyridines to a Cyclopentadienyl Skeleton at a Dititanium Hydride Framework. J Am Chem Soc 2024; 146:31348-31355. [PMID: 39481038 DOI: 10.1021/jacs.4c13439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2024]
Abstract
Selective removal of the nitrogen atom from an aromatic N-heterocycle, such as pyridine, is of significant interest and importance, yet it remains highly challenging. Here, we report an unprecedented denitrogenative ring-contraction reaction of pyridines at a dititanium hydride framework, yielding cyclopentadienyl and nitride species under mild conditions. The reaction of pyridine with a dititanium tetrahydride complex (1) bearing rigid acridane-based PNP-pincer ligands at room temperature produced a cyclopentadienyl/nitride complex (2), in which the two Ti atoms are bridged by a nitride atom and one Ti atom is bonded to a cyclopentadienyl group formed by pyridine denitrogenation and ring-contraction. The reactions of 2-, 3-, and 4-methylpyridines with 1 under similar conditions yielded the same product (3), a methylcyclopentadienyl-ligated analog of 2. When 2,4- or 3,5-dimethylpyridine reacted with 1 at 60 °C, the 1,3-dimethylcyclopentadienyl-ligated analog (5) formed almost quantitatively. The mechanistic details have been elucidated by isolation of key intermediates and density functional theory calculations. It was revealed that the reaction proceeded via coordination of the N atom of a pyridine unit to a Ti atom in 1 followed by H2 release, C═N reduction, two C-N bond cleavage (ring-opening and denitrogenation), and C-C coupling (ring closing). The involvement of C-H activation in an isopropyl group of a PNP ligand at the later stages of the reaction significantly contributed to the stabilization of the denitrogenative ring-contraction product. This work not only provides unprecedented mechanistic insights into denitrogenation of aromatic N-heterocycles but also represents a novel example of skeletal editing of aromatic N-heterocycles.
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Affiliation(s)
- Xiaoxi Zhou
- Organometallic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Qingde Zhuo
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Takanori Shima
- Organometallic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Xiaohui Kang
- College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Zhaomin Hou
- Organometallic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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27
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Qin Q, Zhang L, Wei J, Qiu X, Hao S, An XD, Jiao N. Direct oxygen insertion into C-C bond of styrenes with air. Nat Commun 2024; 15:9015. [PMID: 39424824 PMCID: PMC11489579 DOI: 10.1038/s41467-024-53266-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 10/08/2024] [Indexed: 10/21/2024] Open
Abstract
Skeletal editing of single-atom insertion to basic chemicals has been demonstrated as an efficient strategy for the discovery of structurally diversified compounds. Previous endeavors in skeletal editing have successfully facilitated the insertion of boron, nitrogen, and carbon atoms. Given the prevalence of oxygen atoms in biologically active molecules, the direct oxygenation of C-C bonds through single-oxygen-atom insertion like Baeyer-Villiger reaction is of particular significance. Herein, we present an approach for the skeletal modification of styrenes using O2 via oxygen insertion, resulting in the formation of aryl ether frameworks under mild reaction conditions. The broad functional-group tolerance and the excellent chemo- and regioselectivity are demonstrated in this protocol. A preliminary mechanistic study indicates the potential involvement of 1,2-aryl radical migration in this reaction.
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Affiliation(s)
- Qixue Qin
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China.
| | - Liang Zhang
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Jialiang Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China
| | - Xu Qiu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China
| | - Shuanghong Hao
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Xiao-De An
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Chang Cheng Rd. 700, Qingdao, Shandong, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Chemical Biology Center, Peking University, Beijing, China.
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28
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Berl JK, Czaschke C, Pramor AK, Stark CBW, Thiem J. Serendipitous Conversion of an Acetylamino Dideoxy-Octonic Acid Derivate into a Functionalized Carbohydrate-Pyrazole Conjugate and Investigation of the Method´s General Applicability. Molecules 2024; 29:4885. [PMID: 39459253 PMCID: PMC11509885 DOI: 10.3390/molecules29204885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 10/02/2024] [Accepted: 10/08/2024] [Indexed: 10/28/2024] Open
Abstract
By treatment of the peracetylated methylester of 4-acetylamino-2,4-dideoxy-d-glycero-d-galacto-octonic acid (ADOA-PAE) with nitrosyl tetrafluoroborate, a serendipitous formation of a highly functionalized carbohydrate-pyrazole conjugate was observed in 95% yield. This observation is remarkable, as it involves a five-step one-pot synthesis that proceeds via an 1,3-acyl shift and a 1,5-electrocyclization, which usually requires thermal conditions; however, the reaction occurred at a temperature of 0 °C. Additionally, the excellent yield of the carbohydrate-decorated pyrazole and the regiospecificity of the cyclization are of particular interest, as regioselectivity is always a challenge in pyrazole synthesis. Subsequently, this novel access to pyrazoles starting from N-acetyl-allyl amides via nitrosation and electrocyclization was investigated. In addition, mechanistic studies for the formation of substituted pyrazoles of type were carried out.
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Affiliation(s)
| | | | | | - Christian B. W. Stark
- Department of Chemistry, Institute for Organic Chemistry, University of Hamburg, Martin-Luther-King-Platz 6, D-20146 Hamburg, Germany; (J.K.B.); (C.C.); (A.-K.P.)
| | - Joachim Thiem
- Department of Chemistry, Institute for Organic Chemistry, University of Hamburg, Martin-Luther-King-Platz 6, D-20146 Hamburg, Germany; (J.K.B.); (C.C.); (A.-K.P.)
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29
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Gupta A, Bhatti P, Laha JK, Manna S. Skeletal Editing by Hypervalent Iodine Mediated Nitrogen Insertion. Chemistry 2024; 30:e202401993. [PMID: 39046292 DOI: 10.1002/chem.202401993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 07/23/2024] [Accepted: 07/24/2024] [Indexed: 07/25/2024]
Abstract
Hypervalent iodine reagents are versatile and readily accessible reagents that have been extensively applied in contemporary synthesis in modern organic chemistry. Among them, iodonitrene (ArI=NR), is a powerful reactive species, widely used for a single-nitrogen-atom insertion reaction, and skeletal editing to construct N-heterocycles. Skeletal editing with reactive iodonitrene components has recently emerged as an exciting approach in modern chemical transformation. These reagents have been extensively used to produce biologically relevant heterocycles and functionalized molecular architectures. Recently, the insertion of a nitrogen-atom into hydrocarbons to generate N-heterocyclic compounds using hypervalent iodine reagents has been a significant focus in the field of molecular editing reactions. In this review, we discuss the rapidly emerging field of nitrene insertion, including skeletal editing and nitrogen insertion, using hypervalent iodine reagents to access nitrogen-containing heterocycles, and the current mechanistic understanding of these processes.
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Affiliation(s)
- Anjali Gupta
- Department of Pharmaceutical Technology (Process Chemistry), National Institute of Pharmaceutical Education and Research, Sector-67, S. A. S. Nagar, Punjab, 160062, India
| | - Pratibha Bhatti
- Department of Pharmaceutical Technology (Process Chemistry), National Institute of Pharmaceutical Education and Research, Sector-67, S. A. S. Nagar, Punjab, 160062, India
| | - Joydev K Laha
- Department of Pharmaceutical Technology (Process Chemistry), National Institute of Pharmaceutical Education and Research, Sector-67, S. A. S. Nagar, Punjab, 160062, India
| | - Srimanta Manna
- Department of Pharmaceutical Technology (Process Chemistry), National Institute of Pharmaceutical Education and Research, Sector-67, S. A. S. Nagar, Punjab, 160062, India
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30
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Zhang BS, Homölle SL, Bauch T, Oliveira JCA, Warratz S, Yuan B, Gou XY, Ackermann L. Electrochemical Skeletal Indole Editing via Nitrogen Atom Insertion by Sustainable Oxygen Reduction Reaction. Angew Chem Int Ed Engl 2024; 63:e202407384. [PMID: 38959168 DOI: 10.1002/anie.202407384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 07/01/2024] [Accepted: 07/01/2024] [Indexed: 07/05/2024]
Abstract
Skeletal molecular editing gained considerable recent momentum and emerged as a uniquely powerful tool for late-stage diversifications. Thus far, superstoichiometric amounts of costly hypervalent iodine(III) reagents were largely required for skeletal indole editing. In contrast, we herein show that electricity enables sustainable nitrogen atom insertion reactions to give bio-relevant quinazoline scaffolds without stoichiometric chemical redox-waste product. The transition metal-free electro-editing was enabled by the oxygen reduction reaction (ORR) and proved robust on scale, while tolerating a variety of valuable functional groups.
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Affiliation(s)
- Bo-Sheng Zhang
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Simon L Homölle
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Tristan Bauch
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - João C A Oliveira
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Svenja Warratz
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Binbin Yuan
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Xue-Ya Gou
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
| | - Lutz Ackermann
- Wöhler-Research Institute for Sustainable Chemistry (WISCh), Georg-August-Universität, Tammannstrasse 2, 37077, Göttingen, Germany
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31
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Peng Y, Wang G, Klare HFT, Oestreich M. Ring Contraction of Saturated Cyclic Amines and Rearrangement of Acyclic Amines Through Their Corresponding Hydroxylamines. Angew Chem Int Ed Engl 2024; 63:e202410483. [PMID: 38953245 DOI: 10.1002/anie.202410483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 06/24/2024] [Accepted: 07/02/2024] [Indexed: 07/03/2024]
Abstract
Compared to modifications at the molecular periphery, skeletal adjustments present greater challenges. Within this context, skeletal rearrangement technology stands out for its significant advantages in rapidly achieving structural diversity. Yet, the development of this technology for ring contraction of saturated cyclic amines remains exceedingly rare. While most existing methods rely on specific substitution patterns to achieve ring contraction, there is a persistent demand for a more general strategy for substitution-free cyclic amines. To address this issue, we report a B(C6F5)3-catalyzed skeletal rearrangement of hydroxylamines with hydrosilanes. This methodology, when combined with the N-hydroxylation of amines, enables the regioselective ring contraction of cyclic amines and proves equally effective for rapid reorganization of acyclic amine skeletons. By this, the direct scaffold hopping of drug molecules and the strategic deletion of carbon atoms are achieved in a mild manner. Based on mechanistic experiments and density functional theory calculations, a possible mechanism for this process is proposed.
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Affiliation(s)
- Yi Peng
- Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 115, 10623, Berlin, Germany
| | - Guoqiang Wang
- Institute of Theoretical and Computational Chemistry School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, P.R. China
| | - Hendrik F T Klare
- Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 115, 10623, Berlin, Germany
| | - Martin Oestreich
- Institut für Chemie, Technische Universität Berlin, Strasse des 17. Juni 115, 10623, Berlin, Germany
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32
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Li S, Tang J, Shi Y, Yan M, Fu Y, Su Z, Xu J, Xue W, Zheng X, Ge Y, Li R, Chen H, Fu H. C3 Selective chalcogenation and fluorination of pyridine using classic Zincke imine intermediates. Nat Commun 2024; 15:7420. [PMID: 39198410 PMCID: PMC11358504 DOI: 10.1038/s41467-024-51452-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 08/08/2024] [Indexed: 09/01/2024] Open
Abstract
Regioselective C-H functionalization of pyridines remains a persistent challenge due to their inherent electronically deficient properties. In this report, we present a strategy for the selective pyridine C3-H thiolation, selenylation, and fluorination under mild conditions via classic N-2,4-dinitrophenyl Zincke imine intermediates. Radical inhibition and trapping experiments, as well as DFT theoretical calculations, indicated that the thiolation and selenylation proceeds through a radical addition-elimination pathway, whereas fluorination via a two-electron electrophilic substitution pathway. The pre-installed electron-deficient activating N-DNP group plays a crucial and positive role, with the additional benefit of recyclability. The practicability of this protocol was demonstrated in the gram-scale synthesis and the late-stage modification of pharmaceutically relevant pyridines.
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Affiliation(s)
- Shun Li
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Juan Tang
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Yonglin Shi
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Meixin Yan
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Yihua Fu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Zhishan Su
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Jiaqi Xu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Weichao Xue
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Xueli Zheng
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Yicen Ge
- College of Materials, Chemistry and Chemical Engineering, Chengdu University of Technology, Chengdu, Sichuan, 610059, PR China
| | - Ruixiang Li
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China
| | - Hua Chen
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China.
| | - Haiyan Fu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu, Sichuan, 610064, PR China.
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33
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Wu FP, Lenz M, Suresh A, Gogoi AR, Tyler JL, Daniliuc CG, Gutierrez O, Glorius F. Nitrogen-to-functionalized carbon atom transmutation of pyridine. Chem Sci 2024; 15:d4sc04413d. [PMID: 39246332 PMCID: PMC11372446 DOI: 10.1039/d4sc04413d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Accepted: 08/25/2024] [Indexed: 09/10/2024] Open
Abstract
The targeted and selective replacement of a single atom in an aromatic system represents a powerful strategy for the rapid interconversion of molecular scaffolds. Herein, we report a pyridine-to-benzene transformation via nitrogen-to-carbon skeletal editing. This approach proceeds via a sequence of pyridine ring-opening, imine hydrolysis, olefination, electrocyclization, and aromatization to achieve the desired transmutation. The most notable features of this transformation are the ability to directly install a wide variety of versatile functional groups in the benzene scaffolding, including ester, ketone, amide, nitrile, and phosphate ester fragments, as well as the inclusion of meta-substituted pyridines which have thus far been elusive for related strategies.
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Affiliation(s)
- Fu-Peng Wu
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Madina Lenz
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Adhya Suresh
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Achyut R Gogoi
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Jasper L Tyler
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
| | - Osvaldo Gutierrez
- Department of Chemistry, Texas A&M University 3255 TAMU, 580 Ross St 77843 College Station TX USA
| | - Frank Glorius
- Organisch-Chemisches Institut, Universität Münster Corrensstraße 40 48149 Münster Germany
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34
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Han W, Ren YY, Tang MY, Ji YF, Ge D, Ma M, Shen ZL, Chu XQ. Combining (CH 2O) n and (NH 4) 2CO 3 as a Formamidine Equivalent for "Four-in-One" Synthesis of Fluoroalkylated 2- H-Pyrimidines. Org Lett 2024; 26:7078-7082. [PMID: 39119970 DOI: 10.1021/acs.orglett.4c02785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2024]
Abstract
Multicomponent reactions hold the potential to maximize the synthetic efficiency in the preparation of diverse and complex molecular scaffolds. An unprecedented formal [3+1+1+1] annulation approach for the one-step synthesis of fluoroalkylated 2-H-pyrimidines commencing from perfluoroalkyl alkenes, paraformaldehyde, and ammonium carbonate is described. By harnessing readily accessible (CH2O)n and cheap (NH4)2CO3 as a formamidine surrogate, this method effectively replaces traditionally preformed amidines with a pyrimidine assembly. The multicomponent reaction proceeds in a step-economical, operationally simple, metal-free, and additive-free manner, featuring a broad substrate scope, excellent functional group compatibility, and scalability. The potential for the synthetic elaboration of the obtained 2-H-pyrimidine is further demonstrated in the alkylation and vinylation of its C2 position.
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Affiliation(s)
- Wei Han
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Yuan-Yuan Ren
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Ming-Yao Tang
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Yi-Fan Ji
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Danhua Ge
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Mengtao Ma
- Department of Chemistry and Materials Science, College of Science, Nanjing Forestry University, Nanjing 210037, China
| | - Zhi-Liang Shen
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
| | - Xue-Qiang Chu
- Technical Institute of Fluorochemistry, School of Chemistry and Molecular Engineering, Nanjing Tech University, Nanjing 211816, China
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35
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Li QZ, He MH, Zeng R, Lei YY, Yu ZY, Jiang M, Zhang X, Li JL. Molecular Editing of Ketones through N-Heterocyclic Carbene and Photo Dual Catalysis. J Am Chem Soc 2024; 146:22829-22839. [PMID: 39086019 DOI: 10.1021/jacs.4c08163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
The molecular editing of ketones represents an appealing strategy due to its ability to maximize the structural diversity of ketone compounds in a straightforward manner. However, developing efficient methods for the arbitrary modification of ketonic molecules, particularly those integrated within complex skeletons, remains a significant challenge. Herein, we present a unique strategy for ketone recasting that involves radical acylation of pre-functionalized ketones facilitated by N-heterocyclic carbene and photo dual catalysis. This protocol features excellent substrate tolerance and can be applied to the convergent synthesis and late-stage functionalization of structurally complex bioactive ketones. Mechanistic investigations, including experimental studies and density functional theory (DFT) calculations, shed light on the reaction mechanism and elucidate the basis of the regioselectivity.
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Affiliation(s)
- Qing-Zhu Li
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Mei-Hao He
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Rong Zeng
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Yuan-Yuan Lei
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Zhao-Yuan Yu
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Min Jiang
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Xiang Zhang
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
| | - Jun-Long Li
- Anti-infective Agent Creation Engineering Research Centre of Sichuan Province, Sichuan Industrial Institute of Antibiotics, School of Pharmacy, Chengdu University, Chengdu 610106, China
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36
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Luo J, Zhou Q, Xu Z, Houk KN, Zheng K. Photochemical Skeletal Editing of Pyridines to Bicyclic Pyrazolines and Pyrazoles. J Am Chem Soc 2024; 146:21389-21400. [PMID: 38875215 DOI: 10.1021/jacs.4c03713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2024]
Abstract
We present an efficient one-pot photochemical skeletal editing protocol for the transformation of pyridines into diverse bicyclic pyrazolines and pyrazoles under mild conditions. The method requires no metals, photocatalysts, or additives and allows for the selective removal of specific carbon atoms from pyridines, allowing for unprecedented versatility. Our approach offers a convenient and efficient means for the late-stage modification of complex drug molecules by replacing the core pyridine skeleton. Moreover, we have successfully scaled up this procedure in stop-flow and flow-chemistry systems, showcasing its applicability to intricate transformations such as the Diels-Alder reaction, hydrogenation, [3 + 2] cycloaddition, and Heck reaction. Through control experiments and DFT calculations, we provide insights into the mechanistic underpinnings of this skeletal editing protocol.
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Affiliation(s)
- Jiajing Luo
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610065, China
| | - Qingyang Zhou
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Zhou Xu
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610065, China
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Ke Zheng
- Key Laboratory of Green Chemistry & Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610065, China
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37
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Feng M, Norlöff M, Guichard B, Kealey S, D'Anfray T, Thuéry P, Taran F, Gee A, Feuillastre S, Audisio D. Pyridine-based strategies towards nitrogen isotope exchange and multiple isotope incorporation. Nat Commun 2024; 15:6063. [PMID: 39025881 PMCID: PMC11258231 DOI: 10.1038/s41467-024-50139-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 07/02/2024] [Indexed: 07/20/2024] Open
Abstract
Isotopic labeling is at the core of health and life science applications such as nuclear imaging, metabolomics and plays a central role in drug development. The rapid access to isotopically labeled organic molecules is a sine qua non condition to support these societally vital areas of research. Based on a rationally driven approach, this study presents an innovative solution to access labeled pyridines by a nitrogen isotope exchange reaction based on a Zincke activation strategy. The technology conceptualizes an opportunity in the field of isotope labeling. 15N-labeling of pyridines and other relevant heterocycles such as pyrimidines and isoquinolines showcases on a large set of derivatives, including pharmaceuticals. Finally, we explore a nitrogen-to-carbon exchange strategy in order to access 13C-labeled phenyl derivatives and deuterium labeling of mono-substituted benzene from pyridine-2H5. These results open alternative avenues for multiple isotope labeling on aromatic cores.
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Affiliation(s)
- Minghao Feng
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France
| | - Maylis Norlöff
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France
| | - Benoit Guichard
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France
| | - Steven Kealey
- King's College London, School of Biomedical Engineering and Imaging Sciences, Department of Imaging Chemistry and Biology, 4th Floor Lambeth Wing, St Thomas' Hospital, London, SE1 7EH, UK
| | - Timothée D'Anfray
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France
| | - Pierre Thuéry
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France
| | - Frédéric Taran
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France
| | - Antony Gee
- King's College London, School of Biomedical Engineering and Imaging Sciences, Department of Imaging Chemistry and Biology, 4th Floor Lambeth Wing, St Thomas' Hospital, London, SE1 7EH, UK
| | - Sophie Feuillastre
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France.
| | - Davide Audisio
- Université Paris-Saclay, CEA, Service de Chimie Bio-organique et Marquage, DMTS, F-91191, Gif-sur-Yvette, France.
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38
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Zhang Z, Li Q, Cheng Z, Jiao N, Zhang C. Selective nitrogen insertion into aryl alkanes. Nat Commun 2024; 15:6016. [PMID: 39019881 PMCID: PMC11255249 DOI: 10.1038/s41467-024-50383-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 07/10/2024] [Indexed: 07/19/2024] Open
Abstract
Molecular structure-editing through nitrogen insertion offers more efficient and ingenious pathways for the synthesis of nitrogen-containing compounds, which could benefit the development of synthetic chemistry, pharmaceutical research, and materials science. Substituted amines, especially nitrogen-containing alkyl heterocyclic compounds, are widely found in nature products and drugs. Generally, accessing these compounds requires multiple steps, which could result in low efficiency. In this work, a molecular editing strategy is used to realize the synthesis of nitrogen-containing compounds using aryl alkanes as starting materials. Using derivatives of O-tosylhydroxylamine as the nitrogen source, this method enables precise nitrogen insertion into the Csp2-Csp3 bond of aryl alkanes. Notably, further synthetic applications demonstrate that this method could be used to prepare bioactive molecules with good efficiency and modify the molecular skeleton of drugs. Furthermore, a plausible reaction mechanism involving the transformation of carbocation and imine intermediates has been proposed based on the results of control experiments.
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Affiliation(s)
- Zheng Zhang
- Department of Chemistry, Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China
| | - Qi Li
- Department of Chemistry, Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China
| | - Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, Chemical Biology Center, School of Pharmaceutical Sciences, Peking University, Beijing, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, Chemical Biology Center, School of Pharmaceutical Sciences, Peking University, Beijing, China.
| | - Chun Zhang
- Department of Chemistry, Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China.
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39
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Blackner JJ, Schneider OM, Wong WO, Hall DG. Removing Neighboring Ring Influence in Monocyclic B-OH Diazaborines: Properties and Reactivity as Phenolic Bioisosteres with Dynamic Hydroxy Exchange. J Am Chem Soc 2024; 146:19499-19508. [PMID: 38959009 DOI: 10.1021/jacs.4c06360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
The design of small molecules with unique geometric profiles or molecular connectivity represents an intriguing yet neglected challenge in modern organic synthesis. This challenge is compounded when emphasis is placed on the preparation of new chemotypes that have distinct and practical functions. To expand the structural diversity of boron-containing heterocycles, we report herein the preparation of novel monocyclic hemiboronic acids, diazaborines. These compounds have enabled the study of a pseudoaromatic boranol-containing (B-OH) ring free of influence from an appended aromatic system. Synthetic and spectroscopic studies have provided insight into the aromatic character, Lewis acidic nature, chemical reactivity, and unique ability of the exocyclic B-OH unit to participate in hydroxy exchange, suggesting their use in organocatalysis and as reversible covalent inhibitors. Moreover, density functional theory and nucleus-independent chemical shift calculations reveal that the aromatic character of the boroheterocyclic ring is increased significantly in comparison to known bicyclic benzodiazaborines (naphthoid congeners), consequently leading to attenuated Lewis acidity. Direct structural comparison to a well-established biaryl isostere, 2-phenylphenol, through X-ray crystallographic analysis reveals that N-aryl derivatives are strikingly similar in size and conformation, with attenuated logP values underscoring the value of the polar BNN unit. Their potential application as low-molecular-weight scaffolds in drug discovery is demonstrated through orthogonal diversification and preliminary antifungal evaluation (Candida albicans), which unveiled analogs with low micromolar inhibitory concentration.
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Affiliation(s)
- Jake J Blackner
- Department of Chemistry, University of Alberta, Centennial Centre for Interdisciplinary Science, Edmonton, Alberta T6G 2G2, Canada
| | - Olivia M Schneider
- Department of Chemistry, University of Alberta, Centennial Centre for Interdisciplinary Science, Edmonton, Alberta T6G 2G2, Canada
| | - Warren O Wong
- Department of Chemistry, University of Alberta, Centennial Centre for Interdisciplinary Science, Edmonton, Alberta T6G 2G2, Canada
| | - Dennis G Hall
- Department of Chemistry, University of Alberta, Centennial Centre for Interdisciplinary Science, Edmonton, Alberta T6G 2G2, Canada
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40
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Rentería-Gómez Á, Gutierrez O. Atom-swap chemistry speeds synthesis of compounds for drug discovery. Nature 2024; 631:30-31. [PMID: 38961157 DOI: 10.1038/d41586-024-02017-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
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41
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Uhlenbruck BJH, Josephitis CM, de Lescure L, Paton RS, McNally A. A deconstruction-reconstruction strategy for pyrimidine diversification. Nature 2024; 631:87-93. [PMID: 38697196 PMCID: PMC11421208 DOI: 10.1038/s41586-024-07474-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 04/26/2024] [Indexed: 05/04/2024]
Abstract
Structure-activity relationship (SAR) studies are fundamental to drug and agrochemical development, yet only a few synthetic strategies apply to the nitrogen heteroaromatics frequently encountered in small molecule candidates1-3. Here we present an alternative approach in which we convert pyrimidine-containing compounds into various other nitrogen heteroaromatics. Transforming pyrimidines into their corresponding N-arylpyrimidinium salts enables cleavage into a three-carbon iminoenamine building block, used for various heterocycle-forming reactions. This deconstruction-reconstruction sequence diversifies the initial pyrimidine core and enables access to various heterocycles, such as azoles4. In effect, this approach allows heterocycle formation on complex molecules, resulting in analogues that would be challenging to obtain by other methods. We anticipate that this deconstruction-reconstruction strategy will extend to other heterocycle classes.
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Affiliation(s)
| | | | - Louis de Lescure
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
| | - Robert S Paton
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA.
| | - Andrew McNally
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA.
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42
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Yang Y, Song Q, Sivaguru P, Liu Z, Shi D, Tian T, de Ruiter G, Bi X. Controllable Skeletal and Peripheral Editing of Pyrroles with Vinylcarbenes. Angew Chem Int Ed Engl 2024; 63:e202401359. [PMID: 38597885 DOI: 10.1002/anie.202401359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 03/14/2024] [Accepted: 04/09/2024] [Indexed: 04/11/2024]
Abstract
The skeletal editing of azaarenes through insertion, deletion, or swapping of single atoms has recently gained considerable momentum in chemical synthesis. Here, we describe a practical skeletal editing strategy using vinylcarbenes in situ generated from trifluoromethyl vinyl N-triftosylhydrazones, leading to the first dearomative skeletal editing of pyrroles through carbon-atom insertion. Furthermore, depending on the used catalyst and substrate, three types of peripheral editing reactions of pyrroles are also disclosed: α- or γ-selective C-H insertion, and [3+2] cycloaddition. These controllable molecular editing reactions provide a powerful platform for accessing medicinally relevant CF3-containing N-heterocyclic frameworks, such as 2,5-dihydropyridines, piperidines, azabicyclo[3.3.0]octadienes, and allylated pyrroles from readily available pyrroles. Mechanistic insights from experiments and density functional theory (DFT) calculations shed light on the origin of substrate- or catalyst-controlled chemo- and regioselectivity as well as the reaction mechanism.
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Affiliation(s)
- Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | | | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Dan Shi
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Tian Tian
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
| | - Graham de Ruiter
- Schulich Faculty of Chemistry, Technion-Israel Institute of Technol-ogy Technion City, 3200008, Haifa, Israel
| | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, 130024, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, 300071, China
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43
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Liu S, Yang Y, Song Q, Liu Z, Lu Y, Wang Z, Sivaguru P, Bi X. Tunable molecular editing of indoles with fluoroalkyl carbenes. Nat Chem 2024; 16:988-997. [PMID: 38443494 DOI: 10.1038/s41557-024-01468-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 01/31/2024] [Indexed: 03/07/2024]
Abstract
Building molecular complexity from simple feedstocks through precise peripheral and skeletal modifications is central to modern organic synthesis. Nevertheless, a controllable strategy through which both the core skeleton and the periphery of an aromatic heterocycle can be modified with a common substrate remains elusive, despite its potential to maximize structural diversity and applications. Here we report a carbene-initiated chemodivergent molecular editing of indoles that allows both skeletal and peripheral editing by trapping an electrophilic fluoroalkyl carbene generated in situ from fluoroalkyl N-triftosylhydrazones. A variety of fluorine-containing N-heterocyclic scaffolds have been efficiently achieved through tunable chemoselective editing reactions at the skeleton or periphery of indoles, including one-carbon insertion, C3 gem-difluoroolefination, tandem cyclopropanation and N1 gem-difluoroolefination, and cyclopropanation. The power of this chemodivergent molecular editing strategy has been highlighted through the modification of the skeleton or periphery of natural products in a controllable and chemoselective manner. The reaction mechanism and origins of the chemo- and regioselectivity have been probed by both experimental and theoretical methods.
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Affiliation(s)
- Shaopeng Liu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Yong Yang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Qingmin Song
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Zhaohong Liu
- Department of Chemistry, Northeast Normal University, Changchun, China.
| | - Ying Lu
- Department of Chemistry, Northeast Normal University, Changchun, China
| | - Zhanjing Wang
- Department of Chemistry, Northeast Normal University, Changchun, China
| | | | - Xihe Bi
- Department of Chemistry, Northeast Normal University, Changchun, China.
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin, China.
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44
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Lu H, Zhang Y, Wang XH, Zhang R, Xu PF, Wei H. Carbon-nitrogen transmutation in polycyclic arenol skeletons to access N-heteroarenes. Nat Commun 2024; 15:3772. [PMID: 38704373 PMCID: PMC11069502 DOI: 10.1038/s41467-024-48265-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 04/25/2024] [Indexed: 05/06/2024] Open
Abstract
Developing skeletal editing tools is not a trivial task, and realizing the corresponding single-atom transmutation in a ring system without altering the ring size is even more challenging. Here, we introduce a skeletal editing strategy that enables polycyclic arenols, a highly prevalent motif in bioactive molecules, to be readily converted into N-heteroarenes through carbon-nitrogen transmutation. The reaction features selective nitrogen insertion into the C-C bond of the arenol frameworks by azidative dearomatization and aryl migration, followed by ring-opening, and ring-closing (ANRORC) to achieve carbon-to-nitrogen transmutation in the aromatic framework of the arenol. Using widely available arenols as N-heteroarene precursors, this alternative approach allows the streamlined assembly of complex polycyclic heteroaromatics with broad functional group tolerance. Finally, pertinent transformations of the products, including synthesis complex biheteroarene skeletons, were conducted and exhibited significant potential in materials chemistry.
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Affiliation(s)
- Hong Lu
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710069, China
| | - Yu Zhang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710069, China
| | - Xiu-Hong Wang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710069, China
| | - Ran Zhang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710069, China
| | - Peng-Fei Xu
- State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, China.
| | - Hao Wei
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710069, China.
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45
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Cheng Q, Bhattacharya D, Haring M, Cao H, Mück-Lichtenfeld C, Studer A. Skeletal editing of pyridines through atom-pair swap from CN to CC. Nat Chem 2024; 16:741-748. [PMID: 38238464 PMCID: PMC11087273 DOI: 10.1038/s41557-023-01428-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 12/15/2023] [Indexed: 05/12/2024]
Abstract
Skeletal editing is a straightforward synthetic strategy for precise substitution or rearrangement of atoms in core ring structures of complex molecules; it enables quick diversification of compounds that is not possible by applying peripheral editing strategies. Previously reported skeletal editing of common arenes mainly relies on carbene- or nitrene-type insertion reactions or rearrangements. Although powerful, efficient and applicable to late-stage heteroarene core structure modification, these strategies cannot be used for skeletal editing of pyridines. Here we report the direct skeletal editing of pyridines through atom-pair swap from CN to CC to generate benzenes and naphthalenes in a modular fashion. Specifically, we use sequential dearomatization, cycloaddition and rearomatizing retrocycloaddition reactions in a one-pot sequence to transform the parent pyridines into benzenes and naphthalenes bearing diversified substituents at specific sites, as defined by the cycloaddition reaction components. Applications to late-stage skeletal diversification of pyridine cores in several drugs are demonstrated.
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Affiliation(s)
- Qiang Cheng
- Organisch-Chemisches Institut, Universität Münster, Münster, Germany
- College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, P. R. China
| | | | - Malte Haring
- Organisch-Chemisches Institut, Universität Münster, Münster, Germany
| | - Hui Cao
- Organisch-Chemisches Institut, Universität Münster, Münster, Germany
| | | | - Armido Studer
- Organisch-Chemisches Institut, Universität Münster, Münster, Germany.
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46
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Timmann S, Wu TH, Golz C, Alcarazo M. Reactivity of α-diazo sulfonium salts: rhodium-catalysed ring expansion of indenes to naphthalenes. Chem Sci 2024; 15:5938-5943. [PMID: 38665534 PMCID: PMC11040645 DOI: 10.1039/d4sc01138d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Accepted: 03/11/2024] [Indexed: 04/28/2024] Open
Abstract
In the presence of catalytic amounts of the paddlewheel dirhodium complex Rh2(esp)2, α-diazo dibenzothiophenium salts generate highly electrophilic Rh-coordinated carbenes, which evolve differently depending on their substitution pattern. Keto-moieties directly attached to the azomethinic carbon promote carbene insertion into one of the adjacent C-S bonds, giving rise to highly electrophilic dibenzothiopyrilium salts. This intramolecular pathway is not operative when the carbene carbon bears ester or trifluoromethyl substituents; in fact, these species react with olefins delivering easy to handle cyclopropyl-substituted sulfonium salts. When indenes are the olefins of choice, the initially formed cyclopropyl rings smoothly open with concomitant departure of dibenzothiophene, enabling access to a series of 2-functionalized naphthalenes.
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Affiliation(s)
- Sven Timmann
- Institut für Organische und Biomolekulare Chemie, Georg August Universität Göttingen Tammannstr 2 37077 Göttingen Germany
| | - Tun-Hui Wu
- Institut für Organische und Biomolekulare Chemie, Georg August Universität Göttingen Tammannstr 2 37077 Göttingen Germany
| | - Christopher Golz
- Institut für Organische und Biomolekulare Chemie, Georg August Universität Göttingen Tammannstr 2 37077 Göttingen Germany
| | - Manuel Alcarazo
- Institut für Organische und Biomolekulare Chemie, Georg August Universität Göttingen Tammannstr 2 37077 Göttingen Germany
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47
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Li X, Xu Z. Skeletal Editing: Ring Insertion for Direct Access to Heterocycles. Molecules 2024; 29:1920. [PMID: 38731412 PMCID: PMC11085720 DOI: 10.3390/molecules29091920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 04/19/2024] [Accepted: 04/22/2024] [Indexed: 05/13/2024] Open
Abstract
Skeleton editing has rapidly advanced as a synthetic methodology in recent years, significantly streamlining the synthesis process and gaining widespread acceptance in drug synthesis and development. This field encompasses diverse ring reactions, many of which exhibit immense potential in skeleton editing, facilitating the generation of novel ring skeletons. Notably, reactions that involve the cleavage of two distinct rings followed by the reformation of new rings through ring insertion play a pivotal role in the construction of novel ring skeletons. This article aims to compile and systematize this category of reactions, emphasizing the two primary reaction types and offering a thorough exploration of their associated complexities and challenges. Our endeavor is to furnish readers with comprehensive reaction strategies, igniting research interest and injecting fresh impetus into the advancement of this domain.
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Affiliation(s)
| | - Zhigang Xu
- College of Pharmacy, National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics, IATTI, Chongqing University of Arts and Sciences, Chongqing 402160, China;
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48
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Niu C, Zhang Z, Li Q, Cheng Z, Jiao N, Zhang C. Selective Ring-Opening Amination of Isochromans and Tetrahydroisoquinolines. Angew Chem Int Ed Engl 2024; 63:e202401318. [PMID: 38459760 DOI: 10.1002/anie.202401318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 02/29/2024] [Accepted: 03/04/2024] [Indexed: 03/10/2024]
Abstract
The molecular structure-editing through selective C-C bond cleavage allows for the precise modification of molecular structures and opens up new possibilities in chemical synthesis. By strategically cleaving C-C bonds and editing the molecular structure, more efficient and versatile pathways for the synthesis of complex compounds could be designed, which brings significant implications for drug development and materials science. o-Aminophenethyl alcohols and amines are the essential key motifs in bioactive and functional material molecules. The traditional synthesis of these compounds usually requires multiple steps which could generate inseparable isomers and induce low efficiencies. By leveraging a molecular editing strategy, we herein reported a selective ring-opening amination of isochromans and tetrahydroisoquinolines for the efficient synthesis of o-aminophenethyl alcohols and amines. This innovative chemistry allows for the precise cleavage of C-C bonds under mild transition metal-free conditions. Notably, further synthetic application demonstrated that our method could provide an efficient approach to essential components of diverse bioactive molecules.
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Affiliation(s)
- Changhao Niu
- Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, 300072, Tianjin, China
| | - Zheng Zhang
- Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, 300072, Tianjin, China
| | - Qi Li
- Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, 300072, Tianjin, China
| | - Zengrui Cheng
- State Key Laboratory of Natural and Biomimetic Drugs, Chemical Biology Center, School of Pharmaceutical Sciences, Peking University, 38 Xueyuan Road, 100191, Beijing, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, Chemical Biology Center, School of Pharmaceutical Sciences, Peking University, 38 Xueyuan Road, 100191, Beijing, China
| | - Chun Zhang
- Institute of Molecular Plus, Tianjin Key Laboratory of Molecular Optoelectronic Science, School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, 300072, Tianjin, China
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49
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Nan J, Huang Q, Men X, Yang S, Wang J, Ma Y. Palladium-catalyzed denitrogenation/vinylation of benzotriazinones with vinylene carbonate. Chem Commun (Camb) 2024; 60:3571-3574. [PMID: 38469678 DOI: 10.1039/d4cc00059e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Herein, a novel Pd-catalyzed denitrogenation/vinylation of benzotriazinones using vinylene carbonate as the vinylation reagent is reported. This transformation demonstrates an unprecedented skeletal editing approach, effectively converting NN to CC fragments in situ and synthesizing a collection of isoquinolinones with broad-spectrum functional group tolerance. Moreover, the quite concise reaction system and late-stage modification of bioactive molecules comprehensively underscore the practical potential of this protocol.
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Affiliation(s)
- Jiang Nan
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
- Xi'an Key Laboratory of Antiviral and Antimicrobial-Resistant Bacteria Therapeutics Research, Xi'an, 710021, China
| | - Qiong Huang
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
| | - Xinran Men
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
| | - Shuai Yang
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
| | - Jing Wang
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
| | - Yangmin Ma
- Key Laboratory of Chemical Additives for China National Light Industry, College of Chemistry and Chemical Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.
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50
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Kim SF, Schwarz H, Jurczyk J, Nebgen BR, Hendricks H, Park H, Radosevich A, Zuerch MW, Harper K, Lux MC, Yeung CS, Sarpong R. Mechanistic Investigation, Wavelength-Dependent Reactivity, and Expanded Reactivity of N-Aryl Azacycle Photomediated Ring Contractions. J Am Chem Soc 2024; 146:5580-5596. [PMID: 38347659 PMCID: PMC11646679 DOI: 10.1021/jacs.3c13982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
Under mild blue-light irradiation, α-acylated saturated heterocycles undergo a photomediated one-atom ring contraction that extrudes a heteroatom from the cyclic core. However, for nitrogenous heterocycles, this powerful skeletal edit has been limited to substrates bearing electron-withdrawing substituents on nitrogen. Moreover, the mechanism and wavelength-dependent efficiency of this transformation have remained unclear. In this work, we increased the electron richness of nitrogen in saturated azacycles to improve light absorption and strengthen critical intramolecular hydrogen bonding while enabling the direct installation of the photoreactive handle. As a result, a broadly expanded substrate scope, including underexplored electron-rich substrates and previously unsuccessful heterocycles, has now been achieved. The significantly improved yields and diastereoselectivities have facilitated reaction rate, kinetic isotope effect (KIE), and quenching studies, in addition to the determination of quantum yields. Guided by these studies, we propose a revised ET/PT mechanism for the ring contraction, which is additionally corroborated by computational characterization of the lowest-energy excited states of α-acylated substrates through time-dependent DFT. The efficiency of the ring contraction at wavelengths longer than those strongly absorbed by the substrates was investigated through wavelength-dependent rate measurements, which revealed a red shift of the photochemical action plot relative to substrate absorbance. The elucidated mechanistic and photophysical details effectively rationalize empirical observations, including additive effects, that were previously poorly understood. Our findings not only demonstrate enhanced synthetic utility of the photomediated ring contraction and shed light on mechanistic details but may also offer valuable guidance for understanding wavelength-dependent reactivity for related photochemical systems.
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Affiliation(s)
- Sojung F Kim
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Henrik Schwarz
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Justin Jurczyk
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Bailey R Nebgen
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Lawrence Berkeley National Laboratory, Materials Sciences Division, Berkeley, California 94720, United States
| | - Hailey Hendricks
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Hojoon Park
- Department of Process Research and Development, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Andrew Radosevich
- Small Molecule Therapeutics & Platform Technologies, Abbvie Inc., North Chicago, Illinois 60064, United States
| | - Michael W Zuerch
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Lawrence Berkeley National Laboratory, Materials Sciences Division, Berkeley, California 94720, United States
| | - Kaid Harper
- Process Chemistry, Abbvie Inc., North Chicago, Illinois 60064, United States
| | - Michaelyn C Lux
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Charles S Yeung
- Department of Discovery Chemistry, Merck & Co., Inc., Boston, Massachusetts 02115, United States
| | - Richmond Sarpong
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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