Substituent Effects That Control Conjugated Oligomer Conformation through Non-covalent Interactions

Predisposition in Dynamic Covalent Chemistry: The Role of Non-Covalent Interactions in the Assembly of Tetrahedral Boronate Cages

Directional bonding strategies guide the design of complex molecular architectures, yet challenges arise due to emergent behavior. Rigid structures face geometric constraints and sensitivity to mismatches, hindering the efficient assembly of molecular organic cages (MOCs). Harnessing intramolecular non-covalent interactions offers a promising solution, broadening geometrical possibilities and enhancing adaptability to boost assembly yields. However, identifying these interactions remains challenging, with their full potential sometimes latent until final assembly. This study explores these challenges by synthesizing boronic acid tripods with varied oxygen positions at the tripodal feet and investigating their role in assembling tetrahedral boronate MOCs. Our results reveal substantial differences in the assembly efficiency among tripods. While the building blocks with oxygen in the benzylic position relative to the central aromatic ring form the MOCs in high yields, those with the oxygen atom directly bound to the central aromatic ring, only yield traces. Through X-ray crystallography and DFT analyses, we elucidate how intramolecular interactions profoundly influence the geometry of the building blocks and cages in a relay-like fashion, highlighting the importance of considering intramolecular interactions in the rational design of (supra)molecular architectures.

Conformational control enables boroxine-to-boronate cage metamorphosis

The discovery of molecular organic cages (MOCs) is inhibited by the limited organic-chemical space of the building blocks designed to fulfill strict geometric requirements for efficient assembly. Using intramolecular attractive or repulsive non-covalent interactions to control the conformation of flexible systems can effectively augment the variety of building blocks, ultimately facilitating the exploration of new MOCs. In this study, we introduce a set of boronic acid tripods that were designed using rational design principles. Conformational control was induced by extending the tripod's arms by a 2,3-dimethylbenzene unit, leading to the efficient formation of a tetrapodal nanometer-sized boroxine cage. The new building block's versatility was demonstrated by performing cage metamorphosis upon adding an aromatic tetraol. This led to a quantitative boroxine-to-boronate transformation and a topological shift from tetrahedral to trigonal bipyramidal.

The Key Role of Molecular Packing in Luminescence Property: From Adjacent Molecules to Molecular Aggregates

The luminescence materials act as the key components in many functional devices, as well as the detection and imaging systems, which can be permeated in each aspect of modern life, and attract more and more attention for the creative technology and applications. In addition to the diverse properties of organic luminogens, the multiple molecular packing at aggregated states frequently offers new and/or exciting performance. However, there still lacks comprehensive analysis of molecular packing in these organic materials, resulting in an increased gap between molecular design and practical applications. In this review, from the basic knowledge of organic compounds as single molecules, to the discernable property of excimer, charge transfer (CT) complex or self-assembly systems by adjacent molecules, and finally to the opto-electronic performance of molecular aggregates, the relevant factors to molecular packing and practical applications are discussed.

Tailored Tolane-Perfluorotolane Assembly as Supramolecular Base Pair Replacement in DNA

Arene-fluoroarene interactions offer outstanding possibilities for engineering of supramolecular systems, including nucleic acids. Here, we implement the tolane-perfluorotolane interaction as base pair replacement in DNA. Tolane (THH) and perfluorotolane (TFF) moieties were connected to acyclic backbone units, comprising glycol nucleic acid (GNA) or butyl nucleic acid (BuNA) building blocks, that were incorporated via phosphoramidite chemistry at opposite positions in a DNA duplex. Thermodynamic analyses by UV thermal melting revealed a compelling stabilization by THH/TFF heteropairs only when connected to the BuNA backbone, but not with the shorter GNA linker. Detailed NMR studies confirmed the preference of the BuNA backbone for enhanced polar π-stacking. This work defines how orthogonal supramolecular interactions can be tailored by small constitutional changes in the DNA backbone, and it inspires future studies of arene-fluoroarene-programmed assembly of DNA.

Self-assembled organic and hybrid materials derived from oligo-(p-phenyleneethynylenes)

Oligo-(p-Phenyleneethynylenes) (OPEs) have garnered widespread interest over the past three decades due to their excellent opto-electronic properties. However, the chief focus has been on the use of mainly small molecules or polymeric systems for the study of their structural diversity in opto-electronic applications. Recently, researchers have started delving deeper into their utility in material applications. Purely organic materials such as supramolecular polymers, self-assembled nanostructures, nanostructured organogels and single-crystalline materials derived from OPEs have already been developed and researched. Chirality has also been introduced into these systems. Additionally, these have shown physical properties such as polymorphism, liquid crystallinity, melt formation, mechanochromism, etc. All these materials have also shown excellent luminescence properties with high quantum yield and some have even shown energy harvesting properties. There have also been sporadic reports on OPE linker based hybrid systems such as metallogels and metal-organic framework (MOF) structures where structural analysis reveals the origin of tunable emission in these materials. Furthermore, by innovative structural design, unexplored properties of OPEs such as water repellency, bioimaging, drug delivery, photocatalysis, energy transfer, nanomorphology control, photoconductivity, and colour tunability could be achieved. This feature article will, therefore, encompass a detailed discussion on the development of this field as well as the analysis of the properties realized in OPE derived self-assembled supramolecular materials. The main focus will be on the following classes of materials: soft supramolecular materials, crystalline supramolecular π-systems, nanoscale metal-organic frameworks (NMOFs) and bulk metal-organic frameworks (MOFs) and how their application horizon has been expanded by integrating OPEs into their structures.

Stereo-electronic effect of perfluoropropyl group on solid state molecular packing of isomeric dibenzo [a,c]phenazine derivatives

We report here the synthesis, characterization, and crystal structures of three perfluoropropylated dibenzo [a,c]phenazine constitutional isomers where the only differences among them are the position of perfluoropropyl substituents. The crystal...

Improving the Overall Properties of Circularly Polarized Luminescent Materials Through Arene-Perfluoroarene Interactions

A major trade-off in the field of circularly polarized luminescence (CPL) of pure organic materials is that the large luminescence dissymmetry factor (g_lum ) usually gives rise to the suppression of luminescence efficiency (Φ_PL ). Here, a supramolecular self-assembled system, driven by arene-perfluoroarene (AP) interactions of chiral polycyclic aromatic hydrocarbons (PAHs) and octafluoronaphthalene (OFN), is reported to provide a solution to this problem. Two kinds of chiral PAHs based on pyrene and anthracene could co-assemble with OFN in hybrid solvents to form long-range-ordered AP assemblies. The detailed process of AP interaction driving self-assembly was verified by morphological measurements and fluorescence spectra. The AP assemblies exhibited chirality amplification not only in the excited state but also in the ground state. In addition, the AP assemblies showed an enhanced luminescence efficiency compared with the individual chiral PAHs due to the energy-barrier effect of OFN. The present strategy based on AP interactions could be applied to boost the development of highly efficient CPL-active materials.

Zirconocene-mediated selective synthesis of 1,4-bis(alkynyl)benzenes

A series of novel 1,4-bis(alkynyl)benzene derivatives were synthesized from trimethylsilyl-substituted alkynes by the mediation of zirconocene with excellent regioselectivity in high yields. The 3,6-bis(trimethylsilyl)-4,5-dialkylphthalic acid dimethyl esters were prepared by cycloaddition of 2,5-bis(trimethylsilyl)zirconacyclopentadienes to dimethyl acetylenedicarboxylate. After iodination with iodine monochloride, 3,6-diiodo-4,5-dialkylphthalic acid dimethyl esters reacted with terminal alkynes to prepare the corresponding 1,4-bis(alkynyl)benzene derivatives by Sonogashira coupling reactions. After removal of trimethylsilyl, 4,5-dibutyl-3,6-bis(ethynyl)phthalic acid dimethyl ester (compound 3) reacted with 4-iodobenzoic acid ethyl ester and 2-iodothiophene, respectively, to obtain the corresponding products 4a and 4c. Compound 3 can be extended to higher oligomers, which reacted with 1-bromo-4-iodobenzene and phenylacetylene in a stepwise manner under Sonogashira conditions to give the phenylene-ethynylene oligomer 5 in an isolated yield of 85%. The structures of the products were confirmed by 1H NMR spectroscopy, 13C NMR spectroscopy, and MS. The optical properties of the 1,4-bis(alkynyl)benzene derivatives were studied by UV-Vis spectroscopy and fluorescence spectra. The results indicated that some can be developed into potential photovoltaic materials.

Turning on solid-state phosphorescence of platinum acetylides with aromatic stacking

Neat solids that phosphoresce under ambient conditions are rare due to aggregation-caused quenching. This communication describes a platinum acetylide (PtPE) that phosphoresces as a solid due to programmed aromatic stacking interactions of pendant groups that prevent intermolecular aggregation.

Host-Enhanced Phenyl-Perfluorophenyl Polar-π Interactions

Phenyl-perfluorophenyl polar-π interactions have been revisited for the design and fabrication of functional supramolecular systems. The relatively weak associative interactions (ΔG ≈ -1.0 kcal/mol) have limited their use in aqueous self-assembly to date. Herein, we propose a strategy to strengthen phenyl-perfluorophenyl polar-π interactions by encapsulation within a synthetic host, thus increasing the binding affinity to ΔG= -15.5 kcal/mol upon formation of heteroternary complexes through social self-sorting. These heteroternary complexes were used as dynamic, yet strong, cross-linkers in the fabrication of supramolecular gels, which exhibited excellent viscoelasticity, stretchability, self-recovery, self-healing, and energy dissipation. This work unveils a general approach to exploit host-enhanced polar-π interactions in the design of robust aqueous supramolecular systems.

Triple-Pnictogen Bonding as a Tool for Supramolecular Assembly

Supramolecular assembly utilizing simultaneous formation of three pnictogen bonds around a single antimony vertex was explored via X-ray crystallography, solution NMR, and computational chemistry. An arylethynyl (AE) ligand was designed to complement the three electrophilic regions around the Sb compound. Though solution studies reveal large binding constants for individual pyridyl units with the Sb donor, the rigidity and prearrangement of the AE acceptor proved necessary to achieve simultaneous binding of three acceptors to the Sb-centered pnictogen-bond donor. Calculations and X-ray structures suggest that negative cooperativity upon sequential binding of three acceptors to a Sb center limits the utility of triple-pnictogen bonding pyridyl acceptors. These limitations can be negated, however, when positive cooperativity is designed into a complementary acceptor ligand.

Five-Membered Ruthenacycles: Ligand-Assisted Alkyne Insertion into 1,3-N,S-Chelated Ruthenium Borate Species

Building upon previous work, the chemistry of [(η⁶ -p-cymene)Ru{P(OMe)₂ OR}Cl₂ ], (R=H or Me) has been extended with [H₂ B(mbz)₂ ]^- (mbz=2-mercaptobenzothiazolyl) using different Ru precursors and borate ligands. As a result, a series of 1,3-N,S-chelated ruthenium borate complexes, for example, [(κ² -N,S-L)PR₃ Ru{κ³ -H,S,S'-H₂ B(L)₂ }], (2 a-d and 2 a'-d'; R=Ph, Cy, OMe or OPh and L=C₅ H₄ NS or C₇ H₄ NS₂ ) and [Ru{κ³ -H,S,S'-H₂ B(L)₂ }₂ ], (3: L=C₅ H₄ NS, 3': L=C₇ H₄ NS₂ ) were isolated upon treatment of [(η⁶ -p-cymene)RuCl₂ PR₃ ], 1 a-d (R=Ph, Cy, OMe or OPh) with [H₂ B(mp)₂ ]^- or [H₂ B(mbz)₂ ]^- ligands (mp=2-mercaptopyridyl). All the Ru borate complexes, 2 a-d and 2 a'-d' are stabilized by phosphine/phosphite and hemilabile N,S-chelating ligands. Treatment of these Ru borate species, 2 a'-c' with various terminal alkynes yielded two different types of five-membered ruthenacycle species, namely [PR₃ {C₇ H₄ S₂ -(E)-N-C=CH(R')}Ru{κ³ -H,S,S'-H₂ B(L)₂ }], (4-4'; R=Ph and R'=CO₂ Me or C₆ H₄ NO₂ ; L=C₇ H₄ NS₂ ) and [PR₃ {C₇ H₄ NS-(E)-S-C=CH(R')}Ru{κ³ -H,S,S'-H₂ B(L)₂ }], (5-5', 6 and 7; R=Ph, Cy or OMe and R'=CO₂ Me or C₆ H₄ NO₂ ; L=C₇ H₄ NS₂ ). All these five-membered ruthenacycle species contain an exocyclic C=C moiety, presumably formed by the insertion of a terminal alkyne into the Ru-N and Ru-S bonds. The new species have been characterized spectroscopically and the structures were further confirmed by single-crystal X-ray diffraction analysis. Theoretical studies and chemical-bonding analyses established that charge transfer occurs from phosphorus to ruthenium center following the trend PCy₃ <PPh₃ <P(OPh)₃ <P(OMe)₃ .

Directed Polymorphism and Mechanofluorochromism of Conjugated Materials through Weak Non-Covalent Control

Understanding and manipulating crystal polymorphism can provide novel strategies for materials discovery in organic optoelectronics. In this paper, a series of seven ester-terminated three-ring phenylene ethynylenes (PEs) exhibit structure-dependent polymorphism wherein alkyl chain length modulates the propensity to form violet or green fluorescent solid phases, as well as tunable thermal and mechanofluorochromic (MFC) transitions. These compounds harness "soft" non-covalent control to achieve polymorphism: the electronic substituent effect of the ester groups weakens the fluoroarene-arene (ArF-ArH) interactions that typically direct crystal packing of this class of compounds, increasing competitiveness of other interactions. Small structural modifications tip this balance and shift the prevalence of violet- or green-emitting polymorphs. Compounds with short alkyl chain lengths show both violet and various green fluorescent polymorphs, while the violet fluorescent form dominates with alkyl lengths longer than butyl. Further, thermally induced green-to-violet fluorescent crystal-to-crystal transitions occur for single crystals of CO2-1 and CO2-3. Finally, the PEs show reversible violet-to-green mechanofluorochromism (MFC), with temperature required for reversion of this MFC decreasing with alkyl chain length. We therefore present this design of directional but weak interactions as a strategy to access polymorphs and tunable stimuli-responsive behavior in solids.

Control of conformation in α-helix mimicking aromatic oligoamide foldamers through interactions between adjacent side-chains

The design, synthesis and structural characterization of non-natural oligomers that adopt well-defined conformations, so called foldamers, is a key objective in developing biomimetic 3D functional architectures. For the aromatic oligoamide foldamer family, use of interactions between side-chains to control conformation is underexplored. The current manuscript addresses this objective through the design, synthesis and conformational analyses of model dimers derived from 3-O-alkylated para-aminobenzoic acid monomers. The O-alkyl groups on these foldamers are capable of adopting syn- or anti-conformers through rotation around the Ar-CO/NH axes. In the syn-conformation this allows the foldamer to act as a topographical mimic of the α-helix whereby the O-alkyl groups mimic the spatial orientation of the i and i + 4 side-chains from the α-helix. Using molecular modelling and 2D NMR analyses, this work illustrates that covalent links and hydrogen-bonding interactions between side-chains can bias the conformation in favour of the α-helix mimicking syn-conformer, offering insight that may be more widely applied to control secondary structure in foldamers.

Small Changes With Big Consequences: Swapping Two Atoms In Side Chains Changes Phenylene-Ethynylene Packing And Fluorescence

Engineering the properties of conjugated materials in the solid state is an unsolved, ongoing challenge important to fundamental understanding of how non-covalent interactions dictate packing and key properties, as well as the development of technologies based in organic optoelectronics. The most common design paradigm of such materials divide them into a "main chain" with extended conjugation, the chemical structure of which determines optoelectronic properties, and "side chains" not conjugated to the backbone, which provide solubility when they are long alkyl chains. This paper describes comparisons between phenylene-ethynylene molecules in which slight changes to the structure of "side chains"-swapping hydrogen and fluorine atomic position on an aromatic ring-results in unexpectedly large changes in the solid-state optical properties. In a pair of anisyl-terminated three-ring phenylene-ethynylenes, switching the side chain arenes of benzyl esters from 2,4,6-trifluoro to 2,3,6-trifluoro results in a shift in fluorescence emission spectra of over 100 nm, as well as the opposite direction of force-induced shifting of emission. Through a combination X-ray crystal structures, electronic structure calculations, and comparisons with other derivatives, we describe how the 2,4,6-trifluorinated side chains yield cofacial fluoroarene-arene stacking interactions that twist the PE backbone out of conjugation, while the 2,3,6-trifluoro side chains do not stack, instead yielding more coplanar PE backbones that form intermolecular aggregates. Overall, this work demonstrates how slight modifications to parts of conjugated materials normally considered ancillary to optoelectronic properties can determine their solid-state properties, epitomizing the challenge of rational design but at the same time offering opportunities for materials discovery and improved understanding of non-covalent interactions.

Rise of Conjugated Poly-ynes and Poly(Metalla-ynes): From Design Through Synthesis to Structure-Property Relationships and Applications

Conjugated poly-ynes and poly(metalla-ynes) constitute an important class of new materials with potential application in various domains of science. The key factors responsible for the diverse usage of these materials is their intriguing and tunable chemical and photophysical properties. This review highlights fascinating advances made in the field of conjugated organic poly-ynes and poly(metalla-ynes) incorporating group 4-11 metals. This includes several important aspects of conjugated poly-ynes viz. synthetic protocols, bonding, electronic structure, nature of luminescence, structure-property relationships, diverse applications, and concluding remarks. Furthermore, we delineated the future directions and challenges in this particular area of research.

Reversible mechanofluorochromism of aniline-terminated phenylene ethynylenes

Seven three-ring phenylene-ethynylene (PE) structural analogs, differing only in the lengths of alkyl chains on terminal aniline substituents, show 50-62 nm bathochromic shifts in emission maxima in response to mechanical force (mechanofluorochromism, MC). These shifts are fully reversible with heat or solvent fuming. Shearing of these solids yields a transition from green-emitting crystalline phases to orange-emitting amorphous phases as established by differential scanning calorimetry and X-ray diffraction. Molecules with shorter alkyl chain lengths required higher temperatures to recover the hypsochromically shifted crystalline phases after grinding, while the recovery with chain lengths longer than butyl occurred at room temperature. In addition to this structure-dependent thermochromism, these compounds retain their MC properties in polymer hosts to various extents. The crystalline phases of these materials have PE chromophores that are twisted due to non-covalent perfluoroarene-arene (ArF-ArH) interactions involving perfluorophenyl pendants and the terminal rings of the PE chromophore, resulting in interrupted conjugation and an absence of chromophore aggregation. The MC behavior of an analog without the perfluoroarene rings is severely attenuated. This work demonstrates the general utility of twisted PEs as stimuli-responsive moieties and reveals clear structure-property relationships regarding the effects of alkyl chain length on these materials.

Ligation-Enhanced π-Hole···π Interactions Involving Isocyanides: Effect of π-Hole···π Noncovalent Bonding on Conformational Stabilization of Acyclic Diaminocarbene Ligands

The reaction of cis-[PdCl₂(CNXyl)₂] (Xyl = 2,6-Me₂C₆H₃) with the aminoazoles [1 H-imidazol-2-amine (1), 4 H-1,2,4-triazol-3-amine (2), 1 H-tetrazol-5-amine (3), 1 H-benzimidazol-2-amine (4), 1-alkyl-1 H-benzimidazol-2-amines, where alkyl = Me (5), Et (6)] in a 2:1 ratio in the presence of a base in CHCl₃ at RT proceeds regioselectively and leads to the binuclear diaminocarbene complexes [(ClPdCNXyl)₂{μ-C(N-azolyl)N(Xyl)C═NXyl}] (7-12; 73-91%). Compounds 7-12 were characterized by C, H, N elemental analyses, high-resolution ESI⁺-MS, Fourier transform infrared spectroscopy, 1D (¹H, ¹³C) and 2D (¹H,¹H-COSY, ¹H,¹H-NOESY, ¹H,¹³C-HSQC, ¹H,¹³C-HMBC) NMR spectroscopies, and X-ray diffraction (XRDn). Inspection of the XRDn data and results of the Hirshfeld surface analysis suggest the presence in all six structures of intramolecular π-hole_isocyanide···π_arene interactions between the electrophilic C atom of the isocyanide moiety and the neighboring arene ring. These interactions also result in distortion of the Pd-C≡N-Xyl fragment from the linearity. Results of density functional theory calculations [M06/MWB28 (Pd) and 6-31G* (other atoms) level of theory] for model structures of 7-9 followed by the topological analysis of the electron density distribution within the framework of Bader's theory (QTAIM method) reveal the presence of these weak interactions also in a CHCl₃ solution, and their calculated strength is 1.9-2.2 kcal/mol. The natural bond orbital analysis of 7-9 revealed that π(C-C)Xyl → π*(C-N)isocyanide charge transfer (CT) takes place along with the intramolecular π-hole_isocyanide···π_arene interactions. The observed π(C-C)_Xyl → π*(C-N)_isocyanide CT is due to ligation of the isocyanide to the metal center, whereas in the cases of the uncomplexed p-CNC₆H₄NC and CNXyl species, the effects of CT are negligible. Available CCDC data were processed from the perspective of isocyanide-involving π-hole···π interactions, disclosed the role of metal coordination in the π-hole donor ability of isocyanides, and verified the π-hole_isocyanide···π_arene interaction effect on the stabilization of the in-conformation in metal-bound acyclic diaminocarbenes.

An Additive-Free, Base-Catalyzed Protodesilylation of Organosilanes

We report an additive-free, base-catalyzed C-, N-, O-, and S-Si bond cleavage of various organosilanes in mild conditions. The novel catalyst system exhibits high efficiency and good functional group compatibility, providing the corresponding products in good to excellent yields with low catalyst loadings. Overall, this transition-metal-free process may offer a convenient and general alternative to current employing excess bases, strong acids, or metal-catalyzed systems for the protodesilylation of organosilanes.

The design of rigid cyclic tripyrrins: the importance of intermolecular interactions on aggregation and luminescence

Cyclic tripyrrin “locked” by a bridging benzyl moiety: enhancing the molecular rigidity and tuning aggregation and fluorescence via intermolecular halogen interactions.

Pure white light emission and charge transfer in organogels of symmetrical and unsymmetrical π-chromophoric oligo-p-(phenyleneethynylene) bola-amphiphiles

The gelation behavior of two novel π-chromophoric bola-amphiphiles has been studied and solution processable pure white light emitting and CT gels have been realized.

Investigation of rotameric conformations of substituted imidazo-[1,2-a]pyrazine: experimental and theoretical approaches

The different rotameric conformations of imidazo-[1,2-a]pyrazine have been synthesized and characterized by means of different experimental techniques, such as NMR, FTIR, and absorption spectroscopy and quantum chemical calculations. The different conformations were stabilized by hydrogen bonds, such as OH⋯N, ArH⋯N and ArH⋯ArH. The ground state optimizations and potential energy surface (PES) scanning profiles produced using density functional theory (DFT) show two stable rotameric forms for each molecule. The relative population of the conformations is affected by the strength of the hydrogen bonds. The calculated absorption spectra and isotopic shielding constants were acquired by time-dependent density functional theory (TD-DFT) and gauge invariant atomic orbitals (GIAO)-DFT, respectively. The strength of the hydrogen bonding interactions that resulted in the different conformations was studied by quantum theory of atoms in molecules (QTAIM).

The different rotameric conformations of imidazo-[1,2-a]pyrazine have been synthesized and characterized by means of different experimental techniques, such as NMR, FTIR, and absorption spectroscopy and quantum chemical calculations.