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For: Bittremieux W, Schmid R, Huber F, van der Hooft JJJ, Wang M, Dorrestein PC. Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectrum Alignment For Discovery of Structurally Related Molecules. J Am Soc Mass Spectrom 2022;33:1733-1744. [PMID: 35960544 DOI: 10.1021/jasms.2c00153] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Number Cited by Other Article(s)
1
Zweigle J, Tisler S, Bevilacqua M, Tomasi G, Nielsen NJ, Gawlitta N, Lübeck JS, Smilde AK, Christensen JH. Prioritization strategies for non-target screening in environmental samples by chromatography - High-resolution mass spectrometry: A tutorial. J Chromatogr A 2025;1751:465944. [PMID: 40203635 DOI: 10.1016/j.chroma.2025.465944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Revised: 04/01/2025] [Accepted: 04/03/2025] [Indexed: 04/11/2025]
2
Bushuiev R, Bushuiev A, Samusevich R, Brungs C, Sivic J, Pluskal T. Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS. Nat Biotechnol 2025:10.1038/s41587-025-02663-3. [PMID: 40410407 DOI: 10.1038/s41587-025-02663-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 03/31/2025] [Indexed: 05/25/2025]
3
Xu R, Zhu J. Unveiling the dark matter of the metabolome: A narrative review of bioinformatics tools for LC-HRMS-based compound annotation. Talanta 2025;295:128327. [PMID: 40393240 DOI: 10.1016/j.talanta.2025.128327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2025] [Revised: 05/07/2025] [Accepted: 05/13/2025] [Indexed: 05/22/2025]
4
Damiani T, Jarmusch AK, Aron AT, Petras D, Phelan VV, Zhao HN, Bittremieux W, Acharya DD, Ahmed MMA, Bauermeister A, Bertin MJ, Boudreau PD, Borges RM, Bowen BP, Brown CJ, Chagas FO, Clevenger KD, Correia MSP, Crandall WJ, Crüsemann M, Fahy E, Fiehn O, Garg N, Gerwick WH, Gilbert JR, Globisch D, Gomes PWP, Heuckeroth S, James CA, Jarmusch SA, Kakhkhorov SA, Kang KB, Kessler N, Kersten RD, Kim H, Kirk RD, Kohlbacher O, Kontou EE, Liu K, Lizama-Chamu I, Luu GT, Luzzatto Knaan T, Mannochio-Russo H, Marty MT, Matsuzawa Y, McAvoy AC, McCall LI, Mohamed OG, Nahor O, Neuweger H, Niedermeyer THJ, Nishida K, Northen TR, Overdahl KE, Rainer J, Reher R, Rodriguez E, Sachsenberg TT, Sanchez LM, Schmid R, Stevens C, Subramaniam S, Tian Z, Tripathi A, Tsugawa H, van der Hooft JJJ, Vicini A, Walter A, Weber T, Xiong Q, Xu T, Pluskal T, Dorrestein PC, Wang M. A universal language for finding mass spectrometry data patterns. Nat Methods 2025:10.1038/s41592-025-02660-z. [PMID: 40355727 DOI: 10.1038/s41592-025-02660-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 03/03/2025] [Indexed: 05/14/2025]
5
Bjärterot P, Nilsson A, Shariatgorji R, Vallianatou T, Kaya I, Svenningsson P, Käll L, Andrén PE. Met-ID: An Open-Source Software for Comprehensive Annotation of Multiple On-Tissue Chemical Modifications in MALDI-MSI. Anal Chem 2025;97:9033-9041. [PMID: 40253716 PMCID: PMC12044586 DOI: 10.1021/acs.analchem.5c00633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Revised: 03/20/2025] [Accepted: 03/25/2025] [Indexed: 04/22/2025]
6
Szwarc S, Rutz A, Lee K, Mejri Y, Bonnet O, Hazni H, Jagora A, Mbeng Obame RB, Noh JK, Otogo N'Nang E, Alaribe SC, Awang K, Bernadat G, Choi YH, Courdavault V, Frederich M, Gaslonde T, Huber F, Kam TS, Low YY, Poupon E, van der Hooft JJJ, Kang KB, Le Pogam P, Beniddir MA. Translating community-wide spectral library into actionable chemical knowledge: a proof of concept with monoterpene indole alkaloids. J Cheminform 2025;17:62. [PMID: 40296170 PMCID: PMC12039057 DOI: 10.1186/s13321-025-01009-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2025] [Accepted: 04/02/2025] [Indexed: 04/30/2025]  Open
7
Wu Q, Song D, Zhao Y, Verdegaal AA, Turocy T, Duncan-Lowey B, Goodman AL, Palm NW, Crawford JM. Activity of GPCR-targeted drugs influenced by human gut microbiota metabolism. Nat Chem 2025:10.1038/s41557-025-01789-w. [PMID: 40181149 DOI: 10.1038/s41557-025-01789-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 02/24/2025] [Indexed: 04/05/2025]
8
Nowatzky Y, Russo FF, Lisec J, Kister A, Reinert K, Muth T, Benner P. FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nat Commun 2025;16:2298. [PMID: 40055306 PMCID: PMC11889238 DOI: 10.1038/s41467-025-57422-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 02/20/2025] [Indexed: 05/13/2025]  Open
9
Onoprishvili T, Yuan JH, Petrov K, Ingalalli V, Khederlarian L, Leuchtenmuller N, Chandra S, Duarte A, Bender A, Gloaguen Y. SimMS: a GPU-accelerated cosine similarity implementation for tandem mass spectrometry. Bioinformatics 2025;41:btaf081. [PMID: 39977359 PMCID: PMC11886821 DOI: 10.1093/bioinformatics/btaf081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 01/17/2025] [Accepted: 02/18/2025] [Indexed: 02/22/2025]  Open
10
Charron-Lamoureux V, Mannochio-Russo H, Lamichhane S, Xing S, Patan A, Portal Gomes PW, Rajkumar P, Deleray V, Caraballo-Rodríguez AM, Chua KV, Lee LS, Liu Z, Ching J, Wang M, Dorrestein PC. A guide to reverse metabolomics-a framework for big data discovery strategy. Nat Protoc 2025:10.1038/s41596-024-01136-2. [PMID: 40021805 DOI: 10.1038/s41596-024-01136-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 12/17/2024] [Indexed: 03/03/2025]
11
Martin M, Bittremieux W, Hassoun S. Molecular Structure Discovery for Untargeted Metabolomics Using Biotransformation Rules and Global Molecular Networking. Anal Chem 2025;97:3213-3219. [PMID: 39903752 PMCID: PMC11841678 DOI: 10.1021/acs.analchem.4c01565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 12/18/2024] [Accepted: 12/22/2024] [Indexed: 02/06/2025]
12
Guan X, Bu F, Fu Y, Zhang H, Xiang H, Chen X, Chen T, Wu X, Wu K, Liu L, Dong X. Immunogenic peptides putatively from intratumor microbes: Opportunities for colorectal cancer treatment. iScience 2024;27:111338. [PMID: 39640572 PMCID: PMC11617993 DOI: 10.1016/j.isci.2024.111338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 07/23/2024] [Accepted: 11/04/2024] [Indexed: 12/07/2024]  Open
13
Cho YB, Kim JG, Han JS, An BK, Lee D, Lee MK, Hwang BY. LC-HRMS/MS-Guided Isolation of Unusual Diarylheptanoids from the Rhizomes of Alpinia officinarum. ACS OMEGA 2024;9:46484-46491. [PMID: 39583693 PMCID: PMC11579737 DOI: 10.1021/acsomega.4c07987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 10/24/2024] [Accepted: 10/29/2024] [Indexed: 11/26/2024]
14
Meunier M, Schinkovitz A, Derbré S. Current and emerging tools and strategies for the identification of bioactive natural products in complex mixtures. Nat Prod Rep 2024;41:1766-1786. [PMID: 39291767 DOI: 10.1039/d4np00006d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2024]
15
Shahneh MRZ, Strobel M, Vitale GA, Geibel C, Abiead YE, Garg N, Wagner B, Forchhammer K, Aron A, Phelan VV, Petras D, Wang M. ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024;35:2564-2578. [PMID: 38830143 PMCID: PMC11540723 DOI: 10.1021/jasms.4c00061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
16
Zhang H, Yang Q, Xie T, Wang Y, Zhang Z, Lu H. MSBERT: Embedding Tandem Mass Spectra into Chemically Rational Space by Mask Learning and Contrastive Learning. Anal Chem 2024;96:16599-16608. [PMID: 39397717 DOI: 10.1021/acs.analchem.4c02426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2024]
17
Elhamraoui Z, Borràs E, Wilhelm M, Sabidó E. Theoretical Assessment of Indistinguishable Peptides in Mass Spectrometry-Based Proteomics. Anal Chem 2024;96:15829-15833. [PMID: 39322219 PMCID: PMC11465223 DOI: 10.1021/acs.analchem.4c02803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 08/28/2024] [Accepted: 08/28/2024] [Indexed: 09/27/2024]
18
Wang X, Strobel M, Aron AT, Phelan VV, Acharya DD, Brown CJ, Clevenger K, Hu J, Kretsch A, Mahood EH, Menegatti C, Xiong Q, Wang M. Network Topology Evaluation and Transitive Alignments for Molecular Networking. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024;35:2165-2175. [PMID: 39133821 PMCID: PMC11516331 DOI: 10.1021/jasms.4c00208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
19
Coler EA, Melnik A, Lotfi A, Moradi D, Ahiadu B, Gomes PWP, Patan A, Dorrestein PC, Barnes S, Boginski V, Semenov A, Aksenov AA. Ordering molecular diversity in untargeted metabolomics via molecular community networking. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.02.606356. [PMID: 39131284 PMCID: PMC11312580 DOI: 10.1101/2024.08.02.606356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
20
Bui-Thi D, Liu Y, Lippens JL, Laukens K, De Vijlder T. TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry. J Cheminform 2024;16:61. [PMID: 38807166 PMCID: PMC11134763 DOI: 10.1186/s13321-024-00858-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 05/12/2024] [Indexed: 05/30/2024]  Open
21
Perez de Souza L, Fernie AR. Computational methods for processing and interpreting mass spectrometry-based metabolomics. Essays Biochem 2024;68:5-13. [PMID: 37999335 PMCID: PMC11065554 DOI: 10.1042/ebc20230019] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 11/10/2023] [Accepted: 11/15/2023] [Indexed: 11/25/2023]
22
Ellin NR, Guo Y, Miranda-Quintana RA, Prentice BM. Extended similarity methods for efficient data mining in imaging mass spectrometry. DIGITAL DISCOVERY 2024;3:805-817. [PMID: 38638647 PMCID: PMC11022984 DOI: 10.1039/d3dd00165b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 03/19/2024] [Indexed: 04/20/2024]
23
Mohanty I, Mannochio-Russo H, Schweer JV, El Abiead Y, Bittremieux W, Xing S, Schmid R, Zuffa S, Vasquez F, Muti VB, Zemlin J, Tovar-Herrera OE, Moraïs S, Desai D, Amin S, Koo I, Turck CW, Mizrahi I, Kris-Etherton PM, Petersen KS, Fleming JA, Huan T, Patterson AD, Siegel D, Hagey LR, Wang M, Aron AT, Dorrestein PC. The underappreciated diversity of bile acid modifications. Cell 2024;187:1801-1818.e20. [PMID: 38471500 DOI: 10.1016/j.cell.2024.02.019] [Citation(s) in RCA: 58] [Impact Index Per Article: 58.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 11/30/2023] [Accepted: 02/15/2024] [Indexed: 03/14/2024]
24
Engler Hart C, Kind T, Dorrestein PC, Healey D, Domingo-Fernández D. Weighting Low-Intensity MS/MS Ions and m/z Frequency for Spectral Library Annotation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024;35:266-274. [PMID: 38271611 PMCID: PMC10854760 DOI: 10.1021/jasms.3c00353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/29/2023] [Accepted: 01/05/2024] [Indexed: 01/27/2024]
25
Bittremieux W, Avalon NE, Thomas SP, Kakhkhorov SA, Aksenov AA, Gomes PWP, Aceves CM, Caraballo-Rodríguez AM, Gauglitz JM, Gerwick WH, Huan T, Jarmusch AK, Kaddurah-Daouk RF, Kang KB, Kim HW, Kondić T, Mannochio-Russo H, Meehan MJ, Melnik AV, Nothias LF, O'Donovan C, Panitchpakdi M, Petras D, Schmid R, Schymanski EL, van der Hooft JJJ, Weldon KC, Yang H, Xing S, Zemlin J, Wang M, Dorrestein PC. Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nat Commun 2023;14:8488. [PMID: 38123557 PMCID: PMC10733301 DOI: 10.1038/s41467-023-44035-y] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 11/28/2023] [Indexed: 12/23/2023]  Open
26
Jung YH, Kim JH. Feature-Based Molecular Networking Combined with Multivariate Analysis for the Characterization of Glutathione Adducts as a Smoking Gun of Bioactivation. Anal Chem 2023;95:17450-17457. [PMID: 37976220 DOI: 10.1021/acs.analchem.3c01094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
27
Ni X, Murray NB, Archer-Hartmann S, Pepi LE, Helm RF, Azadi P, Hong P. Toward Automatic Inference of Glycan Linkages Using MSn and Machine Learning─Proof of Concept Using Sialic Acid Linkages. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023;34:2127-2135. [PMID: 37621000 PMCID: PMC10557947 DOI: 10.1021/jasms.3c00132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 08/10/2023] [Accepted: 08/15/2023] [Indexed: 08/26/2023]
28
Miller A, York EM, Stopka SA, Martínez-François JR, Hossain MA, Baquer G, Regan MS, Agar NYR, Yellen G. Spatially resolved metabolomics and isotope tracing reveal dynamic metabolic responses of dentate granule neurons with acute stimulation. Nat Metab 2023;5:1820-1835. [PMID: 37798473 PMCID: PMC10626993 DOI: 10.1038/s42255-023-00890-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 08/09/2023] [Indexed: 10/07/2023]
29
Li Y, Fiehn O. Flash entropy search to query all mass spectral libraries in real time. Nat Methods 2023;20:1475-1478. [PMID: 37735567 PMCID: PMC11511675 DOI: 10.1038/s41592-023-02012-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 08/15/2023] [Indexed: 09/23/2023]
30
Carvalho ARV, Reis JDE, Gomes PWP, Ferraz AC, Mardegan HA, Menegatto MBDS, Souza Lima RL, de Sarges MRV, Pamplona SDGSR, Jeunon Gontijo KS, de Magalhães JC, da Silva MN, Magalhães CLDB, Silva CYYE. Untargeted-based metabolomics analysis and in vitro/in silico antiviral activity of extracts from Phyllanthus brasiliensis (Aubl.) Poir. PHYTOCHEMICAL ANALYSIS : PCA 2023;34:869-883. [PMID: 37403427 DOI: 10.1002/pca.3259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 06/05/2023] [Accepted: 06/14/2023] [Indexed: 07/06/2023]
31
Moorthy AS, Erisman EP, Kearsley AJ, Liang Y, Sisco E, Wallace WE. On the challenge of unambiguous identification of fentanyl analogs: Exploring measurement diversity using standard reference mass spectral libraries. J Forensic Sci 2023;68:1494-1503. [PMID: 37431311 PMCID: PMC10517722 DOI: 10.1111/1556-4029.15322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/13/2023] [Accepted: 06/22/2023] [Indexed: 07/12/2023]
32
Ellin NR, Miranda-Quintana RA, Prentice BM. Extended Similarity Methods for Efficient Data Mining in Imaging Mass Spectrometry. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.27.550838. [PMID: 37546817 PMCID: PMC10402165 DOI: 10.1101/2023.07.27.550838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
33
Miller A, York E, Stopka S, Martínez-François J, Hossain MA, Baquer G, Regan M, Agar N, Yellen G. Spatially resolved metabolomics and isotope tracing reveal dynamic metabolic responses of dentate granule neurons with acute stimulation. RESEARCH SQUARE 2023:rs.3.rs-2276903. [PMID: 37546759 PMCID: PMC10402263 DOI: 10.21203/rs.3.rs-2276903/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
34
Mehnert S, Davidson JT, Adeoye A, Lowe BD, Ruiz EA, King JR, Jackson GP. Expert Algorithm for Substance Identification Using Mass Spectrometry: Application to the Identification of Cocaine on Different Instruments Using Binary Classification Models. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023;34:1235-1247. [PMID: 37254938 PMCID: PMC10326919 DOI: 10.1021/jasms.3c00090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/09/2023] [Accepted: 05/15/2023] [Indexed: 06/01/2023]
35
Cai Y, Zhou Z, Zhu ZJ. Advanced analytical and informatic strategies for metabolite annotation in untargeted metabolomics. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Nogueira-Lima SHC, Gomes PWP, Navegantes-Lima KC, Reis JDE, Carvalho ARV, Pamplona SDGSR, Muribeca ADJB, da Silva MN, Monteiro MC, e Silva CYY. The Roots of Deguelia nitidula as a Natural Antibacterial Source against Staphylococcus aureus Strains. Metabolites 2022;12:1083. [PMID: 36355166 PMCID: PMC9696647 DOI: 10.3390/metabo12111083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/08/2022] [Accepted: 10/13/2022] [Indexed: 09/10/2024]  Open
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